Wall clock time and date at job start Wed Apr 1 2020 05:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46900 * 2 1 4 4 C 1.53000 * 109.47262 * 179.97438 * 3 2 1 5 5 N 1.46892 * 109.47364 * 179.97438 * 4 3 2 6 6 C 1.46967 * 110.99965 * 45.79844 * 5 4 3 7 7 C 1.53395 * 109.68328 * 52.96436 * 6 5 4 8 8 N 1.46637 * 108.28001 * 49.67819 * 7 6 5 9 9 C 1.34594 * 128.39007 * 163.11996 * 8 7 6 10 10 C 1.36659 * 106.73965 * 180.63647 * 9 8 7 11 11 C 1.47323 * 126.20113 * 180.18135 * 10 9 8 12 12 O 1.21625 * 119.99766 * 0.02562 * 11 10 9 13 13 N 1.34773 * 119.99901 * 179.97438 * 11 10 9 14 14 C 1.47064 * 136.05826 * 359.63658 * 13 11 10 15 15 C 1.53758 * 87.89015 * 152.95970 * 14 13 11 16 16 C 1.50694 * 114.08920 * 139.77715 * 15 14 13 17 17 H 1.07993 * 120.00234 * 266.55664 * 16 15 14 18 18 C 1.37876 * 119.99851 * 86.56191 * 16 15 14 19 19 N 1.31514 * 120.00084 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00163 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46779 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47110 * 119.99573 * 20 18 16 23 23 H 1.48496 * 109.47203 * 240.00165 * 20 18 16 24 24 C 1.47068 * 136.05378 * 179.97438 * 13 11 10 25 25 N 1.35960 * 107.59513 * 0.15515 * 10 9 8 26 26 C 1.29583 * 108.84093 * 359.96354 * 25 10 9 27 27 C 1.47312 * 111.00215 * 169.99893 * 5 4 3 28 28 H 1.08998 * 109.78905 * 166.55732 * 27 5 4 29 29 C 1.53009 * 109.73906 * 45.87216 * 27 5 4 30 30 H 1.08993 * 109.47174 * 60.00183 * 1 2 3 31 31 H 1.09008 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47069 * 299.99678 * 1 2 3 33 33 H 1.08995 * 109.46960 * 240.00053 * 2 1 3 34 34 H 1.09001 * 109.47507 * 119.99812 * 2 1 3 35 35 H 1.09003 * 109.46997 * 60.00278 * 3 2 1 36 36 H 1.08993 * 109.47057 * 299.99888 * 3 2 1 37 37 H 1.09008 * 109.46627 * 59.99822 * 4 3 2 38 38 H 1.09003 * 109.47221 * 300.00467 * 4 3 2 39 39 H 1.09002 * 109.43889 * 173.03006 * 6 5 4 40 40 H 1.09000 * 109.43628 * 292.90054 * 6 5 4 41 41 H 1.08996 * 109.71083 * 169.55570 * 7 6 5 42 42 H 1.08996 * 109.71531 * 290.15023 * 7 6 5 43 43 H 1.08002 * 126.63332 * 0.90466 * 9 8 7 44 44 H 1.09003 * 113.46559 * 267.68412 * 14 13 11 45 45 H 1.08996 * 113.47297 * 38.13018 * 14 13 11 46 46 H 1.09004 * 114.57159 * 272.66120 * 15 14 13 47 47 H 0.96999 * 119.99891 * 180.02562 * 19 18 16 48 48 H 1.08995 * 113.47239 * 321.87318 * 24 13 11 49 49 H 1.09009 * 113.46695 * 92.25541 * 24 13 11 50 50 H 1.09000 * 109.47069 * 301.38603 * 29 27 5 51 51 H 1.09000 * 109.47071 * 61.39143 * 29 27 5 52 52 H 1.09001 * 109.46639 * 181.39049 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8275 0.0000 6 6 3.3328 3.6435 0.9829 7 6 3.3805 2.9622 2.3564 8 7 4.7734 2.6062 2.6450 9 6 5.3256 2.2845 3.8296 10 6 6.6507 2.0469 3.5945 11 6 7.6563 1.6574 4.5983 12 8 7.3318 1.5192 5.7623 13 7 8.9355 1.4531 4.2265 14 6 9.6942 1.5086 2.9679 15 6 10.9454 1.8284 3.8024 16 6 12.1961 1.1360 3.3257 17 1 12.4858 0.1884 3.7551 18 6 12.9707 1.7124 2.3415 19 7 12.6177 2.8662 1.8183 20 14 14.5215 0.8546 1.7510 21 1 14.6956 -0.4196 2.4937 22 1 14.4070 0.5696 0.2981 23 1 15.6950 1.7319 1.9924 24 6 10.1858 1.0708 4.9000 25 7 6.8727 2.2345 2.2664 26 6 5.7568 2.5689 1.6988 27 6 5.5123 2.8740 0.2394 28 1 5.8939 3.8671 0.0020 29 6 6.2133 1.8294 -0.6315 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9336 0.9286 -0.8892 38 1 3.9329 0.9289 0.8908 39 1 3.7956 4.6281 1.0501 40 1 2.2950 3.7521 0.6677 41 1 3.0077 3.6459 3.1190 42 1 2.7691 2.0601 2.3408 43 1 4.8186 2.2215 4.7811 44 1 9.7500 0.5499 2.4521 45 1 9.3881 2.3236 2.3120 46 1 11.0925 2.8881 4.0110 47 1 13.1625 3.2716 1.1255 48 1 10.2984 1.5127 5.8899 49 1 10.3708 -0.0035 4.8947 50 1 5.8203 0.8396 -0.3989 51 1 6.0342 2.0537 -1.6830 52 1 7.2848 1.8507 -0.4328 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278224317.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:20 Heat of formation + Delta-G solvation = 48.327295 kcal Electronic energy + Delta-G solvation = -31303.954356 eV Core-core repulsion = 27304.921867 eV Total energy + Delta-G solvation = -3999.032489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.69460 -40.99686 -39.82533 -38.58945 -35.82957 -35.57975 -34.63003 -32.53800 -31.02971 -30.94451 -29.63332 -28.63568 -27.17145 -26.63856 -25.44151 -24.59566 -23.34274 -22.89957 -21.90038 -21.67965 -19.98295 -19.70157 -18.80712 -18.32556 -17.70595 -17.30939 -16.93851 -16.74150 -16.58313 -16.22933 -16.03926 -15.90231 -15.41843 -15.10826 -14.89800 -14.61757 -14.28981 -14.21692 -14.04557 -13.91097 -13.67378 -13.41453 -13.25158 -13.17274 -12.90308 -12.81876 -12.75311 -12.59000 -12.53288 -12.37998 -12.18136 -12.15648 -11.78994 -11.76587 -11.55210 -11.43523 -11.29301 -11.02473 -10.82128 -10.77247 -10.50106 -9.78259 -9.65055 -9.39712 -8.14391 -6.26415 0.47335 1.29411 1.45690 1.46812 1.48815 1.60688 2.07444 2.44084 2.49556 2.66117 3.01247 3.14878 3.39288 3.60413 3.68322 3.80294 3.87018 4.02470 4.11125 4.14361 4.22066 4.24613 4.27489 4.38434 4.40570 4.40979 4.41550 4.54820 4.64121 4.67406 4.68696 4.76893 4.78634 4.87035 4.89002 4.91772 4.96980 5.00569 5.05083 5.10688 5.13670 5.25519 5.27116 5.37163 5.40151 5.47301 5.58269 5.73942 5.82084 5.85545 5.99378 6.24248 6.74972 6.81805 6.85153 7.21984 7.43095 8.96222 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.002626 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.753166 B =10661.302763 C =11627.319873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.116 4.116 4 C 0.047 3.953 5 N -0.515 5.515 6 C 0.036 3.964 7 C 0.055 3.945 8 N -0.447 5.447 9 C 0.055 3.945 10 C -0.097 4.097 11 C 0.611 3.389 12 O -0.597 6.597 13 N -0.634 5.634 14 C 0.137 3.863 15 C 0.023 3.977 16 C -0.527 4.527 17 H 0.068 0.932 18 C 0.018 3.982 19 N -0.919 5.919 20 Si 0.963 3.037 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.281 1.281 24 C 0.108 3.892 25 N -0.471 5.471 26 C 0.173 3.827 27 C 0.174 3.826 28 H 0.114 0.886 29 C -0.135 4.135 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.017 0.983 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.124 0.876 42 H 0.106 0.894 43 H 0.208 0.792 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.264 0.736 48 H 0.061 0.939 49 H 0.085 0.915 50 H 0.054 0.946 51 H 0.093 0.907 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.590 0.050 -7.916 28.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.080 4.080 5 N -0.237 5.237 6 C -0.092 4.092 7 C -0.067 4.067 8 N -0.128 5.128 9 C -0.087 4.087 10 C -0.225 4.225 11 C 0.403 3.597 12 O -0.481 6.481 13 N -0.365 5.365 14 C 0.014 3.986 15 C 0.004 3.996 16 C -0.565 4.565 17 H 0.086 0.914 18 C -0.182 4.182 19 N -0.557 5.557 20 Si 0.788 3.212 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.207 1.207 24 C -0.014 4.014 25 N -0.189 5.189 26 C -0.093 4.093 27 C 0.063 3.937 28 H 0.132 0.868 29 C -0.193 4.193 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.035 0.965 39 H 0.108 0.892 40 H 0.158 0.842 41 H 0.142 0.858 42 H 0.124 0.876 43 H 0.225 0.775 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.054 0.946 47 H 0.073 0.927 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.073 0.927 51 H 0.112 0.888 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -27.393 0.280 -8.273 28.616 hybrid contribution 0.707 -0.626 1.256 1.572 sum -26.686 -0.347 -7.017 27.596 Atomic orbital electron populations 1.21740 0.94764 1.01858 1.02331 1.21481 0.96698 0.96499 1.01666 1.21807 0.92329 0.97426 1.03766 1.22339 0.96698 0.88276 1.00735 1.62665 1.01251 1.12041 1.47699 1.22848 1.03244 0.96971 0.86124 1.23316 0.77489 1.03628 1.02232 1.45539 1.11322 1.49660 1.06320 1.22555 0.92979 1.01516 0.91616 1.20507 0.93739 1.16528 0.91734 1.16913 0.79920 0.76546 0.86342 1.90669 1.80244 1.57574 1.19625 1.49758 1.06397 1.65360 1.14963 1.23149 0.88626 0.99689 0.87119 1.20295 0.92204 0.95449 0.91680 1.21218 1.07686 1.06594 1.21009 0.91379 1.25838 1.00780 0.95279 0.96298 1.70105 1.40044 1.18086 1.27452 0.85435 0.78891 0.78818 0.78079 1.18677 1.20497 1.20692 1.23263 0.80032 1.00283 0.97866 1.70355 1.26344 1.16739 1.05499 1.25063 0.83252 1.04744 0.96289 1.20610 0.89235 1.01909 0.81956 0.86795 1.21784 1.00089 0.97232 1.00183 0.92015 0.92897 0.92298 0.92075 0.93215 0.90406 0.89786 0.89878 0.96514 0.89173 0.84214 0.85830 0.87638 0.77505 0.91661 0.92729 0.94616 0.92666 0.92062 0.89673 0.92737 0.88827 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.43 16 2 C -0.13 -1.20 5.93 30.59 0.18 -1.02 16 3 C -0.12 -0.96 4.22 30.59 0.13 -0.83 16 4 C 0.05 0.65 3.29 86.30 0.28 0.93 16 5 N -0.52 -7.41 5.01 -872.62 -4.37 -11.78 16 6 C 0.04 0.35 5.32 86.42 0.46 0.81 16 7 C 0.05 0.63 6.07 86.49 0.52 1.16 16 8 N -0.45 -10.37 2.86 -512.51 -1.47 -11.84 16 9 C 0.05 1.62 11.37 83.90 0.95 2.57 16 10 C -0.10 -3.84 6.95 40.53 0.28 -3.55 16 11 C 0.61 28.44 8.06 86.63 0.70 29.14 16 12 O -0.60 -29.41 17.66 -4.11 -0.07 -29.48 16 13 N -0.63 -30.43 3.69 -861.78 -3.18 -33.61 16 14 C 0.14 6.81 7.35 83.27 0.61 7.42 16 15 C 0.02 1.21 3.80 -11.12 -0.04 1.17 16 16 C -0.53 -28.62 8.82 25.60 0.23 -28.39 16 17 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 18 C 0.02 0.99 5.46 84.65 0.46 1.45 16 19 N -0.92 -53.31 13.26 21.45 0.28 -53.02 16 20 Si 0.96 42.73 29.54 68.60 2.03 44.75 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.11 5.02 8.17 83.18 0.68 5.70 16 25 N -0.47 -18.05 9.67 -175.96 -1.70 -19.75 16 26 C 0.17 4.95 6.27 138.03 0.86 5.82 16 27 C 0.17 3.72 3.23 44.21 0.14 3.87 16 28 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 29 C -0.13 -2.99 8.49 71.99 0.61 -2.38 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.44 4.98 -2.39 -0.01 0.42 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 1.22 6.89 -2.38 -0.02 1.20 16 38 H 0.02 0.31 6.39 -2.39 -0.02 0.30 16 39 H 0.09 0.94 8.07 -2.39 -0.02 0.92 16 40 H 0.14 0.50 6.69 -2.39 -0.02 0.48 16 41 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.00 5.76 -2.39 -0.01 0.98 16 43 H 0.21 4.99 8.06 -2.91 -0.02 4.96 16 44 H 0.07 3.23 8.10 -2.39 -0.02 3.21 16 45 H 0.05 2.87 7.43 -2.39 -0.02 2.85 16 46 H 0.04 2.08 8.11 -2.38 -0.02 2.06 16 47 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 49 H 0.09 3.73 8.10 -2.38 -0.02 3.71 16 50 H 0.05 1.23 6.48 -2.39 -0.02 1.21 16 51 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 52 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.45 406.46 0.21 -73.24 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.91 Total: 18.06 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 7.78 Total: 23.42 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -10.43 Total: -130.00 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.07 Total: -29.48 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -73.45 0.21 -73.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278224317.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.567 kcal (2) G-P(sol) polarization free energy of solvation -73.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds