Wall clock time and date at job start Wed Apr 1 2020 04:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47071 * 2 1 4 4 C 1.53002 * 109.46850 * 119.99744 * 2 1 3 5 5 N 1.46898 * 109.46985 * 175.00051 * 4 2 1 6 6 C 1.47503 * 111.00038 * 290.58642 * 5 4 2 7 7 C 1.51864 * 107.00801 * 154.50925 * 6 5 4 8 8 C 1.34699 * 127.45672 * 244.85628 * 7 6 5 9 9 C 1.40182 * 107.59422 * 180.02562 * 8 7 6 10 10 N 1.31187 * 108.23761 * 359.97438 * 9 8 7 11 11 N 1.34440 * 124.47581 * 64.84883 * 7 6 5 12 12 C 1.47694 * 124.31454 * 359.95758 * 11 7 6 13 13 C 1.53685 * 106.96364 * 295.53823 * 12 11 7 14 14 C 1.44792 * 110.99860 * 164.33538 * 5 4 2 15 15 H 1.09002 * 108.02693 * 77.10167 * 14 5 4 16 16 C 1.50698 * 108.02385 * 320.65420 * 14 5 4 17 17 O 1.21274 * 120.00228 * 317.84324 * 16 14 5 18 18 N 1.34781 * 119.99808 * 137.84518 * 16 14 5 19 19 C 1.47586 * 134.49097 * 179.97438 * 18 16 14 20 20 C 1.53944 * 86.11332 * 155.35921 * 19 18 16 21 21 C 1.50707 * 113.73839 * 137.95736 * 20 19 18 22 22 H 1.07997 * 119.99901 * 1.91949 * 21 20 19 23 23 C 1.37876 * 119.99757 * 181.92812 * 21 20 19 24 24 N 1.31511 * 120.00048 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99600 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47002 * 269.99321 * 25 23 21 27 27 H 1.48496 * 109.47352 * 29.99758 * 25 23 21 28 28 H 1.48505 * 109.46981 * 149.99707 * 25 23 21 29 29 C 1.47813 * 134.45988 * 359.86757 * 18 16 14 30 30 H 1.08988 * 109.47403 * 300.00209 * 1 2 3 31 31 H 1.09009 * 109.46499 * 60.00346 * 1 2 3 32 32 H 1.08998 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47042 * 239.99620 * 2 1 3 34 34 H 1.09002 * 109.46865 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47153 * 299.99791 * 3 2 1 36 36 H 1.09000 * 109.47498 * 59.99899 * 3 2 1 37 37 H 1.09012 * 109.46699 * 55.00085 * 4 2 1 38 38 H 1.08993 * 109.47212 * 295.00365 * 4 2 1 39 39 H 1.09000 * 109.94617 * 273.88206 * 6 5 4 40 40 H 1.09001 * 109.94262 * 35.13483 * 6 5 4 41 41 H 1.08004 * 126.20368 * 359.97438 * 8 7 6 42 42 H 1.08001 * 125.88050 * 179.97438 * 9 8 7 43 43 H 1.09001 * 109.95195 * 54.91124 * 12 11 7 44 44 H 1.09008 * 109.95183 * 176.09311 * 12 11 7 45 45 H 1.08996 * 109.19311 * 319.15969 * 13 12 11 46 46 H 1.08997 * 109.19486 * 199.88145 * 13 12 11 47 47 H 1.09003 * 113.76407 * 41.06050 * 19 18 16 48 48 H 1.08994 * 113.87109 * 269.67809 * 19 18 16 49 49 H 1.08998 * 113.74336 * 269.15084 * 20 19 18 50 50 H 0.96993 * 120.00399 * 0.02562 * 24 23 21 51 51 H 1.09002 * 113.77054 * 90.37549 * 29 18 16 52 52 H 1.09003 * 113.83248 * 318.91923 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5040 -0.8266 1.1905 6 6 3.9243 -1.7657 0.1335 7 6 5.3243 -1.3584 -0.2915 8 6 5.7119 -0.8906 -1.4936 9 6 7.0911 -0.6481 -1.4294 10 7 7.5075 -0.9623 -0.2257 11 7 6.4067 -1.4115 0.5041 12 6 6.3873 -1.8733 1.9068 13 6 5.5209 -0.8780 2.6946 14 6 4.0526 -1.1614 2.4880 15 1 3.8875 -2.2250 2.6598 16 6 3.2790 -0.3985 3.5323 17 8 2.9825 0.7616 3.3402 18 7 2.9167 -1.0055 4.6798 19 6 2.1784 -0.5821 5.8855 20 6 1.8411 -2.0721 6.0746 21 6 1.9440 -2.5410 7.5031 22 1 2.2027 -1.8411 8.2838 23 6 1.7081 -3.8636 7.8133 24 7 1.3928 -4.7158 6.8626 25 14 1.8364 -4.4448 9.5839 26 1 3.2271 -4.8861 9.8604 27 1 1.4798 -3.3302 10.4979 28 1 0.9044 -5.5804 9.8008 29 6 3.0980 -2.3636 5.2346 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1369 39 1 3.9354 -2.7836 0.5233 40 1 3.2438 -1.6989 -0.7153 41 1 5.0756 -0.7319 -2.3518 42 1 7.7051 -0.2682 -2.2326 43 1 5.9528 -2.8714 1.9638 44 1 7.4006 -1.8856 2.3085 45 1 5.7414 0.1345 2.3569 46 1 5.7558 -0.9602 3.7558 47 1 1.3101 0.0414 5.6725 48 1 2.8139 -0.1724 6.6706 49 1 0.9113 -2.3760 5.5936 50 1 1.3265 -4.4140 5.9431 51 1 4.0056 -2.4785 5.8273 52 1 2.9626 -3.1600 4.5028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278120111.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:46 Heat of formation + Delta-G solvation = 69.880028 kcal Electronic energy + Delta-G solvation = -32371.307334 eV Core-core repulsion = 28373.209441 eV Total energy + Delta-G solvation = -3998.097893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.58665 -41.56403 -39.76649 -38.16339 -36.74780 -34.86764 -34.59947 -32.88768 -31.19611 -30.51565 -28.04143 -27.95867 -27.60396 -27.06768 -26.43704 -24.93096 -23.29267 -22.16826 -21.79934 -21.17426 -20.32380 -19.82910 -19.13992 -18.55309 -17.90866 -17.26965 -16.94179 -16.35688 -16.25558 -16.17088 -15.63505 -15.54310 -15.32851 -15.22286 -15.01163 -14.57420 -14.43327 -14.34356 -13.88625 -13.78771 -13.53957 -13.41747 -13.34190 -13.28601 -13.18578 -13.02967 -12.85830 -12.74445 -12.65033 -12.48553 -12.34704 -11.92120 -11.85883 -11.77565 -11.60368 -11.49664 -11.39598 -11.03202 -10.57555 -10.46242 -10.20496 -9.68544 -9.55299 -9.40530 -8.61414 -6.35343 0.90821 1.45589 1.55745 1.60420 1.66064 1.69712 1.84258 1.94490 2.58776 2.61432 3.09036 3.17042 3.50016 3.53602 3.66591 3.74738 3.83454 3.97986 4.01826 4.03469 4.10609 4.19383 4.19958 4.23937 4.30393 4.32108 4.38682 4.48780 4.49913 4.59952 4.63728 4.68109 4.70682 4.75672 4.80513 4.82433 4.83030 4.84472 4.91390 5.03440 5.07347 5.21797 5.25800 5.37487 5.40319 5.52048 5.78587 5.81937 5.83283 5.98972 6.07611 6.19210 6.57738 6.72796 6.82740 7.03686 7.43488 8.79078 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012388 B = 0.003221 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.678182 B = 8690.353272 C = 9973.367784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.123 4.123 4 C 0.050 3.950 5 N -0.528 5.528 6 C 0.121 3.879 7 C 0.089 3.911 8 C -0.268 4.268 9 C 0.037 3.963 10 N -0.333 5.333 11 N -0.373 5.373 12 C 0.137 3.863 13 C -0.114 4.114 14 C 0.093 3.907 15 H 0.059 0.941 16 C 0.527 3.473 17 O -0.570 6.570 18 N -0.638 5.638 19 C 0.117 3.883 20 C 0.004 3.996 21 C -0.604 4.604 22 H 0.054 0.946 23 C -0.017 4.017 24 N -0.929 5.929 25 Si 1.112 2.888 26 H -0.273 1.273 27 H -0.275 1.275 28 H -0.288 1.288 29 C 0.113 3.887 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.026 0.974 37 H 0.036 0.964 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.167 0.833 42 H 0.208 0.792 43 H 0.107 0.893 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.100 0.900 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.031 0.969 50 H 0.261 0.739 51 H 0.086 0.914 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.796 3.744 -16.179 17.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 C -0.181 4.181 4 C -0.077 4.077 5 N -0.254 5.254 6 C -0.007 4.007 7 C -0.040 4.040 8 C -0.297 4.297 9 C -0.148 4.148 10 N -0.155 5.155 11 N -0.157 5.157 12 C 0.017 3.983 13 C -0.153 4.153 14 C -0.019 4.019 15 H 0.077 0.923 16 C 0.317 3.683 17 O -0.450 6.450 18 N -0.372 5.372 19 C -0.005 4.005 20 C -0.015 4.015 21 C -0.642 4.642 22 H 0.072 0.928 23 C -0.218 4.218 24 N -0.564 5.564 25 Si 0.935 3.065 26 H -0.198 1.198 27 H -0.200 1.200 28 H -0.214 1.214 29 C -0.010 4.010 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.146 0.854 41 H 0.184 0.816 42 H 0.224 0.776 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.084 0.916 46 H 0.118 0.882 47 H 0.079 0.921 48 H 0.100 0.900 49 H 0.049 0.951 50 H 0.071 0.929 51 H 0.104 0.896 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.758 3.455 -14.653 16.503 hybrid contribution -0.911 0.888 -0.950 1.588 sum 5.848 4.344 -15.603 17.220 Atomic orbital electron populations 1.21802 0.94390 1.02082 1.01953 1.21057 0.95558 0.96519 0.96651 1.21546 1.00891 0.95488 1.00158 1.22495 0.85112 0.99146 1.00972 1.60400 1.10502 1.50962 1.03503 1.21285 0.90336 0.93392 0.95711 1.21254 0.90211 1.00605 0.91915 1.21369 0.96020 1.13299 0.99059 1.24480 0.95666 0.99448 0.95213 1.77299 1.10312 1.21502 1.06353 1.48944 1.05161 1.50185 1.11365 1.22295 1.03122 0.97433 0.75469 1.21589 0.91219 1.00610 1.01902 1.20725 0.95207 0.97862 0.88110 0.92300 1.20613 0.78731 0.86711 0.82212 1.90654 1.56922 1.18286 1.79107 1.50569 1.54976 1.15790 1.15885 1.23207 0.94322 0.98531 0.84435 1.20554 0.93447 0.91613 0.95900 1.22117 1.52079 0.97151 0.92815 0.92790 1.27037 0.92340 0.93775 1.08610 1.70899 1.45661 1.37788 1.02091 0.82956 0.77477 0.75616 0.70455 1.19821 1.20007 1.21435 1.23648 1.01006 0.81871 0.94432 0.94325 0.90720 0.92129 0.89289 0.93333 0.91944 0.95488 0.94544 0.91605 0.91524 0.85426 0.81555 0.77577 0.87463 0.86294 0.91586 0.88218 0.92131 0.90021 0.95117 0.92868 0.89631 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.87 9.19 71.98 0.66 -2.21 16 2 C -0.08 -1.73 2.90 -10.79 -0.03 -1.76 16 3 C -0.12 -3.07 9.08 71.98 0.65 -2.42 16 4 C 0.05 1.33 3.81 86.30 0.33 1.66 16 5 N -0.53 -13.62 3.56 -885.23 -3.15 -16.77 16 6 C 0.12 2.42 5.44 85.81 0.47 2.88 16 7 C 0.09 2.01 6.25 41.72 0.26 2.27 16 8 C -0.27 -5.48 10.77 21.93 0.24 -5.24 16 9 C 0.04 0.78 12.04 85.26 1.03 1.81 16 10 N -0.33 -8.83 12.64 -56.63 -0.72 -9.54 16 11 N -0.37 -9.20 3.67 -330.50 -1.21 -10.41 16 12 C 0.14 2.85 6.81 86.38 0.59 3.44 16 13 C -0.11 -2.86 5.10 30.16 0.15 -2.70 16 14 C 0.09 2.58 1.86 43.90 0.08 2.67 16 15 H 0.06 1.55 6.67 -2.39 -0.02 1.53 16 16 C 0.53 18.79 5.14 87.66 0.45 19.24 16 17 O -0.57 -23.96 15.80 -3.01 -0.05 -24.01 16 18 N -0.64 -23.59 3.61 -836.16 -3.02 -26.61 16 19 C 0.12 4.66 8.39 86.48 0.73 5.39 16 20 C 0.00 0.18 3.07 -10.87 -0.03 0.15 16 21 C -0.60 -29.78 8.77 25.60 0.22 -29.56 16 22 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 23 C -0.02 -0.88 5.46 84.65 0.46 -0.42 16 24 N -0.93 -50.26 13.65 21.45 0.29 -49.96 16 25 Si 1.11 45.34 29.90 68.60 2.05 47.39 16 26 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 27 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 28 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 29 C 0.11 4.24 7.72 86.44 0.67 4.91 16 30 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.09 1.55 6.30 -2.39 -0.02 1.54 16 34 H 0.05 1.37 7.75 -2.39 -0.02 1.35 16 35 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 0.94 8.09 -2.38 -0.02 0.92 16 38 H 0.07 2.30 4.78 -2.39 -0.01 2.29 16 39 H 0.07 1.22 7.77 -2.39 -0.02 1.21 16 40 H 0.13 2.01 6.05 -2.39 -0.01 2.00 16 41 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 42 H 0.21 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.11 1.85 7.88 -2.39 -0.02 1.83 16 44 H 0.12 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.07 2.00 8.09 -2.39 -0.02 1.98 16 46 H 0.10 2.37 7.99 -2.39 -0.02 2.35 16 47 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.08 3.16 8.09 -2.39 -0.02 3.14 16 49 H 0.03 1.49 7.70 -2.39 -0.02 1.47 16 50 H 0.26 14.04 7.01 -92.71 -0.65 13.39 16 51 H 0.09 3.17 8.09 -2.39 -0.02 3.15 16 52 H 0.07 2.41 7.80 -2.39 -0.02 2.40 16 Total: -1.00 -64.57 406.93 2.14 -62.42 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.02 Total: 27.38 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 6.92 Total: 0.12 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -7.81 Total: -113.31 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.05 Total: 47.39 kcal Total: -64.57 2.14 -62.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278120111.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.304 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds