Wall clock time and date at job start Wed Apr 1 2020 05:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46781 * 2 1 4 4 C 1.53001 * 109.46781 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46973 * 183.69728 * 4 3 2 6 6 C 1.46970 * 110.99512 * 303.30427 * 5 4 3 7 7 C 1.53306 * 109.75791 * 195.14857 * 6 5 4 8 8 N 1.46634 * 108.27100 * 310.32404 * 7 6 5 9 9 C 1.34592 * 128.39164 * 196.36766 * 8 7 6 10 10 C 1.36654 * 106.73927 * 179.57055 * 9 8 7 11 11 C 1.47327 * 126.20128 * 180.02562 * 10 9 8 12 12 O 1.21616 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00009 * 180.02562 * 11 10 9 14 14 C 1.47070 * 136.05636 * 359.63408 * 13 11 10 15 15 C 1.53240 * 88.08061 * 207.20054 * 14 13 11 16 16 C 1.50700 * 114.32614 * 220.46780 * 15 14 13 17 17 H 1.07997 * 119.99722 * 93.75717 * 16 15 14 18 18 C 1.37874 * 120.00048 * 273.76267 * 16 15 14 19 19 N 1.31516 * 120.00194 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00143 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47097 * 90.00139 * 20 18 16 22 22 H 1.48497 * 109.47185 * 210.00212 * 20 18 16 23 23 H 1.48494 * 109.47148 * 330.00130 * 20 18 16 24 24 C 1.47063 * 136.06015 * 180.02562 * 13 11 10 25 25 N 1.35957 * 107.59831 * 0.07813 * 10 9 8 26 26 C 1.29587 * 108.84067 * 0.04126 * 25 10 9 27 27 C 1.47308 * 111.00404 * 67.50205 * 5 4 3 28 28 H 1.09009 * 109.78135 * 305.26458 * 27 5 4 29 29 C 1.53002 * 109.74325 * 65.94832 * 27 5 4 30 30 H 1.09005 * 109.47021 * 60.00497 * 1 2 3 31 31 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47549 * 299.99998 * 1 2 3 33 33 H 1.08997 * 109.47549 * 240.00002 * 2 1 3 34 34 H 1.09005 * 109.47021 * 119.99503 * 2 1 3 35 35 H 1.08997 * 109.47077 * 59.99713 * 3 2 1 36 36 H 1.09000 * 109.47066 * 299.99099 * 3 2 1 37 37 H 1.09004 * 109.47560 * 63.69189 * 4 3 2 38 38 H 1.08999 * 109.47146 * 303.69082 * 4 3 2 39 39 H 1.08999 * 109.43716 * 315.30146 * 6 5 4 40 40 H 1.09002 * 109.43113 * 75.21517 * 6 5 4 41 41 H 1.09006 * 109.73726 * 190.59799 * 7 6 5 42 42 H 1.09000 * 109.63870 * 69.99590 * 7 6 5 43 43 H 1.07999 * 126.63569 * 359.57744 * 9 8 7 44 44 H 1.08998 * 113.46729 * 321.93225 * 14 13 11 45 45 H 1.09003 * 113.46498 * 92.37647 * 14 13 11 46 46 H 1.08999 * 114.19595 * 87.72817 * 15 14 13 47 47 H 0.96990 * 120.00522 * 180.02562 * 19 18 16 48 48 H 1.09003 * 113.46681 * 267.63234 * 24 13 11 49 49 H 1.09004 * 113.46739 * 38.00554 * 24 13 11 50 50 H 1.09001 * 109.47122 * 178.61083 * 29 27 5 51 51 H 1.08998 * 109.47412 * 298.62107 * 29 27 5 52 52 H 1.09000 * 109.46578 * 58.61545 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8247 0.0887 6 6 3.5244 3.6449 -1.0072 7 6 4.3245 4.9479 -1.1179 8 7 4.4127 5.5480 0.2171 9 6 4.7477 6.8094 0.5460 10 6 4.6786 6.8925 1.9082 11 6 4.9612 8.0874 2.7225 12 8 5.2912 9.1264 2.1836 13 7 4.8539 8.0289 4.0648 14 6 4.4905 7.0034 5.0544 15 6 4.0251 8.1338 5.9785 16 6 4.3853 7.9380 7.4287 17 1 5.2945 8.3680 7.8220 18 6 3.5540 7.2099 8.2532 19 7 3.8685 7.0386 9.5187 20 14 1.9810 6.4667 7.5729 21 1 2.2597 5.1007 7.0616 22 1 0.9618 6.3935 8.6504 23 1 1.4710 7.3151 6.4660 24 6 5.0421 8.9643 5.1839 25 7 4.3030 5.6725 2.3760 26 6 4.1458 4.8694 1.3712 27 6 3.7401 3.4144 1.4002 28 1 2.6696 3.3343 1.5897 29 6 4.5152 2.6834 2.4983 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.9330 0.9873 -0.9221 38 1 3.9337 0.8724 0.8542 39 1 3.5988 3.0922 -1.9437 40 1 2.4790 3.8801 -0.8069 41 1 3.8183 5.6341 -1.7969 42 1 5.3257 4.7323 -1.4911 43 1 5.0187 7.6027 -0.1350 44 1 3.6807 6.3516 4.7266 45 1 5.3467 6.4510 5.4414 46 1 2.9883 8.4349 5.8289 47 1 3.2840 6.5261 10.0986 48 1 6.0469 8.9398 5.6058 49 1 4.7013 9.9764 4.9657 50 1 4.2945 3.1390 3.4636 51 1 4.2192 1.6345 2.5152 52 1 5.5842 2.7560 2.2981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278224319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:26 Heat of formation + Delta-G solvation = 67.492661 kcal Electronic energy + Delta-G solvation = -31131.938668 eV Core-core repulsion = 27133.737252 eV Total energy + Delta-G solvation = -3998.201417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.47187 -39.46360 -38.92141 -36.96698 -35.40055 -34.53803 -32.53498 -31.85282 -30.43286 -29.61367 -28.49582 -27.67666 -25.53788 -24.90572 -24.78387 -23.45849 -22.27578 -22.08279 -21.35159 -19.87864 -18.95724 -18.46267 -17.39088 -17.02419 -16.54778 -16.25278 -15.92546 -15.67749 -15.31777 -15.13654 -14.73656 -14.70486 -14.44355 -13.95618 -13.84109 -13.50826 -13.22875 -13.21150 -13.02305 -12.93417 -12.69860 -12.44426 -12.18676 -12.06150 -11.86662 -11.82020 -11.71458 -11.61393 -11.53678 -11.42771 -11.32697 -10.88899 -10.81843 -10.60983 -10.14249 -9.87575 -9.77869 -9.68758 -9.30372 -9.04407 -8.90881 -8.55096 -8.41722 -7.80544 -6.10535 -4.12127 1.73782 2.45611 2.52102 3.18925 3.31545 3.38122 3.42894 3.61864 3.95418 3.99684 4.09598 4.31497 4.36655 4.41632 4.43372 4.57951 4.63351 4.72642 4.83908 4.86388 4.95332 5.03674 5.08617 5.12700 5.15657 5.20700 5.24093 5.31100 5.33912 5.49504 5.51317 5.59876 5.68030 5.69099 5.77957 5.85071 5.94697 6.01608 6.13830 6.15909 6.25526 6.38031 6.41644 6.44440 6.52128 6.63755 6.72297 6.75960 7.01267 7.33534 7.67812 7.91893 8.44752 8.52673 8.84048 8.92866 9.51106 11.01578 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003224 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.244384 B = 8683.656097 C =10893.802489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.163 4.163 4 C 0.054 3.946 5 N -0.535 5.535 6 C 0.038 3.962 7 C 0.109 3.891 8 N -0.454 5.454 9 C 0.032 3.968 10 C -0.047 4.047 11 C 0.619 3.381 12 O -0.569 6.569 13 N -0.628 5.628 14 C 0.103 3.897 15 C -0.019 4.019 16 C -0.506 4.506 17 H 0.080 0.920 18 C 0.077 3.923 19 N -0.896 5.896 20 Si 0.873 3.127 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.263 1.263 24 C 0.116 3.884 25 N -0.436 5.436 26 C 0.206 3.794 27 C 0.170 3.830 28 H 0.072 0.928 29 C -0.136 4.136 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.187 0.813 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.265 0.735 48 H 0.080 0.920 49 H 0.061 0.939 50 H 0.080 0.920 51 H 0.063 0.937 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.716 -15.353 -25.054 29.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.202 4.202 4 C -0.073 4.073 5 N -0.259 5.259 6 C -0.090 4.090 7 C -0.014 4.014 8 N -0.136 5.136 9 C -0.107 4.107 10 C -0.176 4.176 11 C 0.409 3.591 12 O -0.449 6.449 13 N -0.359 5.359 14 C -0.020 4.020 15 C -0.038 4.038 16 C -0.544 4.544 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.533 5.533 20 Si 0.700 3.300 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.188 1.188 24 C -0.006 4.006 25 N -0.155 5.155 26 C -0.058 4.058 27 C 0.060 3.940 28 H 0.090 0.910 29 C -0.194 4.194 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.069 0.931 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.204 0.796 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.079 0.921 50 H 0.099 0.901 51 H 0.082 0.918 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.166 -15.107 -24.711 29.135 hybrid contribution -1.538 -0.248 -1.182 1.956 sum -4.704 -15.355 -25.893 30.468 Atomic orbital electron populations 1.21783 0.95793 1.01719 1.01876 1.21429 0.96015 0.96092 1.02203 1.22349 0.97293 0.98039 1.02508 1.22347 0.92677 0.88540 1.03766 1.62337 1.59255 1.02693 1.01650 1.22413 0.96925 0.93246 0.96439 1.22142 1.02873 0.94490 0.81880 1.45234 1.50591 1.09447 1.08367 1.22307 1.04263 0.87216 0.96927 1.20689 1.12256 0.93547 0.91137 1.16366 0.77158 0.85465 0.80157 1.90727 1.51453 1.30937 1.71826 1.49629 1.65152 1.18211 1.02940 1.23650 0.99444 0.93810 0.85060 1.20918 0.95601 0.92325 0.94973 1.20769 1.09154 1.33851 0.90616 0.90229 1.24970 0.97646 0.95440 0.94499 1.69894 1.38143 1.40388 1.04888 0.86878 0.83685 0.80415 0.78986 1.19807 1.21423 1.18755 1.23131 1.00783 0.94092 0.82610 1.70379 1.15915 1.00479 1.28748 1.23301 1.06021 0.95813 0.80701 1.20158 0.98879 0.84805 0.90129 0.91048 1.21768 1.00869 0.99260 0.97481 0.92894 0.92657 0.92640 0.91923 0.91703 0.91491 0.91784 0.90007 0.89476 0.88109 0.93097 0.88646 0.88800 0.79573 0.91785 0.90141 0.91782 0.92495 0.90177 0.92062 0.90126 0.91829 0.91443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.61 5.93 -26.73 -0.16 -0.77 16 3 C -0.16 -0.92 4.51 -26.73 -0.12 -1.04 16 4 C 0.05 0.31 5.16 -3.82 -0.02 0.29 16 5 N -0.54 -4.26 4.61 -227.22 -1.05 -5.31 16 6 C 0.04 0.24 4.53 -3.63 -0.02 0.22 16 7 C 0.11 0.78 7.22 -3.81 -0.03 0.76 16 8 N -0.45 -5.54 3.12 -113.40 -0.35 -5.89 16 9 C 0.03 0.46 11.36 -16.91 -0.19 0.27 16 10 C -0.05 -0.87 6.95 -82.92 -0.58 -1.45 16 11 C 0.62 13.34 8.06 -12.56 -0.10 13.24 16 12 O -0.57 -13.16 17.66 5.26 0.09 -13.07 16 13 N -0.63 -13.81 3.69 -186.74 -0.69 -14.50 16 14 C 0.10 2.29 6.87 -8.64 -0.06 2.23 16 15 C -0.02 -0.44 2.98 -91.41 -0.27 -0.71 16 16 C -0.51 -13.73 9.38 -34.44 -0.32 -14.05 16 17 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 20 Si 0.87 21.08 27.42 -169.99 -4.66 16.42 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.26 -6.19 6.22 56.52 0.35 -5.84 16 24 C 0.12 2.51 8.19 -8.53 -0.07 2.44 16 25 N -0.44 -7.82 9.69 -6.97 -0.07 -7.89 16 26 C 0.21 2.92 7.09 -154.62 -1.10 1.82 16 27 C 0.17 1.83 2.51 -68.46 -0.17 1.65 16 28 H 0.07 0.76 6.28 -51.92 -0.33 0.43 16 29 C -0.14 -1.46 9.04 37.16 0.34 -1.13 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 36 H 0.06 0.34 6.92 -51.93 -0.36 -0.01 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.52 6.22 -51.93 -0.32 0.20 16 39 H 0.10 0.38 8.00 -51.93 -0.42 -0.03 16 40 H 0.05 0.35 7.19 -51.93 -0.37 -0.03 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.19 2.26 8.06 -52.49 -0.42 1.83 16 44 H 0.06 1.42 7.46 -51.93 -0.39 1.03 16 45 H 0.08 1.80 8.10 -51.93 -0.42 1.38 16 46 H 0.06 1.55 6.50 -51.93 -0.34 1.21 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 48 H 0.08 1.70 8.10 -51.93 -0.42 1.28 16 49 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 50 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.06 0.53 6.50 -51.93 -0.34 0.19 16 52 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -33.83 407.37 -11.13 -44.96 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.71 Total: -0.41 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.60 Total: 5.37 kcal Atomic # 7 Polarization: -58.02 SS G_CDS: -1.39 Total: -59.41 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.66 Total: 16.42 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.83 -11.13 -44.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278224319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.452 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds