Wall clock time and date at job start Wed Apr 1 2020 04:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46678 * 2 1 4 4 C 1.52998 * 109.47467 * 239.99896 * 2 1 3 5 5 C 1.52993 * 109.47255 * 184.99532 * 4 2 1 6 6 N 1.46903 * 109.47010 * 180.02562 * 5 4 2 7 7 C 1.46985 * 110.99965 * 170.00280 * 6 5 4 8 8 C 1.53410 * 109.59900 * 53.43725 * 7 6 5 9 9 N 1.46492 * 108.25969 * 49.51410 * 8 7 6 10 10 C 1.37308 * 128.57964 * 163.68205 * 9 8 7 11 11 C 1.46762 * 126.94150 * 0.13390 * 10 9 8 12 12 O 1.21680 * 119.99502 * 354.46347 * 11 10 9 13 13 N 1.34770 * 120.00064 * 174.45666 * 11 10 9 14 14 C 1.47068 * 136.05880 * 4.07702 * 13 11 10 15 15 C 1.53239 * 88.08449 * 207.20068 * 14 13 11 16 16 C 1.50704 * 114.32675 * 220.47099 * 15 14 13 17 17 H 1.07996 * 119.99741 * 93.75582 * 16 15 14 18 18 C 1.37875 * 119.99555 * 273.75907 * 16 15 14 19 19 N 1.31511 * 120.00355 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99530 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47586 * 89.99676 * 20 18 16 22 22 H 1.48502 * 109.47178 * 209.99936 * 20 18 16 23 23 H 1.48500 * 109.47291 * 329.99642 * 20 18 16 24 24 C 1.47072 * 136.05737 * 184.44566 * 13 11 10 25 25 C 1.36920 * 106.12351 * 180.15795 * 10 9 8 26 26 N 1.33529 * 107.85698 * 359.95773 * 25 10 9 27 27 C 1.30353 * 109.67039 * 359.96684 * 26 25 10 28 28 C 1.47300 * 110.99891 * 294.17430 * 6 5 4 29 29 H 1.09004 * 109.46831 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47033 * 299.99670 * 1 2 3 31 31 H 1.09001 * 109.47125 * 60.00187 * 1 2 3 32 32 H 1.09001 * 109.47125 * 119.99813 * 2 1 3 33 33 H 1.08997 * 109.47024 * 60.00550 * 3 2 1 34 34 H 1.09003 * 109.46722 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47198 * 299.99780 * 3 2 1 36 36 H 1.08999 * 109.46842 * 305.00095 * 4 2 1 37 37 H 1.09006 * 109.46681 * 64.99570 * 4 2 1 38 38 H 1.08999 * 109.47655 * 300.00064 * 5 4 2 39 39 H 1.09007 * 109.46798 * 60.00671 * 5 4 2 40 40 H 1.09007 * 109.44806 * 173.47109 * 7 6 5 41 41 H 1.08991 * 109.44930 * 293.39528 * 7 6 5 42 42 H 1.09000 * 109.70738 * 169.20946 * 8 7 6 43 43 H 1.09007 * 109.70369 * 289.78048 * 8 7 6 44 44 H 1.08994 * 113.46687 * 321.93415 * 14 13 11 45 45 H 1.09000 * 113.46916 * 92.37402 * 14 13 11 46 46 H 1.09003 * 114.19526 * 87.72525 * 15 14 13 47 47 H 0.97005 * 119.99969 * 180.02562 * 19 18 16 48 48 H 1.08999 * 113.46206 * 267.62772 * 24 13 11 49 49 H 1.08998 * 113.46665 * 38.05856 * 24 13 11 50 50 H 1.08000 * 126.06544 * 179.97438 * 25 10 9 51 51 H 1.09004 * 109.73187 * 45.80379 * 28 6 5 52 52 H 1.09001 * 109.72830 * 166.48207 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5648 -0.8309 -1.1879 6 7 4.0546 -1.5229 -2.3876 7 6 5.5190 -1.4397 -2.4828 8 6 6.1489 -1.9423 -1.1774 9 7 5.5445 -3.2343 -0.8439 10 6 5.9915 -4.1864 0.0388 11 6 7.2010 -4.1221 0.8677 12 8 7.9784 -3.1950 0.7386 13 7 7.4504 -5.0898 1.7719 14 6 6.8230 -6.3613 2.1626 15 6 7.4184 -6.1661 3.5611 16 6 7.9610 -7.4256 4.1860 17 1 9.0068 -7.6736 4.0802 18 6 7.1223 -8.2611 4.8927 19 7 5.8490 -7.9588 5.0219 20 14 7.7951 -9.8218 5.6679 21 1 8.2592 -9.5289 7.0478 22 1 6.7267 -10.8522 5.7133 23 1 8.9342 -10.3251 4.8590 24 6 8.4662 -5.3360 2.8066 25 6 5.0814 -5.2081 -0.0108 26 7 4.1338 -4.8701 -0.8887 27 6 4.3986 -3.6963 -1.3900 28 6 3.5987 -2.9233 -2.4124 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6055 -1.7198 -1.2951 37 1 1.7516 -0.1583 -2.1369 38 1 3.9995 0.1676 -1.1420 39 1 3.8532 -1.3939 -0.3002 40 1 5.8643 -2.0557 -3.3132 41 1 5.8134 -0.4041 -2.6527 42 1 7.2240 -2.0628 -1.3107 43 1 5.9557 -1.2278 -0.3772 44 1 5.7335 -6.3302 2.1482 45 1 7.2275 -7.2251 1.6352 46 1 6.7905 -5.5857 4.2370 47 1 5.2590 -8.5465 5.5194 48 1 9.3129 -5.9239 2.4524 49 1 8.7712 -4.4348 3.3385 50 1 5.1226 -6.1245 0.5593 51 1 2.5388 -2.9698 -2.1621 52 1 3.7621 -3.3460 -3.4037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278178694.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:19 Heat of formation + Delta-G solvation = 45.696948 kcal Electronic energy + Delta-G solvation = -31142.248390 eV Core-core repulsion = 27143.101841 eV Total energy + Delta-G solvation = -3999.146550 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.74808 -41.11148 -39.62841 -38.79212 -37.19088 -34.86452 -34.66331 -32.32174 -31.06250 -30.91989 -29.48241 -28.01267 -27.32571 -26.98282 -26.14207 -24.74289 -24.10168 -22.79033 -22.09534 -21.00406 -20.36405 -19.69708 -18.84508 -18.27409 -17.69039 -17.48862 -17.00618 -16.64987 -16.61414 -16.24626 -16.21549 -15.65361 -15.58580 -15.26621 -14.99323 -14.64107 -14.59709 -14.30283 -14.10460 -14.03913 -13.68816 -13.46251 -13.32596 -13.22811 -13.02758 -12.99342 -12.76169 -12.66056 -12.57592 -12.47093 -12.26115 -12.18639 -11.76404 -11.59008 -11.52716 -11.37345 -11.27638 -11.07248 -10.93427 -10.86106 -10.55907 -9.86526 -9.78308 -9.52532 -8.17425 -6.29090 0.09890 1.18044 1.47692 1.50140 1.59168 1.60657 2.00007 2.13106 2.45928 2.65401 3.03612 3.12022 3.24638 3.46730 3.70507 3.74548 3.91710 3.95539 4.02568 4.06010 4.14671 4.22982 4.24544 4.29203 4.32155 4.40353 4.46318 4.55066 4.61744 4.62551 4.64391 4.71202 4.73787 4.80205 4.81545 4.84073 4.94554 4.95320 5.01947 5.05066 5.09789 5.12443 5.29708 5.33482 5.44269 5.48875 5.56474 5.68387 5.75014 5.79544 5.91179 6.19686 6.63539 6.70173 6.80008 6.96891 7.41281 8.92491 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013893 B = 0.002491 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.853200 B =11237.890937 C =11998.665385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 C -0.145 4.145 4 C -0.104 4.104 5 C 0.047 3.953 6 N -0.514 5.514 7 C 0.048 3.952 8 C 0.066 3.934 9 N -0.426 5.426 10 C -0.090 4.090 11 C 0.607 3.393 12 O -0.592 6.592 13 N -0.632 5.632 14 C 0.108 3.892 15 C 0.026 3.974 16 C -0.527 4.527 17 H 0.070 0.930 18 C 0.022 3.978 19 N -0.917 5.917 20 Si 0.959 3.041 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.263 1.263 24 C 0.114 3.886 25 C 0.029 3.971 26 N -0.509 5.509 27 C 0.200 3.800 28 C 0.137 3.863 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.008 0.992 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.040 0.960 47 H 0.265 0.735 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.182 0.818 51 H 0.122 0.878 52 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 15.994 -16.534 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.141 4.141 5 C -0.080 4.080 6 N -0.234 5.234 7 C -0.080 4.080 8 C -0.057 4.057 9 N -0.108 5.108 10 C -0.206 4.206 11 C 0.399 3.601 12 O -0.476 6.476 13 N -0.364 5.364 14 C -0.014 4.014 15 C 0.007 3.993 16 C -0.565 4.565 17 H 0.088 0.912 18 C -0.179 4.179 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.008 4.008 25 C -0.125 4.125 26 N -0.228 5.228 27 C -0.064 4.064 28 C 0.007 3.993 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.026 0.974 40 H 0.119 0.881 41 H 0.153 0.847 42 H 0.113 0.887 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.081 0.919 50 H 0.199 0.801 51 H 0.140 0.860 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.363 16.537 -17.333 25.374 hybrid contribution 1.447 -1.133 2.070 2.769 sum -6.915 15.404 -15.263 22.761 Atomic orbital electron populations 1.21803 0.94307 1.01736 1.02308 1.21086 0.96536 0.96807 0.97413 1.21867 1.00878 0.95239 1.02285 1.21614 0.92908 1.00891 0.98717 1.22361 0.97340 0.99059 0.89285 1.62587 1.10139 1.11671 1.38994 1.22820 0.86177 1.05344 0.93699 1.22977 1.00386 0.81006 1.01282 1.45232 1.19634 1.15938 1.29987 1.20447 1.01345 0.94999 1.03840 1.16475 0.83867 0.81626 0.78170 1.90696 1.50597 1.36106 1.70212 1.49600 1.31561 1.21202 1.34008 1.23556 0.98055 0.83186 0.96628 1.20165 0.92975 0.94975 0.91199 1.21175 0.95962 1.05650 1.33691 0.91175 1.25769 0.94995 1.01142 0.95993 1.70062 1.04999 1.38884 1.41585 0.85539 0.78180 0.79013 0.78831 1.20334 1.21202 1.18741 1.23320 0.93402 0.98472 0.85560 1.23226 0.91003 0.99506 0.98807 1.69875 1.27284 1.12957 1.12658 1.25278 0.88053 0.92802 1.00301 1.21445 0.98490 0.84357 0.95011 0.93127 0.92689 0.91441 0.93562 0.92909 0.92826 0.91364 0.92245 0.89358 0.88594 0.97358 0.88117 0.84653 0.88702 0.89886 0.91943 0.89433 0.94227 0.92624 0.89105 0.91911 0.80132 0.86012 0.85250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 2 C -0.10 -1.49 2.92 -10.79 -0.03 -1.52 16 3 C -0.15 -1.84 8.95 71.98 0.64 -1.19 16 4 C -0.10 -1.46 4.64 30.59 0.14 -1.32 16 5 C 0.05 0.76 3.78 86.30 0.33 1.09 16 6 N -0.51 -7.67 4.97 -897.88 -4.46 -12.12 16 7 C 0.05 0.68 5.96 86.42 0.52 1.20 16 8 C 0.07 1.55 5.51 86.52 0.48 2.03 16 9 N -0.43 -12.98 2.90 -500.96 -1.45 -14.43 16 10 C -0.09 -3.36 6.94 40.21 0.28 -3.09 16 11 C 0.61 25.45 8.04 86.47 0.69 26.15 16 12 O -0.59 -26.48 16.27 -4.29 -0.07 -26.55 16 13 N -0.63 -26.49 3.69 -863.48 -3.19 -29.68 16 14 C 0.11 4.59 6.70 83.09 0.56 5.14 16 15 C 0.03 1.24 3.77 -11.29 -0.04 1.19 16 16 C -0.53 -26.38 8.82 25.60 0.23 -26.15 16 17 H 0.07 3.37 7.81 -2.91 -0.02 3.35 16 18 C 0.02 1.11 5.46 84.65 0.46 1.57 16 19 N -0.92 -50.27 13.26 21.45 0.28 -49.99 16 20 Si 0.96 40.67 29.54 68.60 2.03 42.70 16 21 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 23 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 24 C 0.11 4.71 8.19 83.18 0.68 5.39 16 25 C 0.03 1.05 11.00 84.13 0.93 1.98 16 26 N -0.51 -17.35 11.19 -186.56 -2.09 -19.44 16 27 C 0.20 5.60 6.98 138.28 0.97 6.57 16 28 C 0.14 2.44 6.07 85.60 0.52 2.96 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.68 6.57 -2.39 -0.02 0.67 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.93 6.30 -2.39 -0.02 0.91 16 37 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.10 1.30 6.50 -2.39 -0.02 1.29 16 39 H 0.01 0.19 6.24 -2.38 -0.01 0.17 16 40 H 0.10 1.30 8.08 -2.38 -0.02 1.28 16 41 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 2.47 7.38 -2.39 -0.02 2.45 16 43 H 0.08 2.00 7.21 -2.38 -0.02 1.99 16 44 H 0.06 2.70 6.18 -2.39 -0.01 2.68 16 45 H 0.09 3.58 8.10 -2.39 -0.02 3.57 16 46 H 0.04 2.09 8.11 -2.39 -0.02 2.07 16 47 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 48 H 0.09 3.50 8.10 -2.39 -0.02 3.48 16 49 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 50 H 0.18 6.68 5.26 -2.91 -0.02 6.67 16 51 H 0.12 2.00 5.99 -2.39 -0.01 1.98 16 52 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -64.64 403.63 -0.03 -64.67 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.92 Total: 24.12 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: 8.00 Total: 20.72 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -10.90 Total: -125.66 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.07 Total: -26.55 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -64.64 -0.03 -64.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278178694.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.366 kcal (2) G-P(sol) polarization free energy of solvation -64.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds