Wall clock time and date at job start Wed Apr 1 2020 04:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46678 * 2 1 4 4 C 1.52998 * 109.47467 * 239.99896 * 2 1 3 5 5 C 1.52993 * 109.47255 * 184.99532 * 4 2 1 6 6 N 1.46903 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.46985 * 110.99965 * 170.00280 * 6 5 4 8 8 C 1.53410 * 109.59900 * 53.43725 * 7 6 5 9 9 N 1.46492 * 108.25969 * 49.51410 * 8 7 6 10 10 C 1.37308 * 128.57964 * 163.68205 * 9 8 7 11 11 C 1.46762 * 126.94150 * 0.13390 * 10 9 8 12 12 O 1.21680 * 119.99502 * 354.46347 * 11 10 9 13 13 N 1.34770 * 120.00064 * 174.45666 * 11 10 9 14 14 C 1.47068 * 136.05880 * 4.07702 * 13 11 10 15 15 C 1.53239 * 88.08449 * 207.20068 * 14 13 11 16 16 C 1.50704 * 114.32675 * 220.47099 * 15 14 13 17 17 H 1.07996 * 119.99741 * 93.75582 * 16 15 14 18 18 C 1.37875 * 119.99555 * 273.75907 * 16 15 14 19 19 N 1.31511 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99530 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47586 * 89.99676 * 20 18 16 22 22 H 1.48502 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47291 * 329.99642 * 20 18 16 24 24 C 1.47072 * 136.05737 * 184.44566 * 13 11 10 25 25 C 1.36920 * 106.12351 * 180.15795 * 10 9 8 26 26 N 1.33529 * 107.85698 * 359.95773 * 25 10 9 27 27 C 1.30353 * 109.67039 * 359.96684 * 26 25 10 28 28 C 1.47300 * 110.99891 * 294.17430 * 6 5 4 29 29 H 1.09004 * 109.46831 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47033 * 299.99670 * 1 2 3 31 31 H 1.09001 * 109.47125 * 60.00187 * 1 2 3 32 32 H 1.09001 * 109.47125 * 119.99813 * 2 1 3 33 33 H 1.08997 * 109.47024 * 60.00550 * 3 2 1 34 34 H 1.09003 * 109.46722 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47198 * 299.99780 * 3 2 1 36 36 H 1.08999 * 109.46842 * 305.00095 * 4 2 1 37 37 H 1.09006 * 109.46681 * 64.99570 * 4 2 1 38 38 H 1.08999 * 109.47655 * 300.00064 * 5 4 2 39 39 H 1.09007 * 109.46798 * 60.00671 * 5 4 2 40 40 H 1.09007 * 109.44806 * 173.47109 * 7 6 5 41 41 H 1.08991 * 109.44930 * 293.39528 * 7 6 5 42 42 H 1.09000 * 109.70738 * 169.20946 * 8 7 6 43 43 H 1.09007 * 109.70369 * 289.78048 * 8 7 6 44 44 H 1.08994 * 113.46687 * 321.93415 * 14 13 11 45 45 H 1.09000 * 113.46916 * 92.37402 * 14 13 11 46 46 H 1.09003 * 114.19526 * 87.72525 * 15 14 13 47 47 H 0.97005 * 119.99969 * 180.02562 * 19 18 16 48 48 H 1.08999 * 113.46206 * 267.62772 * 24 13 11 49 49 H 1.08998 * 113.46665 * 38.05856 * 24 13 11 50 50 H 1.08000 * 126.06544 * 179.97438 * 25 10 9 51 51 H 1.09004 * 109.73187 * 45.80379 * 28 6 5 52 52 H 1.09001 * 109.72830 * 166.48207 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.8309 -1.1879 6 7 4.0546 -1.5229 -2.3876 7 6 5.5190 -1.4397 -2.4828 8 6 6.1489 -1.9423 -1.1774 9 7 5.5445 -3.2343 -0.8439 10 6 5.9915 -4.1864 0.0388 11 6 7.2010 -4.1221 0.8677 12 8 7.9784 -3.1950 0.7386 13 7 7.4504 -5.0898 1.7719 14 6 6.8230 -6.3613 2.1626 15 6 7.4184 -6.1661 3.5611 16 6 7.9610 -7.4256 4.1860 17 1 9.0068 -7.6736 4.0802 18 6 7.1223 -8.2611 4.8927 19 7 5.8490 -7.9588 5.0219 20 14 7.7951 -9.8218 5.6679 21 1 8.2592 -9.5289 7.0478 22 1 6.7267 -10.8522 5.7133 23 1 8.9342 -10.3251 4.8590 24 6 8.4662 -5.3360 2.8066 25 6 5.0814 -5.2081 -0.0108 26 7 4.1338 -4.8701 -0.8887 27 6 4.3986 -3.6963 -1.3900 28 6 3.5987 -2.9233 -2.4124 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6055 -1.7198 -1.2951 37 1 1.7516 -0.1583 -2.1369 38 1 3.9995 0.1676 -1.1420 39 1 3.8532 -1.3939 -0.3002 40 1 5.8643 -2.0557 -3.3132 41 1 5.8134 -0.4041 -2.6527 42 1 7.2240 -2.0628 -1.3107 43 1 5.9557 -1.2278 -0.3772 44 1 5.7335 -6.3302 2.1482 45 1 7.2275 -7.2251 1.6352 46 1 6.7905 -5.5857 4.2370 47 1 5.2590 -8.5465 5.5194 48 1 9.3129 -5.9239 2.4524 49 1 8.7712 -4.4348 3.3385 50 1 5.1226 -6.1245 0.5593 51 1 2.5388 -2.9698 -2.1621 52 1 3.7621 -3.3460 -3.4037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278178694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:20 Heat of formation + Delta-G solvation = 63.116652 kcal Electronic energy + Delta-G solvation = -31141.493015 eV Core-core repulsion = 27143.101841 eV Total energy + Delta-G solvation = -3998.391175 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.52379 -39.49661 -38.71173 -37.10394 -36.48010 -33.77157 -32.75553 -31.00321 -30.14050 -29.62884 -28.23233 -27.43894 -25.97260 -25.25118 -24.77354 -23.92302 -22.69830 -21.73417 -20.56448 -20.23428 -19.01081 -18.53421 -17.11728 -16.76129 -16.42621 -16.25947 -15.92111 -15.75875 -15.18695 -14.87788 -14.78841 -14.61355 -14.40372 -14.08371 -13.90059 -13.75414 -13.41352 -13.06860 -12.83944 -12.72427 -12.56744 -12.45495 -12.24483 -12.19261 -11.89806 -11.71987 -11.61305 -11.59142 -11.36458 -10.98089 -10.95851 -10.89577 -10.87765 -10.72662 -10.40747 -10.21257 -9.70116 -9.64408 -9.29440 -9.12641 -8.94496 -8.62762 -8.40758 -7.94742 -6.21641 -4.28019 1.48174 2.41434 2.92403 3.22496 3.30385 3.32254 3.38540 3.55532 3.66390 4.06423 4.28725 4.30984 4.41924 4.52090 4.61078 4.71163 4.76898 4.92916 4.97944 5.05829 5.07976 5.13375 5.24035 5.31907 5.32267 5.33434 5.38205 5.41069 5.46752 5.55034 5.61931 5.63006 5.71681 5.74126 5.88746 5.92371 6.03692 6.06715 6.08359 6.11896 6.22619 6.34766 6.41585 6.47940 6.51755 6.58728 6.63381 6.81182 7.05419 7.49258 7.75515 7.98949 8.11843 8.31850 8.59583 8.76143 9.39321 10.87956 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.002491 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.853200 B =11237.890937 C =11998.665385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.148 4.148 4 C -0.110 4.110 5 C 0.044 3.956 6 N -0.528 5.528 7 C 0.040 3.960 8 C 0.070 3.930 9 N -0.425 5.425 10 C -0.060 4.060 11 C 0.608 3.392 12 O -0.573 6.573 13 N -0.629 5.629 14 C 0.092 3.908 15 C 0.037 3.963 16 C -0.519 4.519 17 H 0.065 0.935 18 C 0.069 3.931 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.106 3.894 25 C 0.031 3.969 26 N -0.483 5.483 27 C 0.181 3.819 28 C 0.137 3.863 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.265 0.735 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.187 0.813 51 H 0.111 0.889 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 15.037 -14.410 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.084 4.084 6 N -0.249 5.249 7 C -0.089 4.089 8 C -0.054 4.054 9 N -0.108 5.108 10 C -0.177 4.177 11 C 0.398 3.602 12 O -0.455 6.455 13 N -0.361 5.361 14 C -0.030 4.030 15 C 0.017 3.983 16 C -0.557 4.557 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.520 5.520 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.015 4.015 25 C -0.122 4.122 26 N -0.202 5.202 27 C -0.083 4.083 28 C 0.007 3.993 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.105 0.895 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.204 0.796 51 H 0.129 0.871 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.151 15.559 -15.199 23.228 hybrid contribution 1.415 -0.930 1.432 2.217 sum -6.736 14.629 -13.767 21.188 Atomic orbital electron populations 1.21816 0.94935 1.01885 1.01680 1.21096 0.95985 0.96356 0.98286 1.21889 1.00994 0.95932 1.01717 1.21664 0.93800 1.01052 0.98278 1.22358 0.96513 0.98895 0.90611 1.62502 1.09958 1.12812 1.39625 1.22675 0.86921 1.03511 0.95743 1.22729 1.00760 0.82495 0.99384 1.45005 1.19454 1.15475 1.30819 1.20699 1.01423 0.93386 1.02190 1.16223 0.83430 0.82260 0.78285 1.90723 1.49754 1.35569 1.69466 1.49641 1.31597 1.21159 1.33711 1.23806 0.98346 0.82757 0.98070 1.20303 0.92035 0.95224 0.90702 1.20869 0.95698 1.05255 1.33883 0.91731 1.25028 0.94821 0.98253 0.95373 1.69946 1.03843 1.37701 1.40496 0.86524 0.78760 0.82603 0.79744 1.20486 1.21087 1.19678 1.23420 0.93642 0.98605 0.85881 1.23234 0.90716 0.99611 0.98645 1.69862 1.27101 1.11292 1.11927 1.24335 0.88821 0.93711 1.01409 1.21079 0.98607 0.84247 0.95332 0.92575 0.92717 0.92662 0.91294 0.92813 0.92681 0.92577 0.91568 0.90822 0.90022 0.94207 0.89210 0.87734 0.87516 0.89456 0.91516 0.90169 0.91241 0.92516 0.90498 0.92235 0.79602 0.87079 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.10 -0.79 2.92 -90.62 -0.26 -1.05 16 3 C -0.15 -1.06 8.95 37.16 0.33 -0.72 16 4 C -0.11 -0.89 4.64 -26.74 -0.12 -1.01 16 5 C 0.04 0.40 3.78 -3.83 -0.01 0.38 16 6 N -0.53 -4.73 4.97 -235.15 -1.17 -5.90 16 7 C 0.04 0.34 5.96 -3.56 -0.02 0.32 16 8 C 0.07 0.85 5.51 -3.83 -0.02 0.83 16 9 N -0.43 -6.55 2.90 -109.69 -0.32 -6.86 16 10 C -0.06 -1.11 6.94 -82.45 -0.57 -1.69 16 11 C 0.61 12.50 8.04 -12.82 -0.10 12.40 16 12 O -0.57 -12.63 16.27 5.21 0.08 -12.55 16 13 N -0.63 -12.94 3.69 -186.91 -0.69 -13.63 16 14 C 0.09 1.92 6.70 -8.64 -0.06 1.86 16 15 C 0.04 0.84 3.77 -91.39 -0.34 0.50 16 16 C -0.52 -12.92 8.82 -34.44 -0.30 -13.22 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -23.72 13.26 55.43 0.74 -22.99 16 20 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 C 0.11 2.17 8.19 -8.50 -0.07 2.10 16 25 C 0.03 0.56 11.00 -17.29 -0.19 0.37 16 26 N -0.48 -8.27 11.19 -10.32 -0.12 -8.39 16 27 C 0.18 2.62 6.98 -155.31 -1.08 1.54 16 28 C 0.14 1.40 6.07 -4.57 -0.03 1.37 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.40 6.57 -51.93 -0.34 0.05 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.57 6.30 -51.93 -0.33 0.25 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.66 6.50 -51.93 -0.34 0.32 16 39 H 0.04 0.47 6.24 -51.93 -0.32 0.15 16 40 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.11 1.41 7.38 -51.93 -0.38 1.03 16 43 H 0.09 1.07 7.21 -51.92 -0.37 0.70 16 44 H 0.07 1.38 6.18 -51.93 -0.32 1.06 16 45 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 46 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 47 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.19 3.30 5.26 -52.49 -0.28 3.03 16 51 H 0.11 1.05 5.99 -51.93 -0.31 0.74 16 52 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 403.63 15.07 6.08 6.08 Total: -1.00 -29.67 403.63 -11.48 -41.15 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.45 Total: 3.34 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.62 Total: 4.93 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -1.56 Total: -57.76 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.67 -11.48 -41.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278178694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.270 kcal (2) G-P(sol) polarization free energy of solvation -29.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds