Wall clock time and date at job start Wed Apr 1 2020 04:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47020 * 120.00204 * 2 1 3 5 5 N 1.46909 * 109.47017 * 181.46075 * 4 2 1 6 6 C 1.44785 * 110.99799 * 182.75175 * 5 4 2 7 7 C 1.50966 * 116.59798 * 198.85925 * 6 5 4 8 8 C 1.53680 * 110.89385 * 287.83341 * 7 6 5 9 9 H 1.09006 * 109.94824 * 198.96627 * 8 7 6 10 10 C 1.50701 * 109.95217 * 320.14621 * 8 7 6 11 11 O 1.21283 * 119.99880 * 131.13541 * 10 8 7 12 12 N 1.34772 * 119.99867 * 311.12736 * 10 8 7 13 13 C 1.47579 * 134.48957 * 179.97438 * 12 10 8 14 14 C 1.53948 * 86.11811 * 155.36574 * 13 12 10 15 15 C 1.50695 * 113.74207 * 137.95351 * 14 13 12 16 16 H 1.07997 * 120.00440 * 0.27477 * 15 14 13 17 17 C 1.37875 * 119.99963 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00171 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47030 * 120.00015 * 19 17 15 22 22 H 1.48503 * 109.47043 * 239.99808 * 19 17 15 23 23 C 1.47582 * 134.49683 * 0.02562 * 12 10 8 24 24 N 1.47693 * 106.97590 * 79.51341 * 8 7 6 25 25 N 1.39506 * 127.44599 * 115.54718 * 24 8 7 26 26 C 1.31185 * 107.85685 * 180.02562 * 25 24 8 27 27 C 1.40183 * 108.23682 * 0.02562 * 26 25 24 28 28 C 1.34441 * 124.31161 * 295.55062 * 24 8 7 29 29 C 1.47494 * 110.99692 * 309.00208 * 5 4 2 30 30 H 1.09003 * 109.46763 * 299.99756 * 1 2 3 31 31 H 1.09001 * 109.47358 * 59.99581 * 1 2 3 32 32 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46763 * 240.00244 * 2 1 3 34 34 H 1.08997 * 109.47482 * 60.00401 * 3 2 1 35 35 H 1.09002 * 109.46935 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46976 * 300.00066 * 3 2 1 37 37 H 1.09000 * 109.47362 * 61.46642 * 4 2 1 38 38 H 1.09000 * 109.47222 * 301.46033 * 4 2 1 39 39 H 1.08999 * 108.02958 * 77.06711 * 6 5 4 40 40 H 1.09004 * 108.03076 * 320.65327 * 6 5 4 41 41 H 1.08992 * 109.19345 * 167.46517 * 7 6 5 42 42 H 1.08998 * 109.15111 * 48.17132 * 7 6 5 43 43 H 1.09006 * 113.77052 * 41.06111 * 13 12 10 44 44 H 1.09005 * 113.87281 * 269.67946 * 13 12 10 45 45 H 1.08998 * 113.73784 * 269.15515 * 14 13 12 46 46 H 0.96996 * 120.00212 * 179.97438 * 18 17 15 47 47 H 1.08995 * 113.76844 * 90.33509 * 23 12 10 48 48 H 1.08996 * 113.76239 * 318.93669 * 23 12 10 49 49 H 1.08003 * 125.87996 * 179.97438 * 26 25 24 50 50 H 1.08004 * 126.20183 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.94568 * 273.87822 * 29 5 4 52 52 H 1.08995 * 109.94620 * 35.12721 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5086 -0.6908 1.2670 6 6 4.0290 -1.4209 2.4038 7 6 5.4531 -1.1213 2.8052 8 6 6.4443 -1.7069 1.7872 9 1 7.4348 -1.7857 2.2355 10 6 5.9750 -3.0659 1.3357 11 8 5.9316 -3.3305 0.1529 12 7 5.6035 -3.9874 2.2464 13 6 5.1069 -5.3751 2.1703 14 6 5.6659 -5.5424 3.5949 15 6 4.7551 -6.3103 4.5177 16 1 3.8111 -6.6879 4.1537 17 6 5.1293 -6.5352 5.8255 18 7 6.2813 -6.0801 6.2675 19 14 4.0006 -7.4878 6.9694 20 1 2.7741 -7.8880 6.2341 21 1 4.7024 -8.7010 7.4599 22 1 3.6279 -6.6309 8.1235 23 6 5.5291 -4.0138 3.7201 24 7 6.4813 -0.7792 0.6386 25 7 7.5654 -0.0216 0.1947 26 6 7.1741 0.6659 -0.8518 27 6 5.8282 0.3613 -1.0986 28 6 5.4346 -0.5286 -0.1671 29 6 4.0626 -1.1620 -0.0162 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6983 -1.7563 1.2361 38 1 1.6554 -0.2228 2.1390 39 1 3.9581 -2.4858 2.1820 40 1 3.3867 -1.2146 3.2600 41 1 5.6480 -1.5556 3.7857 42 1 5.5900 -0.0412 2.8582 43 1 5.6171 -5.9840 1.4238 44 1 4.0212 -5.4525 2.1124 45 1 6.6963 -5.8967 3.6231 46 1 6.5444 -6.2380 7.1877 47 1 4.5671 -3.6900 4.1172 48 1 6.3764 -3.5354 4.2113 49 1 7.7837 1.3494 -1.4242 50 1 5.2176 0.7663 -1.8921 51 1 4.1536 -2.2481 -0.0055 52 1 3.4168 -0.8501 -0.8369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278121078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:54 Heat of formation + Delta-G solvation = 95.747352 kcal Electronic energy + Delta-G solvation = -32745.524467 eV Core-core repulsion = 28748.548265 eV Total energy + Delta-G solvation = -3996.976201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63284 -39.74942 -38.46268 -37.23847 -35.54385 -33.56646 -32.78957 -31.47671 -29.99310 -29.15488 -27.28722 -26.77803 -26.53100 -25.36924 -25.15069 -24.03180 -21.63845 -21.08388 -20.54601 -20.08639 -19.20816 -18.24651 -17.02360 -16.92383 -16.36988 -16.23741 -15.68833 -15.37694 -15.08027 -14.92656 -14.64018 -14.24561 -14.18543 -14.00296 -13.57920 -13.30061 -13.08506 -12.98352 -12.67645 -12.53099 -12.35388 -12.30099 -12.04132 -11.90015 -11.86253 -11.72797 -11.63842 -11.40586 -11.13219 -11.07445 -11.00162 -10.86682 -10.81412 -10.64550 -10.52381 -10.30446 -9.83814 -9.47710 -9.21924 -8.98673 -8.71323 -8.39365 -8.24171 -8.07661 -6.29578 -4.35946 2.07554 2.42051 2.86627 3.02558 3.15002 3.24879 3.27186 3.38232 3.78110 4.23712 4.43574 4.54324 4.58624 4.70703 4.80941 4.84895 4.96771 5.01028 5.05003 5.14561 5.21492 5.37409 5.41927 5.47331 5.52703 5.55844 5.63152 5.70915 5.76932 5.78148 5.82988 5.85065 5.88382 5.92701 5.96852 5.98128 6.03784 6.07226 6.17260 6.22586 6.31859 6.34023 6.36915 6.42191 6.60721 6.85819 6.90411 7.02458 7.16994 7.41402 7.67520 7.97319 8.01872 8.20049 8.42055 8.68204 9.31991 10.79873 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003529 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.225829 B = 7932.966991 C = 9451.129966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.139 4.139 4 C 0.067 3.933 5 N -0.540 5.540 6 C 0.045 3.955 7 C -0.123 4.123 8 C 0.147 3.853 9 H 0.128 0.872 10 C 0.520 3.480 11 O -0.547 6.547 12 N -0.631 5.631 13 C 0.105 3.895 14 C 0.036 3.964 15 C -0.521 4.521 16 H 0.064 0.936 17 C 0.070 3.930 18 N -0.884 5.884 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.100 3.900 24 N -0.344 5.344 25 N -0.299 5.299 26 C 0.041 3.959 27 C -0.278 4.278 28 C 0.131 3.869 29 C 0.096 3.904 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.035 0.965 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.265 0.735 47 H 0.079 0.921 48 H 0.067 0.933 49 H 0.179 0.821 50 H 0.142 0.858 51 H 0.074 0.926 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.313 13.356 -8.740 17.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.119 4.119 3 C -0.196 4.196 4 C -0.060 4.060 5 N -0.265 5.265 6 C -0.083 4.083 7 C -0.162 4.162 8 C 0.041 3.959 9 H 0.146 0.854 10 C 0.307 3.693 11 O -0.427 6.427 12 N -0.365 5.365 13 C -0.016 4.016 14 C 0.016 3.984 15 C -0.559 4.559 16 H 0.082 0.918 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.022 4.022 24 N -0.126 5.126 25 N -0.120 5.120 26 C -0.144 4.144 27 C -0.308 4.308 28 C 0.002 3.998 29 C -0.032 4.032 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.085 0.915 49 H 0.196 0.804 50 H 0.160 0.840 51 H 0.092 0.908 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.018 13.469 -8.345 16.949 hybrid contribution -1.254 -1.031 0.127 1.628 sum -7.272 12.438 -8.219 16.587 Atomic orbital electron populations 1.21806 0.94937 1.01720 1.01904 1.21292 0.95471 0.97498 0.97654 1.21737 1.02577 0.94562 1.00752 1.22150 0.86026 0.98884 0.98986 1.60680 1.06712 1.57257 1.01817 1.21375 0.95858 0.97140 0.93956 1.21801 0.93167 1.03049 0.98138 1.21576 1.03212 0.86589 0.84495 0.85396 1.19942 0.78696 0.84864 0.85792 1.90694 1.55953 1.79566 1.16438 1.50468 1.62238 1.14635 1.09198 1.23557 0.98798 0.78694 1.00579 1.20508 0.98400 0.90523 0.88931 1.20969 1.04310 1.35585 0.95037 0.91813 1.25013 0.95010 0.95087 0.98312 1.69943 1.20508 1.44983 1.16664 0.86497 0.80846 0.79808 0.80665 1.19581 1.20821 1.20841 1.23901 1.00520 1.01892 0.75860 1.48274 1.07563 1.33074 1.23700 1.77327 1.09076 1.10253 1.15347 1.23859 0.95301 0.99654 0.95623 1.20903 0.96882 1.07547 1.05476 1.20804 0.90475 0.96610 0.91954 1.21542 0.89934 0.98856 0.92862 0.92574 0.92486 0.92771 0.90935 0.93050 0.91101 0.93535 0.94690 0.90368 0.93504 0.90231 0.87850 0.89387 0.91887 0.90650 0.91545 0.92567 0.90259 0.91501 0.80417 0.84028 0.90825 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.10 -0.92 2.44 -90.62 -0.22 -1.14 16 3 C -0.14 -1.29 8.98 37.16 0.33 -0.95 16 4 C 0.07 0.71 4.44 -3.82 -0.02 0.69 16 5 N -0.54 -6.83 3.70 -237.89 -0.88 -7.71 16 6 C 0.04 0.60 4.45 -5.98 -0.03 0.58 16 7 C -0.12 -1.66 4.85 -27.40 -0.13 -1.80 16 8 C 0.15 2.38 3.67 -68.07 -0.25 2.13 16 9 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 10 C 0.52 9.61 4.89 -10.99 -0.05 9.55 16 11 O -0.55 -11.74 14.74 5.55 0.08 -11.65 16 12 N -0.63 -11.50 2.55 -178.39 -0.45 -11.96 16 13 C 0.11 2.01 8.39 -2.97 -0.02 1.98 16 14 C 0.04 0.77 3.62 -90.83 -0.33 0.44 16 15 C -0.52 -12.37 8.77 -34.44 -0.30 -12.68 16 16 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 17 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.88 -22.77 13.27 55.43 0.74 -22.03 16 19 Si 0.89 19.14 29.54 -169.99 -5.02 14.12 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 C 0.10 1.85 5.70 -2.96 -0.02 1.83 16 24 N -0.34 -5.82 3.24 -50.55 -0.16 -5.98 16 25 N -0.30 -5.11 12.64 30.75 0.39 -4.73 16 26 C 0.04 0.59 12.04 -17.10 -0.21 0.38 16 27 C -0.28 -3.94 10.77 -40.11 -0.43 -4.38 16 28 C 0.13 2.05 5.46 -82.12 -0.45 1.60 16 29 C 0.10 1.36 4.73 -4.07 -0.02 1.34 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.69 5.91 -51.93 -0.31 0.39 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.78 7.20 -51.93 -0.37 0.41 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.78 8.07 -51.93 -0.42 0.37 16 39 H 0.05 0.72 4.82 -51.93 -0.25 0.47 16 40 H 0.08 0.96 7.78 -51.93 -0.40 0.56 16 41 H 0.10 1.30 6.43 -51.93 -0.33 0.96 16 42 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 45 H 0.07 1.59 8.13 -51.93 -0.42 1.17 16 46 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 47 H 0.08 1.42 8.00 -51.93 -0.42 1.01 16 48 H 0.07 1.22 7.74 -51.93 -0.40 0.82 16 49 H 0.18 1.85 8.06 -52.48 -0.42 1.43 16 50 H 0.14 1.63 8.06 -52.48 -0.42 1.20 16 51 H 0.07 1.25 4.99 -51.93 -0.26 1.00 16 52 H 0.10 1.27 5.08 -51.93 -0.26 1.00 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -28.47 396.56 -9.70 -38.17 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.46 Total: 5.40 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.90 Total: 0.40 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.37 Total: -52.42 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.65 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.47 -9.70 -38.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278121078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.918 kcal (2) G-P(sol) polarization free energy of solvation -28.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds