Wall clock time and date at job start Wed Apr 1 2020 05:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46900 * 2 1 4 4 C 1.53000 * 109.47262 * 179.97438 * 3 2 1 5 5 N 1.46892 * 109.47364 * 179.97438 * 4 3 2 6 6 C 1.46967 * 110.99965 * 45.79844 * 5 4 3 7 7 C 1.53395 * 109.68328 * 52.96436 * 6 5 4 8 8 N 1.46637 * 108.28001 * 49.67819 * 7 6 5 9 9 C 1.34594 * 128.39007 * 163.11996 * 8 7 6 10 10 C 1.36659 * 106.73965 * 180.63647 * 9 8 7 11 11 C 1.47323 * 126.20113 * 180.18135 * 10 9 8 12 12 O 1.21625 * 119.99766 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99901 * 179.97438 * 11 10 9 14 14 C 1.47064 * 136.05826 * 359.63658 * 13 11 10 15 15 C 1.53758 * 87.89015 * 152.95970 * 14 13 11 16 16 C 1.50694 * 114.08920 * 139.77715 * 15 14 13 17 17 H 1.07993 * 120.00234 * 266.55664 * 16 15 14 18 18 C 1.37876 * 119.99851 * 86.56191 * 16 15 14 19 19 N 1.31514 * 120.00084 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00163 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46779 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47110 * 119.99573 * 20 18 16 23 23 H 1.48496 * 109.47203 * 240.00165 * 20 18 16 24 24 C 1.47068 * 136.05378 * 179.97438 * 13 11 10 25 25 N 1.35960 * 107.59513 * 0.15515 * 10 9 8 26 26 C 1.29583 * 108.84093 * 359.96354 * 25 10 9 27 27 C 1.47312 * 111.00215 * 169.99893 * 5 4 3 28 28 H 1.08998 * 109.78905 * 166.55732 * 27 5 4 29 29 C 1.53009 * 109.73906 * 45.87216 * 27 5 4 30 30 H 1.08993 * 109.47174 * 60.00183 * 1 2 3 31 31 H 1.09008 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47069 * 299.99678 * 1 2 3 33 33 H 1.08995 * 109.46960 * 240.00053 * 2 1 3 34 34 H 1.09001 * 109.47507 * 119.99812 * 2 1 3 35 35 H 1.09003 * 109.46997 * 60.00278 * 3 2 1 36 36 H 1.08993 * 109.47057 * 299.99888 * 3 2 1 37 37 H 1.09008 * 109.46627 * 59.99822 * 4 3 2 38 38 H 1.09003 * 109.47221 * 300.00467 * 4 3 2 39 39 H 1.09002 * 109.43889 * 173.03006 * 6 5 4 40 40 H 1.09000 * 109.43628 * 292.90054 * 6 5 4 41 41 H 1.08996 * 109.71083 * 169.55570 * 7 6 5 42 42 H 1.08996 * 109.71531 * 290.15023 * 7 6 5 43 43 H 1.08002 * 126.63332 * 0.90466 * 9 8 7 44 44 H 1.09003 * 113.46559 * 267.68412 * 14 13 11 45 45 H 1.08996 * 113.47297 * 38.13018 * 14 13 11 46 46 H 1.09004 * 114.57159 * 272.66120 * 15 14 13 47 47 H 0.96999 * 119.99891 * 180.02562 * 19 18 16 48 48 H 1.08995 * 113.47239 * 321.87318 * 24 13 11 49 49 H 1.09009 * 113.46695 * 92.25541 * 24 13 11 50 50 H 1.09000 * 109.47069 * 301.38603 * 29 27 5 51 51 H 1.09000 * 109.47071 * 61.39143 * 29 27 5 52 52 H 1.09001 * 109.46639 * 181.39049 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8275 0.0000 6 6 3.3328 3.6435 0.9829 7 6 3.3805 2.9622 2.3564 8 7 4.7734 2.6062 2.6450 9 6 5.3256 2.2845 3.8296 10 6 6.6507 2.0469 3.5945 11 6 7.6563 1.6574 4.5983 12 8 7.3318 1.5192 5.7623 13 7 8.9355 1.4531 4.2265 14 6 9.6942 1.5086 2.9679 15 6 10.9454 1.8284 3.8024 16 6 12.1961 1.1360 3.3257 17 1 12.4858 0.1884 3.7551 18 6 12.9707 1.7124 2.3415 19 7 12.6177 2.8662 1.8183 20 14 14.5215 0.8546 1.7510 21 1 14.6956 -0.4196 2.4937 22 1 14.4070 0.5696 0.2981 23 1 15.6950 1.7319 1.9924 24 6 10.1858 1.0708 4.9000 25 7 6.8727 2.2345 2.2664 26 6 5.7568 2.5689 1.6988 27 6 5.5123 2.8740 0.2394 28 1 5.8939 3.8671 0.0020 29 6 6.2133 1.8294 -0.6315 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9336 0.9286 -0.8892 38 1 3.9329 0.9289 0.8908 39 1 3.7956 4.6281 1.0501 40 1 2.2950 3.7521 0.6677 41 1 3.0077 3.6459 3.1190 42 1 2.7691 2.0601 2.3408 43 1 4.8186 2.2215 4.7811 44 1 9.7500 0.5499 2.4521 45 1 9.3881 2.3236 2.3120 46 1 11.0925 2.8881 4.0110 47 1 13.1625 3.2716 1.1255 48 1 10.2984 1.5127 5.8899 49 1 10.3708 -0.0035 4.8947 50 1 5.8203 0.8396 -0.3989 51 1 6.0342 2.0537 -1.6830 52 1 7.2848 1.8507 -0.4328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278224317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:21 Heat of formation + Delta-G solvation = 68.834949 kcal Electronic energy + Delta-G solvation = -31303.065078 eV Core-core repulsion = 27304.921867 eV Total energy + Delta-G solvation = -3998.143211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.59297 -39.41918 -38.74559 -36.77963 -35.28113 -34.62204 -32.57322 -31.58153 -30.08366 -29.34870 -28.61485 -27.72171 -25.30320 -24.80128 -24.69269 -23.43427 -22.30092 -22.00372 -21.16136 -20.02453 -18.94083 -18.32170 -17.18162 -16.90911 -16.58773 -16.00367 -15.78373 -15.65879 -15.42784 -14.85621 -14.64861 -14.51862 -14.28774 -14.05206 -13.87955 -13.60604 -13.37320 -13.15550 -12.98673 -12.78745 -12.31355 -12.07619 -12.06866 -11.97484 -11.87495 -11.75174 -11.53651 -11.32650 -11.24041 -11.19721 -11.16196 -10.95060 -10.86947 -10.71372 -10.27632 -10.02924 -9.68861 -9.59273 -9.07721 -8.93220 -8.86975 -8.46270 -8.39597 -7.64491 -6.06880 -4.11756 1.77021 2.43951 2.60783 3.29485 3.36844 3.37867 3.41663 3.72904 4.02920 4.08437 4.16072 4.35020 4.37357 4.42579 4.52784 4.56887 4.66716 4.76405 4.89582 4.93145 5.03466 5.12694 5.14769 5.20649 5.22105 5.28701 5.29133 5.37508 5.44951 5.52642 5.58910 5.65707 5.71095 5.79946 5.85624 5.90059 6.08343 6.17061 6.19811 6.35269 6.39162 6.44136 6.52580 6.56665 6.63953 6.84199 6.88836 7.06284 7.17913 7.68740 7.91409 7.99158 8.31636 8.65788 8.91500 8.96541 9.53784 11.02892 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.002626 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.753166 B =10661.302763 C =11627.319873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.125 4.125 4 C 0.044 3.956 5 N -0.523 5.523 6 C 0.038 3.962 7 C 0.063 3.937 8 N -0.458 5.458 9 C 0.028 3.972 10 C -0.044 4.044 11 C 0.615 3.385 12 O -0.575 6.575 13 N -0.626 5.626 14 C 0.115 3.885 15 C 0.031 3.969 16 C -0.514 4.514 17 H 0.063 0.937 18 C 0.068 3.932 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.284 1.284 24 C 0.100 3.900 25 N -0.426 5.426 26 C 0.167 3.833 27 C 0.172 3.828 28 H 0.112 0.888 29 C -0.141 4.141 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.185 0.815 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.067 0.933 47 H 0.262 0.738 48 H 0.056 0.944 49 H 0.073 0.927 50 H 0.058 0.942 51 H 0.071 0.929 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.004 0.051 -6.961 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.163 4.163 4 C -0.083 4.083 5 N -0.245 5.245 6 C -0.091 4.091 7 C -0.061 4.061 8 N -0.142 5.142 9 C -0.110 4.110 10 C -0.173 4.173 11 C 0.405 3.595 12 O -0.456 6.456 13 N -0.357 5.357 14 C -0.007 4.007 15 C 0.011 3.989 16 C -0.552 4.552 17 H 0.081 0.919 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.721 3.279 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 C -0.022 4.022 25 N -0.145 5.145 26 C -0.098 4.098 27 C 0.062 3.938 28 H 0.129 0.871 29 C -0.200 4.200 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.107 0.893 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.202 0.798 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.768 0.279 -7.312 25.827 hybrid contribution 0.050 -0.665 0.979 1.184 sum -24.718 -0.386 -6.334 25.520 Atomic orbital electron populations 1.21756 0.95590 1.01743 1.01776 1.21491 0.96030 0.96470 1.02329 1.21860 0.94384 0.97342 1.02692 1.22344 0.95085 0.88929 1.01976 1.62630 1.03040 1.11574 1.47270 1.22635 1.01658 0.97600 0.87202 1.22836 0.80371 1.02147 1.00766 1.45249 1.09663 1.51488 1.07754 1.22303 0.94341 1.04264 0.90098 1.20764 0.92788 1.12227 0.91570 1.16402 0.79846 0.77482 0.85816 1.90714 1.79901 1.56460 1.18553 1.49748 1.05781 1.64574 1.15583 1.23540 0.89254 1.00626 0.87304 1.20436 0.91596 0.96960 0.89875 1.20937 1.07109 1.06341 1.20858 0.91902 1.25021 0.97614 0.94686 0.96226 1.69981 1.38647 1.16617 1.26827 0.86515 0.83034 0.79741 0.78590 1.19626 1.20933 1.20974 1.23377 0.80378 0.99943 0.98465 1.70473 1.23715 1.14830 1.05445 1.24491 0.83764 1.06647 0.94903 1.20503 0.87164 1.02042 0.84057 0.87074 1.21870 1.02002 0.97225 0.98856 0.92608 0.92690 0.92859 0.91663 0.92157 0.91819 0.90699 0.89491 0.94223 0.89265 0.87623 0.88602 0.89168 0.79803 0.91426 0.91070 0.91506 0.92816 0.92536 0.90925 0.92346 0.90989 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.13 -0.74 5.93 -26.73 -0.16 -0.89 16 3 C -0.13 -0.73 4.22 -26.73 -0.11 -0.84 16 4 C 0.04 0.35 3.29 -3.83 -0.01 0.34 16 5 N -0.52 -4.43 5.01 -227.17 -1.14 -5.57 16 6 C 0.04 0.25 5.32 -3.58 -0.02 0.23 16 7 C 0.06 0.48 6.07 -3.76 -0.02 0.46 16 8 N -0.46 -5.72 2.86 -113.35 -0.32 -6.05 16 9 C 0.03 0.43 11.37 -16.91 -0.19 0.24 16 10 C -0.04 -0.85 6.95 -82.91 -0.58 -1.43 16 11 C 0.62 13.88 8.06 -12.57 -0.10 13.78 16 12 O -0.57 -13.88 17.66 5.26 0.09 -13.78 16 13 N -0.63 -14.46 3.69 -186.36 -0.69 -15.14 16 14 C 0.12 2.73 7.35 -8.37 -0.06 2.66 16 15 C 0.03 0.77 3.80 -91.13 -0.35 0.42 16 16 C -0.51 -13.69 8.82 -34.44 -0.30 -14.00 16 17 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.88 -24.98 13.26 55.43 0.74 -24.24 16 20 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.10 2.28 8.17 -8.51 -0.07 2.21 16 25 N -0.43 -7.91 9.67 -6.97 -0.07 -7.97 16 26 C 0.17 2.41 6.27 -154.62 -0.97 1.44 16 27 C 0.17 1.92 3.23 -68.45 -0.22 1.70 16 28 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 29 C -0.14 -1.56 8.49 37.16 0.32 -1.25 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.32 4.98 -51.93 -0.26 0.06 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.70 6.89 -51.92 -0.36 0.35 16 38 H 0.04 0.40 6.39 -51.93 -0.33 0.07 16 39 H 0.09 0.63 8.07 -51.93 -0.42 0.21 16 40 H 0.11 0.47 6.69 -51.93 -0.35 0.12 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.09 0.61 5.76 -51.93 -0.30 0.31 16 43 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 44 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 45 H 0.07 1.76 7.43 -51.93 -0.39 1.37 16 46 H 0.07 1.83 8.11 -51.93 -0.42 1.41 16 47 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.07 1.57 8.10 -51.92 -0.42 1.15 16 50 H 0.06 0.65 6.48 -51.93 -0.34 0.31 16 51 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 406.46 15.07 6.13 6.13 Total: -1.00 -32.54 406.46 -11.48 -44.02 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.62 Total: 0.52 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: -2.58 Total: 6.42 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -1.48 Total: -58.97 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.54 -11.48 -44.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278224317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.859 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds