Wall clock time and date at job start Wed Apr 1 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47499 * 2 1 4 4 C 1.53003 * 109.47006 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.46925 * 304.99990 * 4 3 2 6 6 C 1.52998 * 109.47075 * 64.99839 * 4 3 2 7 7 C 1.52996 * 109.46966 * 184.99659 * 4 3 2 8 8 N 1.46900 * 109.47092 * 176.63458 * 7 4 3 9 9 C 1.48146 * 111.00181 * 293.98270 * 8 7 4 10 10 C 1.51063 * 105.69553 * 267.80856 * 9 8 7 11 11 N 1.34950 * 144.33520 * 162.77060 * 10 9 8 12 12 H 0.97000 * 124.87345 * 359.97411 * 11 10 9 13 13 N 1.28543 * 110.24153 * 179.97438 * 11 10 9 14 14 C 1.31933 * 110.04903 * 0.02562 * 13 11 10 15 15 C 1.47706 * 126.56647 * 180.02562 * 14 13 11 16 16 O 1.21569 * 120.00557 * 179.97438 * 15 14 13 17 17 N 1.34782 * 120.00180 * 359.96900 * 15 14 13 18 18 C 1.47066 * 136.05281 * 359.63605 * 17 15 14 19 19 C 1.53240 * 88.08186 * 207.20186 * 18 17 15 20 20 C 1.50702 * 114.32482 * 220.47431 * 19 18 17 21 21 H 1.07992 * 120.00511 * 93.75656 * 20 19 18 22 22 C 1.37878 * 119.99591 * 273.75618 * 20 19 18 23 23 N 1.31517 * 120.00253 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 120.00335 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47389 * 89.99959 * 24 22 20 26 26 H 1.48493 * 109.47519 * 210.00395 * 24 22 20 27 27 H 1.48506 * 109.46727 * 329.99861 * 24 22 20 28 28 C 1.47061 * 136.06014 * 179.97438 * 17 15 14 29 29 C 1.35382 * 108.59177 * 342.74368 * 10 9 8 30 30 C 1.48380 * 111.01079 * 179.68715 * 8 7 4 31 31 H 1.09007 * 109.47024 * 60.00036 * 1 2 3 32 32 H 1.08994 * 109.47435 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46890 * 300.00490 * 1 2 3 34 34 H 1.09003 * 109.46890 * 239.99510 * 2 1 3 35 35 H 1.08999 * 109.47000 * 120.00298 * 2 1 3 36 36 H 1.08988 * 109.46996 * 59.99931 * 3 2 1 37 37 H 1.08998 * 109.46510 * 299.99572 * 3 2 1 38 38 H 1.09005 * 109.47118 * 184.45827 * 6 4 3 39 39 H 1.08997 * 109.47490 * 304.45833 * 6 4 3 40 40 H 1.09002 * 109.47219 * 64.46018 * 6 4 3 41 41 H 1.09006 * 109.46783 * 56.63743 * 7 4 3 42 42 H 1.09001 * 109.47654 * 296.64093 * 7 4 3 43 43 H 1.08998 * 110.21918 * 148.73193 * 9 8 7 44 44 H 1.09002 * 110.22131 * 26.88777 * 9 8 7 45 45 H 1.09004 * 113.46975 * 321.92930 * 18 17 15 46 46 H 1.08999 * 113.47374 * 92.37319 * 18 17 15 47 47 H 1.08996 * 114.02133 * 87.71454 * 19 18 17 48 48 H 0.97000 * 120.00239 * 180.02562 * 23 22 20 49 49 H 1.09004 * 113.47089 * 267.62523 * 28 17 15 50 50 H 1.08997 * 113.46859 * 38.07405 * 28 17 15 51 51 H 1.09002 * 110.23432 * 333.21608 * 30 8 7 52 52 H 1.09000 * 110.28140 * 211.30458 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0806 0.8324 -1.3064 7 6 4.0801 2.8793 0.1263 8 7 5.5468 2.8729 0.2080 9 6 6.0062 2.2247 1.4584 10 6 6.1535 3.3400 2.4666 11 7 6.2604 3.6218 3.7820 12 1 6.2586 2.9615 4.4926 13 7 6.3649 4.8909 3.9579 14 6 6.3337 5.5128 2.7947 15 6 6.4263 6.9702 2.5734 16 8 6.3849 7.4174 1.4437 17 7 6.5566 7.8045 3.6239 18 6 6.6356 7.6623 5.0856 19 6 6.0501 9.0735 5.2029 20 6 6.6786 9.9187 6.2807 21 1 7.4971 10.5806 6.0395 22 6 6.2085 9.8469 7.5749 23 7 6.7565 10.5849 8.5155 24 14 4.7930 8.7016 7.9924 25 1 5.3295 7.3715 8.3773 26 1 4.0152 9.2678 9.1236 27 1 3.9090 8.5551 6.8081 28 6 6.6764 9.2579 3.8134 29 6 6.1965 4.5191 1.8027 30 6 6.0792 4.2531 0.3234 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9562 0.8899 37 1 1.6768 1.9562 -0.8900 38 1 5.1677 0.7595 -1.2731 39 1 3.6535 -0.1622 -1.4344 40 1 3.7844 1.4655 -2.1428 41 1 3.6680 3.3336 1.0274 42 1 3.7672 3.4536 -0.7458 43 1 6.9657 1.7332 1.2975 44 1 5.2662 1.5018 1.8019 45 1 5.9796 6.8874 5.4824 46 1 7.6564 7.5833 5.4596 47 1 4.9605 9.1027 5.2098 48 1 6.4260 10.5341 9.4261 49 1 7.7082 9.6080 3.8454 50 1 6.0550 9.8373 3.1307 51 1 5.3895 4.9627 -0.1336 52 1 7.0584 4.3213 -0.1506 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278153873.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:21 Heat of formation + Delta-G solvation = 69.388354 kcal Electronic energy + Delta-G solvation = -30428.915179 eV Core-core repulsion = 26430.795966 eV Total energy + Delta-G solvation = -3998.119213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.13087 -41.13701 -39.95053 -38.83052 -37.36897 -34.70434 -33.64905 -33.23201 -31.35910 -31.01254 -28.99052 -27.64199 -27.49344 -27.11745 -26.78934 -24.60351 -23.67114 -21.95353 -21.77682 -21.43892 -20.66468 -19.78359 -19.15039 -18.80329 -17.90428 -17.49947 -16.88171 -16.76028 -16.47928 -16.14662 -15.88207 -15.78749 -15.62295 -15.10263 -14.79304 -14.65714 -14.27899 -14.17220 -13.91037 -13.85515 -13.57209 -13.44524 -13.18426 -13.09845 -13.06256 -12.82542 -12.78072 -12.64916 -12.52185 -12.36342 -12.25744 -11.85281 -11.82020 -11.67692 -11.44215 -11.32337 -11.28040 -11.19412 -11.08518 -10.69753 -10.56565 -9.98676 -9.72548 -9.65838 -8.29822 -6.36876 0.36047 0.86922 1.37434 1.39795 1.48460 1.50972 1.86292 2.21157 2.35104 2.75642 2.97768 3.00336 3.44263 3.62169 3.80986 3.87720 3.97452 4.04633 4.12100 4.17071 4.25090 4.26885 4.36032 4.44885 4.45604 4.57755 4.58583 4.64006 4.69392 4.72614 4.75033 4.78564 4.80073 4.82921 4.87650 4.90290 4.95529 4.99606 5.09671 5.14173 5.22182 5.27210 5.33662 5.35707 5.42150 5.50250 5.57056 5.57992 5.68397 5.84195 6.00976 6.26354 6.62961 6.65722 6.70846 7.04540 7.30001 8.85424 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.002324 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.768405 B =12044.730482 C =12936.343824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.115 4.115 4 C -0.080 4.080 5 H 0.080 0.920 6 C -0.136 4.136 7 C 0.042 3.958 8 N -0.476 5.476 9 C 0.122 3.878 10 C -0.024 4.024 11 N -0.337 5.337 12 H 0.463 0.537 13 N -0.259 5.259 14 C -0.003 4.003 15 C 0.613 3.387 16 O -0.575 6.575 17 N -0.634 5.634 18 C 0.111 3.889 19 C -0.019 4.019 20 C -0.508 4.508 21 H 0.047 0.953 22 C 0.025 3.975 23 N -0.940 5.940 24 Si 0.934 3.066 25 H -0.261 1.261 26 H -0.286 1.286 27 H -0.250 1.250 28 C 0.118 3.882 29 C -0.220 4.220 30 C 0.116 3.884 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.078 0.922 43 H 0.129 0.871 44 H 0.112 0.888 45 H 0.069 0.931 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.269 0.731 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.071 0.929 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.853 -28.149 -16.279 33.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.099 4.099 5 H 0.098 0.902 6 C -0.193 4.193 7 C -0.086 4.086 8 N -0.196 5.196 9 C -0.008 4.008 10 C -0.154 4.154 11 N -0.052 5.052 12 H 0.311 0.689 13 N -0.097 5.097 14 C -0.162 4.162 15 C 0.402 3.598 16 O -0.455 6.455 17 N -0.367 5.367 18 C -0.011 4.011 19 C -0.039 4.039 20 C -0.546 4.546 21 H 0.065 0.935 22 C -0.174 4.174 23 N -0.579 5.579 24 Si 0.758 3.242 25 H -0.185 1.185 26 H -0.212 1.212 27 H -0.174 1.174 28 C -0.003 4.003 29 C -0.232 4.232 30 C -0.013 4.013 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.096 0.904 43 H 0.147 0.853 44 H 0.130 0.870 45 H 0.088 0.912 46 H 0.099 0.901 47 H 0.085 0.915 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.632 -28.052 -16.257 33.309 hybrid contribution -0.645 0.521 1.141 1.410 sum -8.277 -27.531 -15.116 32.480 Atomic orbital electron populations 1.21801 0.96119 1.01825 1.01578 1.21546 0.95603 0.96217 1.02505 1.21617 0.94523 0.97468 1.01679 1.21148 0.94875 0.93925 0.99930 0.90182 1.21738 1.01678 1.00173 0.95704 1.22533 0.86883 0.98529 1.00664 1.65795 1.10716 1.11399 1.31724 1.21694 1.04752 0.91594 0.82792 1.23396 1.05825 1.00700 0.85501 1.42603 1.50926 1.04818 1.06874 0.68907 1.73919 1.19960 0.91547 1.24224 1.20999 1.11663 0.93313 0.90190 1.16818 0.76404 0.83761 0.82807 1.90706 1.54458 1.77404 1.22888 1.49729 1.69340 1.09751 1.07884 1.23474 1.01474 0.99556 0.76644 1.20795 0.97010 0.93027 0.93044 1.20877 1.17746 1.23646 0.92367 0.93488 1.25775 0.98944 0.96585 0.96123 1.70022 1.43758 1.41629 1.02465 0.85905 0.80093 0.79710 0.78466 1.18548 1.21196 1.17436 1.23083 1.01353 0.79571 0.96331 1.21685 1.10345 0.91896 0.99253 1.21018 1.02105 0.90126 0.88041 0.92859 0.92268 0.93302 0.91070 0.91839 0.92962 0.92091 0.91853 0.92088 0.93488 0.95809 0.90400 0.85330 0.86998 0.91214 0.90074 0.91530 0.92236 0.89768 0.90965 0.91074 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.12 -1.10 5.69 30.59 0.17 -0.93 16 3 C -0.11 -1.25 4.68 30.60 0.14 -1.11 16 4 C -0.08 -0.85 2.31 -10.79 -0.02 -0.87 16 5 H 0.08 0.70 6.22 -2.39 -0.01 0.69 16 6 C -0.14 -1.35 8.86 71.98 0.64 -0.71 16 7 C 0.04 0.64 4.04 86.30 0.35 0.99 16 8 N -0.48 -7.57 5.04 -896.99 -4.52 -12.09 16 9 C 0.12 1.50 6.41 85.43 0.55 2.05 16 10 C -0.02 -0.47 8.16 41.53 0.34 -0.13 16 11 N -0.34 -7.01 6.83 -47.68 -0.33 -7.34 16 12 H 0.46 5.58 8.96 -219.95 -1.97 3.61 16 13 N -0.26 -8.00 10.79 -48.39 -0.52 -8.52 16 14 C 0.00 -0.10 7.10 42.33 0.30 0.20 16 15 C 0.61 25.40 8.08 86.74 0.70 26.10 16 16 O -0.58 -26.12 17.70 -3.93 -0.07 -26.19 16 17 N -0.63 -26.41 3.69 -862.42 -3.18 -29.60 16 18 C 0.11 4.61 6.89 83.09 0.57 5.18 16 19 C -0.02 -0.87 2.99 -11.28 -0.03 -0.90 16 20 C -0.51 -27.35 9.38 25.60 0.24 -27.11 16 21 H 0.05 2.78 8.06 -2.91 -0.02 2.76 16 22 C 0.02 1.36 5.47 84.65 0.46 1.82 16 23 N -0.94 -55.90 13.96 21.45 0.30 -55.60 16 24 Si 0.93 41.87 27.42 68.60 1.88 43.75 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.25 -10.63 6.22 99.48 0.62 -10.01 16 28 C 0.12 4.95 8.19 83.19 0.68 5.63 16 29 C -0.22 -6.13 6.90 -19.81 -0.14 -6.26 16 30 C 0.12 2.65 6.66 85.29 0.57 3.22 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.58 6.47 -2.39 -0.02 0.56 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 0.68 7.83 -2.38 -0.02 0.66 16 39 H 0.06 0.49 6.37 -2.39 -0.02 0.48 16 40 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.02 0.45 8.07 -2.38 -0.02 0.43 16 42 H 0.08 1.27 8.08 -2.39 -0.02 1.26 16 43 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.11 0.87 5.89 -2.39 -0.01 0.86 16 45 H 0.07 2.77 7.51 -2.38 -0.02 2.75 16 46 H 0.08 3.40 8.10 -2.39 -0.02 3.38 16 47 H 0.07 3.03 6.50 -2.39 -0.02 3.01 16 48 H 0.27 14.95 8.31 -92.71 -0.77 14.17 16 49 H 0.08 3.46 8.10 -2.38 -0.02 3.45 16 50 H 0.07 2.87 8.14 -2.39 -0.02 2.86 16 51 H 0.07 1.81 7.76 -2.39 -0.02 1.80 16 52 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.39 411.22 -1.34 -71.74 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -1.14 Total: 17.46 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 6.23 Total: 6.39 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -8.25 Total: -113.14 kcal Atomic # 8 Polarization: -26.12 SS G_CDS: -0.07 Total: -26.19 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.88 Total: 43.75 kcal Total: -70.39 -1.34 -71.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278153873.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.124 kcal (2) G-P(sol) polarization free energy of solvation -70.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds