Wall clock time and date at job start Wed Apr 1 2020 04:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47020 * 120.00204 * 2 1 3 5 5 N 1.46909 * 109.47017 * 181.46075 * 4 2 1 6 6 C 1.44785 * 110.99799 * 182.75175 * 5 4 2 7 7 C 1.50966 * 116.59798 * 198.85925 * 6 5 4 8 8 C 1.53680 * 110.89385 * 287.83341 * 7 6 5 9 9 H 1.09006 * 109.94824 * 198.96627 * 8 7 6 10 10 C 1.50701 * 109.95217 * 320.14621 * 8 7 6 11 11 O 1.21283 * 119.99880 * 131.13541 * 10 8 7 12 12 N 1.34772 * 119.99867 * 311.12736 * 10 8 7 13 13 C 1.47579 * 134.48957 * 179.97438 * 12 10 8 14 14 C 1.53948 * 86.11811 * 155.36574 * 13 12 10 15 15 C 1.50695 * 113.74207 * 137.95351 * 14 13 12 16 16 H 1.07997 * 120.00440 * 0.27477 * 15 14 13 17 17 C 1.37875 * 119.99963 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00171 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47030 * 120.00015 * 19 17 15 22 22 H 1.48503 * 109.47043 * 239.99808 * 19 17 15 23 23 C 1.47582 * 134.49683 * 0.02562 * 12 10 8 24 24 N 1.47693 * 106.97590 * 79.51341 * 8 7 6 25 25 N 1.39506 * 127.44599 * 115.54718 * 24 8 7 26 26 C 1.31185 * 107.85685 * 180.02562 * 25 24 8 27 27 C 1.40183 * 108.23682 * 0.02562 * 26 25 24 28 28 C 1.34441 * 124.31161 * 295.55062 * 24 8 7 29 29 C 1.47494 * 110.99692 * 309.00208 * 5 4 2 30 30 H 1.09003 * 109.46763 * 299.99756 * 1 2 3 31 31 H 1.09001 * 109.47358 * 59.99581 * 1 2 3 32 32 H 1.09002 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46763 * 240.00244 * 2 1 3 34 34 H 1.08997 * 109.47482 * 60.00401 * 3 2 1 35 35 H 1.09002 * 109.46935 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.46976 * 300.00066 * 3 2 1 37 37 H 1.09000 * 109.47362 * 61.46642 * 4 2 1 38 38 H 1.09000 * 109.47222 * 301.46033 * 4 2 1 39 39 H 1.08999 * 108.02958 * 77.06711 * 6 5 4 40 40 H 1.09004 * 108.03076 * 320.65327 * 6 5 4 41 41 H 1.08992 * 109.19345 * 167.46517 * 7 6 5 42 42 H 1.08998 * 109.15111 * 48.17132 * 7 6 5 43 43 H 1.09006 * 113.77052 * 41.06111 * 13 12 10 44 44 H 1.09005 * 113.87281 * 269.67946 * 13 12 10 45 45 H 1.08998 * 113.73784 * 269.15515 * 14 13 12 46 46 H 0.96996 * 120.00212 * 179.97438 * 18 17 15 47 47 H 1.08995 * 113.76844 * 90.33509 * 23 12 10 48 48 H 1.08996 * 113.76239 * 318.93669 * 23 12 10 49 49 H 1.08003 * 125.87996 * 179.97438 * 26 25 24 50 50 H 1.08004 * 126.20183 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.94568 * 273.87822 * 29 5 4 52 52 H 1.08995 * 109.94620 * 35.12721 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5086 -0.6908 1.2670 6 6 4.0290 -1.4209 2.4038 7 6 5.4531 -1.1213 2.8052 8 6 6.4443 -1.7069 1.7872 9 1 7.4348 -1.7857 2.2355 10 6 5.9750 -3.0659 1.3357 11 8 5.9316 -3.3305 0.1529 12 7 5.6035 -3.9874 2.2464 13 6 5.1069 -5.3751 2.1703 14 6 5.6659 -5.5424 3.5949 15 6 4.7551 -6.3103 4.5177 16 1 3.8111 -6.6879 4.1537 17 6 5.1293 -6.5352 5.8255 18 7 6.2813 -6.0801 6.2675 19 14 4.0006 -7.4878 6.9694 20 1 2.7741 -7.8880 6.2341 21 1 4.7024 -8.7010 7.4599 22 1 3.6279 -6.6309 8.1235 23 6 5.5291 -4.0138 3.7201 24 7 6.4813 -0.7792 0.6386 25 7 7.5654 -0.0216 0.1947 26 6 7.1741 0.6659 -0.8518 27 6 5.8282 0.3613 -1.0986 28 6 5.4346 -0.5286 -0.1671 29 6 4.0626 -1.1620 -0.0162 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9562 -0.8900 37 1 1.6983 -1.7563 1.2361 38 1 1.6554 -0.2228 2.1390 39 1 3.9581 -2.4858 2.1820 40 1 3.3867 -1.2146 3.2600 41 1 5.6480 -1.5556 3.7857 42 1 5.5900 -0.0412 2.8582 43 1 5.6171 -5.9840 1.4238 44 1 4.0212 -5.4525 2.1124 45 1 6.6963 -5.8967 3.6231 46 1 6.5444 -6.2380 7.1877 47 1 4.5671 -3.6900 4.1172 48 1 6.3764 -3.5354 4.2113 49 1 7.7837 1.3494 -1.4242 50 1 5.2176 0.7663 -1.8921 51 1 4.1536 -2.2481 -0.0055 52 1 3.4168 -0.8501 -0.8369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278121078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:53 Heat of formation + Delta-G solvation = 80.346412 kcal Electronic energy + Delta-G solvation = -32746.192301 eV Core-core repulsion = 28748.548265 eV Total energy + Delta-G solvation = -3997.644036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.83601 -41.17106 -39.49256 -38.77359 -36.60266 -34.71612 -34.49227 -32.62918 -31.28388 -30.55691 -28.16603 -27.89099 -27.53679 -26.95454 -26.72527 -25.09484 -22.93907 -22.29204 -21.73556 -21.18705 -20.39575 -19.60511 -18.72194 -18.21629 -17.81796 -17.41390 -16.83121 -16.56302 -16.44366 -16.23705 -15.98985 -15.52171 -15.36732 -15.10205 -14.72905 -14.35611 -14.27316 -14.22913 -13.98432 -13.78889 -13.42518 -13.39378 -13.24362 -13.17244 -12.99519 -12.93282 -12.84209 -12.72807 -12.58541 -12.54069 -12.24768 -12.10810 -11.79008 -11.68448 -11.62972 -11.45874 -11.22922 -11.17228 -10.86343 -10.55923 -10.22442 -9.66018 -9.49577 -9.31953 -8.16819 -6.27506 0.87436 1.16939 1.44670 1.45867 1.51345 1.59686 1.93624 1.96681 2.45675 2.75651 3.11277 3.15322 3.37809 3.57917 3.63686 3.74990 3.97120 4.03529 4.12660 4.18389 4.21089 4.24671 4.32481 4.36520 4.44262 4.47162 4.52195 4.61370 4.67821 4.70632 4.73983 4.76576 4.78663 4.83049 4.84618 4.87030 4.90996 4.97934 5.02184 5.10662 5.16997 5.26559 5.30911 5.46561 5.59086 5.59581 5.78833 5.81099 5.88364 6.01896 6.04202 6.20691 6.68321 6.80911 6.82080 6.91625 7.42873 8.92778 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011911 B = 0.003529 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.225829 B = 7932.966991 C = 9451.129966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.066 3.934 5 N -0.536 5.536 6 C 0.046 3.954 7 C -0.112 4.112 8 C 0.147 3.853 9 H 0.128 0.872 10 C 0.524 3.476 11 O -0.579 6.579 12 N -0.627 5.627 13 C 0.112 3.888 14 C 0.023 3.977 15 C -0.527 4.527 16 H 0.065 0.935 17 C 0.026 3.974 18 N -0.915 5.915 19 Si 0.953 3.047 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.119 3.881 24 N -0.359 5.359 25 N -0.337 5.337 26 C 0.045 3.955 27 C -0.278 4.278 28 C 0.112 3.888 29 C 0.105 3.895 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.088 0.912 39 H 0.026 0.974 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.091 0.909 48 H 0.070 0.930 49 H 0.215 0.785 50 H 0.169 0.831 51 H 0.043 0.957 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.022 14.956 -9.034 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 C -0.190 4.190 4 C -0.061 4.061 5 N -0.260 5.260 6 C -0.083 4.083 7 C -0.151 4.151 8 C 0.041 3.959 9 H 0.146 0.854 10 C 0.312 3.688 11 O -0.460 6.460 12 N -0.360 5.360 13 C -0.010 4.010 14 C 0.004 3.996 15 C -0.565 4.565 16 H 0.083 0.917 17 C -0.175 4.175 18 N -0.554 5.554 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.205 1.205 23 C -0.002 4.002 24 N -0.142 5.142 25 N -0.157 5.157 26 C -0.140 4.140 27 C -0.308 4.308 28 C -0.016 4.016 29 C -0.024 4.024 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.231 0.769 50 H 0.186 0.814 51 H 0.061 0.939 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.745 15.076 -8.639 19.024 hybrid contribution -0.701 -1.527 0.115 1.684 sum -8.446 13.549 -8.524 18.099 Atomic orbital electron populations 1.21772 0.93652 1.01900 1.02650 1.21261 0.96461 0.97229 0.96568 1.21666 1.01341 0.94568 1.01414 1.22256 0.84712 0.98820 1.00309 1.60739 1.07829 1.56484 1.00965 1.21381 0.96064 0.95950 0.94872 1.21764 0.92659 1.02984 0.97658 1.21584 1.03753 0.85422 0.85142 0.85427 1.20300 0.77794 0.85514 0.85158 1.90670 1.57260 1.80304 1.17768 1.50344 1.62153 1.14368 1.09113 1.23432 0.99304 0.79293 0.98937 1.20411 0.96527 0.92381 0.90296 1.21241 1.04469 1.35403 0.95379 0.91666 1.25663 0.96115 0.95996 0.99694 1.70040 1.21963 1.46425 1.16929 0.85587 0.79289 0.78319 0.78937 1.18938 1.21352 1.20521 1.23654 1.01199 0.99421 0.75955 1.48367 1.07975 1.33524 1.24290 1.77285 1.09920 1.11582 1.16962 1.24523 0.95774 0.99022 0.94674 1.21312 0.97161 1.06848 1.05467 1.21238 0.90824 0.97191 0.92345 1.21446 0.89897 0.96792 0.94236 0.92061 0.91525 0.92895 0.91388 0.92920 0.92833 0.92362 0.95443 0.89391 0.95581 0.88570 0.86876 0.89079 0.92272 0.89511 0.94620 0.92663 0.89101 0.91199 0.76902 0.81365 0.93939 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.19 71.98 0.66 -1.22 16 2 C -0.10 -1.58 2.44 -10.80 -0.03 -1.61 16 3 C -0.13 -2.15 8.98 71.98 0.65 -1.50 16 4 C 0.07 1.29 4.44 86.30 0.38 1.68 16 5 N -0.54 -12.94 3.70 -906.54 -3.36 -16.29 16 6 C 0.05 1.18 4.45 86.04 0.38 1.56 16 7 C -0.11 -2.94 4.85 30.16 0.15 -2.79 16 8 C 0.15 4.76 3.67 44.25 0.16 4.92 16 9 H 0.13 4.07 8.14 -2.38 -0.02 4.05 16 10 C 0.52 19.58 4.89 87.66 0.43 20.01 16 11 O -0.58 -25.31 14.74 -3.04 -0.04 -25.36 16 12 N -0.63 -23.00 2.55 -836.70 -2.13 -25.13 16 13 C 0.11 4.32 8.39 86.48 0.73 5.04 16 14 C 0.02 1.01 3.62 -10.87 -0.04 0.97 16 15 C -0.53 -24.99 8.77 25.60 0.22 -24.76 16 16 H 0.07 3.02 7.81 -2.91 -0.02 3.00 16 17 C 0.03 1.27 5.46 84.65 0.46 1.73 16 18 N -0.92 -47.49 13.27 21.45 0.28 -47.21 16 19 Si 0.95 38.97 29.54 68.60 2.03 41.00 16 20 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 21 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 23 C 0.12 4.39 5.70 86.49 0.49 4.89 16 24 N -0.36 -12.04 3.24 -313.85 -1.02 -13.06 16 25 N -0.34 -11.29 12.64 -56.63 -0.72 -12.00 16 26 C 0.05 1.21 12.04 85.26 1.03 2.24 16 27 C -0.28 -7.39 10.77 21.93 0.24 -7.15 16 28 C 0.11 3.43 5.46 41.72 0.23 3.66 16 29 C 0.10 2.89 4.73 85.82 0.41 3.30 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.18 5.91 -2.39 -0.01 1.17 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 1.07 7.20 -2.39 -0.02 1.05 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.09 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.03 0.79 4.82 -2.39 -0.01 0.78 16 40 H 0.10 2.14 7.78 -2.38 -0.02 2.12 16 41 H 0.11 2.71 6.43 -2.39 -0.02 2.69 16 42 H 0.09 2.37 8.09 -2.39 -0.02 2.35 16 43 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.09 3.15 8.09 -2.38 -0.02 3.13 16 45 H 0.04 1.77 8.13 -2.39 -0.02 1.75 16 46 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 47 H 0.09 3.16 8.00 -2.39 -0.02 3.14 16 48 H 0.07 2.54 7.74 -2.39 -0.02 2.52 16 49 H 0.21 3.84 8.06 -2.91 -0.02 3.81 16 50 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 51 H 0.04 1.47 4.99 -2.39 -0.01 1.45 16 52 H 0.12 2.82 5.08 -2.39 -0.01 2.81 16 Total: -1.00 -61.36 396.56 2.50 -58.86 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.91 Total: 28.24 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: 6.55 Total: 10.96 kcal Atomic # 7 Polarization: -106.76 SS G_CDS: -6.94 Total: -113.70 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.04 Total: -25.36 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -61.36 2.50 -58.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278121078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.204 kcal (2) G-P(sol) polarization free energy of solvation -61.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds