Wall clock time and date at job start Wed Apr 1 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47069 * 2 1 4 4 C 1.53003 * 109.47065 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47327 * 54.99545 * 4 3 2 6 6 C 1.53003 * 109.47003 * 294.99567 * 4 3 2 7 7 C 1.53007 * 109.46856 * 175.00048 * 4 3 2 8 8 N 1.46901 * 109.47129 * 185.35876 * 7 4 3 9 9 C 1.48149 * 110.99888 * 189.91204 * 8 7 4 10 10 C 1.51067 * 105.61629 * 214.07015 * 9 8 7 11 11 N 1.34946 * 144.32440 * 197.20159 * 10 9 8 12 12 H 0.97004 * 124.88389 * 0.03730 * 11 10 9 13 13 N 1.28545 * 110.23904 * 180.02562 * 11 10 9 14 14 C 1.31932 * 110.04817 * 359.97438 * 13 11 10 15 15 C 1.47712 * 126.56415 * 180.02562 * 14 13 11 16 16 O 1.21570 * 119.99605 * 179.97438 * 15 14 13 17 17 N 1.34776 * 119.99948 * 359.95393 * 15 14 13 18 18 C 1.47067 * 136.05615 * 359.62506 * 17 15 14 19 19 C 1.53241 * 88.08171 * 207.20672 * 18 17 15 20 20 C 1.50696 * 114.32561 * 220.47291 * 19 18 17 21 21 H 1.07995 * 120.00561 * 93.76407 * 20 19 18 22 22 C 1.37878 * 119.99841 * 273.75772 * 20 19 18 23 23 N 1.31514 * 120.00434 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99897 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47392 * 90.00126 * 24 22 20 26 26 H 1.48506 * 109.47066 * 210.00217 * 24 22 20 27 27 H 1.48500 * 109.46783 * 329.99818 * 24 22 20 28 28 C 1.47067 * 136.05808 * 180.02562 * 17 15 14 29 29 C 1.35373 * 108.59848 * 17.22054 * 10 9 8 30 30 C 1.48182 * 110.99936 * 75.50476 * 8 7 4 31 31 H 1.08994 * 109.47018 * 60.00244 * 1 2 3 32 32 H 1.09003 * 109.46847 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47033 * 299.99660 * 1 2 3 34 34 H 1.08999 * 109.47663 * 119.99996 * 2 1 3 35 35 H 1.09002 * 109.47419 * 239.99964 * 2 1 3 36 36 H 1.09003 * 109.46927 * 299.99963 * 3 2 1 37 37 H 1.08994 * 109.47305 * 59.99832 * 3 2 1 38 38 H 1.09001 * 109.46877 * 305.38403 * 6 4 3 39 39 H 1.08999 * 109.46915 * 65.38097 * 6 4 3 40 40 H 1.08994 * 109.46773 * 185.38286 * 6 4 3 41 41 H 1.09001 * 109.46912 * 305.35297 * 7 4 3 42 42 H 1.08995 * 109.47354 * 65.35409 * 7 4 3 43 43 H 1.09000 * 110.21960 * 333.10066 * 9 8 7 44 44 H 1.08995 * 110.22154 * 95.02776 * 9 8 7 45 45 H 1.08994 * 113.47017 * 321.93756 * 18 17 15 46 46 H 1.09000 * 113.46303 * 92.38157 * 18 17 15 47 47 H 1.09002 * 114.01506 * 87.72205 * 19 18 17 48 48 H 0.96992 * 120.00309 * 180.02562 * 23 22 20 49 49 H 1.08992 * 113.46703 * 267.62548 * 28 17 15 50 50 H 1.08999 * 113.46369 * 38.06371 * 28 17 15 51 51 H 1.09006 * 110.23329 * 264.90295 * 30 8 7 52 52 H 1.08998 * 110.23655 * 26.86757 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8532 -0.8426 6 6 4.0805 0.8328 1.3065 7 6 4.0799 2.8797 -0.1264 8 7 5.5431 2.8705 -0.2560 9 6 6.0948 4.2407 -0.1423 10 6 7.2890 4.2764 -1.0669 11 7 8.4173 4.9495 -1.3747 12 1 8.7296 5.7467 -0.9187 13 7 9.0189 4.3824 -2.3590 14 6 8.3403 3.3220 -2.7535 15 6 8.7018 2.4053 -3.8539 16 8 7.9854 1.4589 -4.1166 17 7 9.8255 2.6183 -4.5668 18 6 10.9079 3.6139 -4.5650 19 6 11.1050 3.3265 -6.0573 20 6 12.5464 3.2718 -6.4938 21 1 13.0645 2.3249 -6.5288 22 6 13.2037 4.4307 -6.8486 23 7 12.5730 5.5840 -6.8056 24 14 14.9902 4.3628 -7.3903 25 1 15.0544 4.1706 -8.8614 26 1 15.6662 5.6343 -7.0273 27 1 15.6701 3.2297 -6.7128 28 6 10.5053 1.9614 -5.6934 29 6 7.2032 3.2315 -1.9233 30 6 5.9531 2.4470 -1.6156 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 1.6766 1.9564 -0.8900 37 1 1.6766 1.9564 0.8899 38 1 3.6409 1.3635 2.1510 39 1 3.7980 -0.2190 1.3514 40 1 5.1662 0.9196 1.3481 41 1 3.6400 3.3454 -1.0082 42 1 3.7974 3.4445 0.7620 43 1 5.3520 4.9733 -0.4581 44 1 6.4065 4.4375 0.8834 45 1 10.5645 4.6282 -4.3616 46 1 11.7613 3.3261 -3.9511 47 1 10.4768 3.9303 -6.7121 48 1 13.0353 6.3992 -7.0555 49 1 11.2502 1.2287 -5.3833 50 1 9.8202 1.5737 -6.4473 51 1 6.1660 1.3780 -1.6292 52 1 5.1713 2.6856 -2.3366 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278153874.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:26 Heat of formation + Delta-G solvation = 66.479751 kcal Electronic energy + Delta-G solvation = -30015.989346 eV Core-core repulsion = 26017.744007 eV Total energy + Delta-G solvation = -3998.245340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.06489 -41.00740 -39.80457 -38.72882 -37.37233 -34.66363 -33.71480 -33.22574 -31.36890 -30.82403 -28.94679 -27.53760 -27.33111 -26.91933 -26.70439 -24.64300 -23.59097 -21.99360 -21.88148 -21.55480 -20.57882 -19.65970 -18.78668 -18.69693 -17.75811 -17.41085 -16.82273 -16.60938 -16.44281 -16.25948 -16.00643 -15.78724 -15.43890 -14.97426 -14.64030 -14.37175 -14.32138 -14.13585 -14.02946 -13.92593 -13.34373 -13.27360 -13.18548 -13.06201 -13.03193 -12.80075 -12.73674 -12.65542 -12.45741 -12.31879 -12.20215 -12.02619 -11.77453 -11.58195 -11.42878 -11.29329 -11.18812 -11.05589 -10.92171 -10.54976 -10.54096 -10.26672 -9.60282 -9.30454 -8.15995 -6.27758 0.39788 0.89858 1.47800 1.48858 1.52701 1.59399 1.93925 2.24647 2.46727 2.79849 3.01871 3.13903 3.47026 3.52132 3.85657 3.98555 4.02153 4.16257 4.25918 4.28754 4.35209 4.37357 4.39364 4.41875 4.50953 4.56435 4.59897 4.68095 4.70364 4.76250 4.81542 4.83043 4.85295 4.88952 4.98019 4.99765 5.02961 5.08082 5.11407 5.17886 5.22891 5.30659 5.37485 5.44871 5.52440 5.57654 5.60709 5.70646 5.80854 5.90942 6.06724 6.22628 6.66599 6.75149 6.80932 7.10635 7.42037 8.94265 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023029 B = 0.001917 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.568647 B =14605.038821 C =15403.302581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.086 4.086 5 H 0.053 0.947 6 C -0.135 4.135 7 C 0.048 3.952 8 N -0.496 5.496 9 C 0.128 3.872 10 C -0.005 4.005 11 N -0.336 5.336 12 H 0.463 0.537 13 N -0.256 5.256 14 C -0.003 4.003 15 C 0.609 3.391 16 O -0.580 6.580 17 N -0.635 5.635 18 C 0.128 3.872 19 C 0.022 3.978 20 C -0.528 4.528 21 H 0.070 0.930 22 C 0.020 3.980 23 N -0.919 5.919 24 Si 0.962 3.038 25 H -0.276 1.276 26 H -0.285 1.285 27 H -0.264 1.264 28 C 0.108 3.892 29 C -0.204 4.204 30 C 0.121 3.879 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.038 0.962 48 H 0.264 0.736 49 H 0.089 0.911 50 H 0.063 0.937 51 H 0.074 0.926 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.252 -1.448 19.920 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.146 4.146 4 C -0.105 4.105 5 H 0.071 0.929 6 C -0.193 4.193 7 C -0.079 4.079 8 N -0.220 5.220 9 C -0.001 4.001 10 C -0.134 4.134 11 N -0.052 5.052 12 H 0.312 0.688 13 N -0.093 5.093 14 C -0.162 4.162 15 C 0.399 3.601 16 O -0.461 6.461 17 N -0.367 5.367 18 C 0.005 3.995 19 C 0.003 3.997 20 C -0.566 4.566 21 H 0.088 0.912 22 C -0.180 4.180 23 N -0.557 5.557 24 Si 0.787 3.213 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.188 1.188 28 C -0.013 4.013 29 C -0.215 4.215 30 C -0.007 4.007 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.142 0.858 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.056 0.944 48 H 0.073 0.927 49 H 0.107 0.893 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.632 -1.568 20.047 28.103 hybrid contribution 0.397 0.557 -1.039 1.244 sum -19.235 -1.011 19.008 27.061 Atomic orbital electron populations 1.21769 0.95477 1.01716 1.01944 1.21565 0.96099 0.96990 1.01817 1.21596 0.93618 0.96974 1.02437 1.21085 0.95377 0.95170 0.98881 0.92873 1.21718 1.01247 0.99981 0.96331 1.22577 0.84860 0.98033 1.02472 1.65581 1.12627 1.19168 1.24670 1.21318 0.88834 0.91562 0.98384 1.22587 0.93606 0.94847 1.02373 1.42618 1.15281 1.23878 1.23400 0.68829 1.73999 1.22271 1.09114 1.03921 1.21044 0.96616 0.97486 1.01058 1.16852 0.80059 0.83304 0.79932 1.90683 1.52920 1.32457 1.69992 1.49853 1.21027 1.31869 1.33946 1.23216 0.85631 0.90951 0.99703 1.20206 0.96167 0.91317 0.91999 1.21196 0.95689 0.94121 1.45558 0.91235 1.25806 1.02452 0.95013 0.94740 1.70081 1.38517 0.98773 1.48317 0.85497 0.79570 0.77631 0.78592 1.20157 1.21079 1.18806 1.23303 0.93564 0.98504 0.85957 1.21153 0.99172 1.01962 0.99176 1.20826 0.90893 0.99034 0.89958 0.92934 0.92790 0.92174 0.91628 0.93116 0.92176 0.90714 0.91989 0.93252 0.92921 0.93577 0.87832 0.88813 0.85756 0.92419 0.90842 0.94395 0.92680 0.89299 0.91824 0.90720 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.91 71.98 0.71 -0.86 16 2 C -0.13 -1.52 5.69 30.59 0.17 -1.35 16 3 C -0.11 -1.20 4.68 30.60 0.14 -1.05 16 4 C -0.09 -1.19 2.45 -10.79 -0.03 -1.22 16 5 H 0.05 0.97 7.60 -2.39 -0.02 0.95 16 6 C -0.14 -1.86 8.76 71.98 0.63 -1.23 16 7 C 0.05 0.61 4.05 86.31 0.35 0.96 16 8 N -0.50 -8.85 4.86 -897.51 -4.36 -13.21 16 9 C 0.13 1.82 6.59 85.43 0.56 2.38 16 10 C 0.00 -0.10 8.26 41.53 0.34 0.24 16 11 N -0.34 -8.09 6.83 -47.68 -0.33 -8.42 16 12 H 0.46 6.91 8.96 -219.95 -1.97 4.94 16 13 N -0.26 -8.94 10.79 -48.38 -0.52 -9.46 16 14 C 0.00 -0.13 7.10 42.33 0.30 0.17 16 15 C 0.61 27.67 8.08 86.75 0.70 28.37 16 16 O -0.58 -28.42 17.70 -3.94 -0.07 -28.49 16 17 N -0.63 -29.02 3.69 -862.49 -3.18 -32.21 16 18 C 0.13 5.95 7.35 83.09 0.61 6.56 16 19 C 0.02 1.13 3.77 -11.30 -0.04 1.08 16 20 C -0.53 -27.67 8.83 25.60 0.23 -27.44 16 21 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 22 C 0.02 1.07 5.46 84.65 0.46 1.53 16 23 N -0.92 -51.72 13.26 21.45 0.28 -51.44 16 24 Si 0.96 41.63 29.54 68.60 2.03 43.66 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 28 C 0.11 4.83 8.19 83.17 0.68 5.51 16 29 C -0.20 -6.40 6.96 -19.81 -0.14 -6.54 16 30 C 0.12 3.14 5.93 85.33 0.51 3.65 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.77 6.69 -2.39 -0.02 0.75 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.05 0.68 6.83 -2.39 -0.02 0.66 16 40 H 0.05 0.90 7.62 -2.39 -0.02 0.89 16 41 H 0.05 0.59 7.66 -2.39 -0.02 0.57 16 42 H 0.10 0.86 8.08 -2.39 -0.02 0.84 16 43 H 0.09 0.94 7.80 -2.39 -0.02 0.92 16 44 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 2.78 7.51 -2.39 -0.02 2.76 16 46 H 0.07 3.38 8.10 -2.39 -0.02 3.36 16 47 H 0.04 2.11 8.11 -2.39 -0.02 2.09 16 48 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 49 H 0.09 3.70 8.10 -2.39 -0.02 3.68 16 50 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 51 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 52 H 0.06 1.55 7.51 -2.39 -0.02 1.53 16 Total: -1.00 -69.56 418.14 -1.01 -70.57 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -1.06 Total: 18.22 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.20 Total: 10.78 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -8.11 Total: -114.73 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.07 Total: -28.49 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.56 -1.01 -70.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278153874.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.050 kcal (2) G-P(sol) polarization free energy of solvation -69.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds