Wall clock time and date at job start Wed Apr 1 2020 04:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.53003 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47327 * 54.99545 * 4 3 2 6 6 C 1.53003 * 109.47003 * 294.99567 * 4 3 2 7 7 C 1.53007 * 109.46856 * 175.00048 * 4 3 2 8 8 N 1.46901 * 109.47129 * 185.35876 * 7 4 3 9 9 C 1.48149 * 110.99888 * 189.91204 * 8 7 4 10 10 C 1.51067 * 105.61629 * 214.07015 * 9 8 7 11 11 N 1.34946 * 144.32440 * 197.20159 * 10 9 8 12 12 H 0.97004 * 124.88389 * 0.03730 * 11 10 9 13 13 N 1.28545 * 110.23904 * 180.02562 * 11 10 9 14 14 C 1.31932 * 110.04817 * 359.97438 * 13 11 10 15 15 C 1.47712 * 126.56415 * 180.02562 * 14 13 11 16 16 O 1.21570 * 119.99605 * 179.97438 * 15 14 13 17 17 N 1.34776 * 119.99948 * 359.95393 * 15 14 13 18 18 C 1.47067 * 136.05615 * 359.62506 * 17 15 14 19 19 C 1.53241 * 88.08171 * 207.20672 * 18 17 15 20 20 C 1.50696 * 114.32561 * 220.47291 * 19 18 17 21 21 H 1.07995 * 120.00561 * 93.76407 * 20 19 18 22 22 C 1.37878 * 119.99841 * 273.75772 * 20 19 18 23 23 N 1.31514 * 120.00434 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99897 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47392 * 90.00126 * 24 22 20 26 26 H 1.48506 * 109.47066 * 210.00217 * 24 22 20 27 27 H 1.48500 * 109.46783 * 329.99818 * 24 22 20 28 28 C 1.47067 * 136.05808 * 180.02562 * 17 15 14 29 29 C 1.35373 * 108.59848 * 17.22054 * 10 9 8 30 30 C 1.48182 * 110.99936 * 75.50476 * 8 7 4 31 31 H 1.08994 * 109.47018 * 60.00244 * 1 2 3 32 32 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47033 * 299.99660 * 1 2 3 34 34 H 1.08999 * 109.47663 * 119.99996 * 2 1 3 35 35 H 1.09002 * 109.47419 * 239.99964 * 2 1 3 36 36 H 1.09003 * 109.46927 * 299.99963 * 3 2 1 37 37 H 1.08994 * 109.47305 * 59.99832 * 3 2 1 38 38 H 1.09001 * 109.46877 * 305.38403 * 6 4 3 39 39 H 1.08999 * 109.46915 * 65.38097 * 6 4 3 40 40 H 1.08994 * 109.46773 * 185.38286 * 6 4 3 41 41 H 1.09001 * 109.46912 * 305.35297 * 7 4 3 42 42 H 1.08995 * 109.47354 * 65.35409 * 7 4 3 43 43 H 1.09000 * 110.21960 * 333.10066 * 9 8 7 44 44 H 1.08995 * 110.22154 * 95.02776 * 9 8 7 45 45 H 1.08994 * 113.47017 * 321.93756 * 18 17 15 46 46 H 1.09000 * 113.46303 * 92.38157 * 18 17 15 47 47 H 1.09002 * 114.01506 * 87.72205 * 19 18 17 48 48 H 0.96992 * 120.00309 * 180.02562 * 23 22 20 49 49 H 1.08992 * 113.46703 * 267.62548 * 28 17 15 50 50 H 1.08999 * 113.46369 * 38.06371 * 28 17 15 51 51 H 1.09006 * 110.23329 * 264.90295 * 30 8 7 52 52 H 1.08998 * 110.23655 * 26.86757 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8797 -0.1264 8 7 5.5431 2.8705 -0.2560 9 6 6.0948 4.2407 -0.1423 10 6 7.2890 4.2764 -1.0669 11 7 8.4173 4.9495 -1.3747 12 1 8.7296 5.7467 -0.9187 13 7 9.0189 4.3824 -2.3590 14 6 8.3403 3.3220 -2.7535 15 6 8.7018 2.4053 -3.8539 16 8 7.9854 1.4589 -4.1166 17 7 9.8255 2.6183 -4.5668 18 6 10.9079 3.6139 -4.5650 19 6 11.1050 3.3265 -6.0573 20 6 12.5464 3.2718 -6.4938 21 1 13.0645 2.3249 -6.5288 22 6 13.2037 4.4307 -6.8486 23 7 12.5730 5.5840 -6.8056 24 14 14.9902 4.3628 -7.3903 25 1 15.0544 4.1706 -8.8614 26 1 15.6662 5.6343 -7.0273 27 1 15.6701 3.2297 -6.7128 28 6 10.5053 1.9614 -5.6934 29 6 7.2032 3.2315 -1.9233 30 6 5.9531 2.4470 -1.6156 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 3.6409 1.3635 2.1510 39 1 3.7980 -0.2190 1.3514 40 1 5.1662 0.9196 1.3481 41 1 3.6400 3.3454 -1.0082 42 1 3.7974 3.4445 0.7620 43 1 5.3520 4.9733 -0.4581 44 1 6.4065 4.4375 0.8834 45 1 10.5645 4.6282 -4.3616 46 1 11.7613 3.3261 -3.9511 47 1 10.4768 3.9303 -6.7121 48 1 13.0353 6.3992 -7.0555 49 1 11.2502 1.2287 -5.3833 50 1 9.8202 1.5737 -6.4473 51 1 6.1660 1.3780 -1.6292 52 1 5.1713 2.6856 -2.3366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278153874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:27 Heat of formation + Delta-G solvation = 85.976984 kcal Electronic energy + Delta-G solvation = -30015.143883 eV Core-core repulsion = 26017.744007 eV Total energy + Delta-G solvation = -3997.399876 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.89184 -39.25849 -38.96058 -36.93152 -36.71077 -33.06250 -32.66306 -31.92824 -30.43308 -29.15191 -27.93284 -26.95322 -26.22083 -25.40620 -24.85608 -23.31786 -22.62933 -21.34300 -20.67732 -20.05416 -19.82205 -18.03451 -17.64871 -16.81061 -16.39866 -16.12625 -15.80274 -15.42535 -15.17874 -15.00571 -14.63408 -14.59639 -14.28419 -13.95610 -13.70613 -13.50817 -13.24468 -13.03023 -12.66831 -12.55071 -12.43333 -12.17040 -12.10674 -11.89152 -11.84085 -11.77196 -11.43775 -11.24586 -11.24106 -11.02577 -10.90632 -10.83616 -10.74188 -10.72731 -10.57393 -10.28057 -9.73901 -9.32600 -9.26146 -9.15807 -9.00214 -8.53883 -8.38708 -7.79138 -6.13706 -4.19020 1.76155 2.08043 2.56490 3.26562 3.33719 3.36462 3.52294 3.61582 3.86932 4.12167 4.36890 4.41964 4.51488 4.57387 4.72036 4.77621 4.84338 4.94318 5.07748 5.14136 5.15863 5.18316 5.21155 5.33223 5.36733 5.41669 5.49107 5.53043 5.56333 5.63888 5.73559 5.76082 5.85567 5.89970 5.94169 5.98958 6.11383 6.13689 6.23121 6.24487 6.29727 6.36636 6.42874 6.49847 6.65897 6.71180 6.80710 6.96658 7.04920 7.60615 7.84248 7.90797 8.23515 8.51439 8.81861 8.84735 9.47190 10.96056 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.001917 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.568647 B =14605.038821 C =15403.302581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.087 4.087 5 H 0.074 0.926 6 C -0.140 4.140 7 C 0.048 3.952 8 N -0.495 5.495 9 C 0.125 3.875 10 C -0.035 4.035 11 N -0.358 5.358 12 H 0.444 0.556 13 N -0.232 5.232 14 C 0.034 3.966 15 C 0.614 3.386 16 O -0.555 6.555 17 N -0.629 5.629 18 C 0.108 3.892 19 C 0.031 3.969 20 C -0.516 4.516 21 H 0.064 0.936 22 C 0.068 3.932 23 N -0.885 5.885 24 Si 0.895 3.105 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.272 1.272 28 C 0.102 3.898 29 C -0.170 4.170 30 C 0.114 3.886 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.263 0.737 49 H 0.075 0.925 50 H 0.059 0.941 51 H 0.096 0.904 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.492 -2.351 17.617 26.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.106 4.106 5 H 0.093 0.907 6 C -0.198 4.198 7 C -0.081 4.081 8 N -0.219 5.219 9 C -0.004 4.004 10 C -0.163 4.163 11 N -0.070 5.070 12 H 0.288 0.712 13 N -0.067 5.067 14 C -0.127 4.127 15 C 0.401 3.599 16 O -0.434 6.434 17 N -0.362 5.362 18 C -0.014 4.014 19 C 0.012 3.988 20 C -0.554 4.554 21 H 0.082 0.918 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.723 3.277 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.197 1.197 28 C -0.020 4.020 29 C -0.181 4.181 30 C -0.014 4.014 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.114 0.886 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.874 -2.473 17.733 26.015 hybrid contribution 0.252 0.826 -0.384 0.945 sum -18.622 -1.647 17.348 25.504 Atomic orbital electron populations 1.21779 0.96097 1.01506 1.01641 1.21561 0.95551 0.96894 1.02321 1.21649 0.94693 0.97026 1.01876 1.21114 0.94529 0.95274 0.99702 0.90715 1.21773 1.02346 0.99749 0.95897 1.22485 0.86481 0.97845 1.01244 1.65548 1.10961 1.18279 1.27079 1.21001 0.90150 0.91623 0.97657 1.21997 0.93888 0.96982 1.03441 1.42577 1.15682 1.23919 1.24863 0.71197 1.74111 1.21292 1.08973 1.02304 1.21331 0.94414 0.96542 1.00414 1.16388 0.80839 0.83098 0.79573 1.90722 1.52430 1.31213 1.69002 1.49844 1.20761 1.31960 1.33602 1.23539 0.85488 0.91313 1.01039 1.20335 0.96885 0.89993 0.91570 1.20897 0.95037 0.93786 1.45657 0.91797 1.25025 0.98373 0.95427 0.94692 1.69961 1.36832 0.98149 1.47249 0.86542 0.84589 0.77540 0.79040 1.20510 1.21215 1.19702 1.23390 0.93320 0.99530 0.85717 1.20813 0.98761 0.99802 0.98747 1.20943 0.91859 1.00437 0.88160 0.92841 0.92884 0.92913 0.91713 0.91950 0.92127 0.92005 0.93332 0.93127 0.91273 0.93896 0.90340 0.91595 0.88905 0.91425 0.91009 0.91439 0.92720 0.90638 0.92250 0.88592 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.81 5.69 -26.73 -0.15 -0.96 16 3 C -0.11 -0.74 4.68 -26.73 -0.13 -0.86 16 4 C -0.09 -0.66 2.45 -90.61 -0.22 -0.89 16 5 H 0.07 0.67 7.60 -51.93 -0.39 0.28 16 6 C -0.14 -1.07 8.76 37.16 0.33 -0.74 16 7 C 0.05 0.37 4.05 -3.82 -0.02 0.35 16 8 N -0.49 -4.97 4.86 -235.03 -1.14 -6.12 16 9 C 0.13 1.14 6.59 -4.11 -0.03 1.11 16 10 C -0.03 -0.44 8.26 -82.07 -0.68 -1.12 16 11 N -0.36 -4.61 6.83 33.58 0.23 -4.38 16 12 H 0.44 3.86 8.96 -190.39 -1.71 2.15 16 13 N -0.23 -4.05 10.79 33.36 0.36 -3.69 16 14 C 0.03 0.65 7.10 -82.88 -0.59 0.06 16 15 C 0.61 13.45 8.08 -12.39 -0.10 13.35 16 16 O -0.56 -13.08 17.70 5.30 0.09 -12.99 16 17 N -0.63 -13.96 3.69 -186.58 -0.69 -14.65 16 18 C 0.11 2.46 7.35 -8.64 -0.06 2.40 16 19 C 0.03 0.76 3.77 -91.40 -0.34 0.42 16 20 C -0.52 -13.40 8.83 -34.44 -0.30 -13.70 16 21 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.52 13.26 55.43 0.74 -23.79 16 24 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 C 0.10 2.23 8.19 -8.52 -0.07 2.16 16 29 C -0.17 -2.70 6.96 -104.54 -0.73 -3.43 16 30 C 0.11 1.49 5.93 -4.24 -0.03 1.46 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.41 6.69 -51.93 -0.35 0.07 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.05 0.37 6.83 -51.93 -0.35 0.01 16 40 H 0.07 0.63 7.62 -51.93 -0.40 0.24 16 41 H 0.04 0.33 7.66 -51.93 -0.40 -0.06 16 42 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 43 H 0.07 0.50 7.80 -51.93 -0.40 0.09 16 44 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.58 7.51 -51.93 -0.39 1.18 16 46 H 0.07 1.62 8.10 -51.93 -0.42 1.20 16 47 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 48 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 50 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 51 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 52 H 0.06 0.78 7.51 -51.93 -0.39 0.39 16 LS Contribution 418.14 15.07 6.30 6.30 Total: -1.00 -31.25 418.14 -12.21 -43.47 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -10.24 Total: -0.28 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -2.84 Total: 0.80 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.51 Total: -52.62 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.25 -12.21 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278153874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.443 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds