Wall clock time and date at job start Wed Apr 1 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46781 * 2 1 4 4 C 1.53001 * 109.46781 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.46973 * 183.69728 * 4 3 2 6 6 C 1.46970 * 110.99512 * 303.30427 * 5 4 3 7 7 C 1.53306 * 109.75791 * 195.14857 * 6 5 4 8 8 N 1.46634 * 108.27100 * 310.32404 * 7 6 5 9 9 C 1.34592 * 128.39164 * 196.36766 * 8 7 6 10 10 C 1.36654 * 106.73927 * 179.57055 * 9 8 7 11 11 C 1.47327 * 126.20128 * 180.02562 * 10 9 8 12 12 O 1.21616 * 120.00041 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00009 * 180.02562 * 11 10 9 14 14 C 1.47070 * 136.05636 * 359.63408 * 13 11 10 15 15 C 1.53240 * 88.08061 * 207.20054 * 14 13 11 16 16 C 1.50700 * 114.32614 * 220.46780 * 15 14 13 17 17 H 1.07997 * 119.99722 * 93.75717 * 16 15 14 18 18 C 1.37874 * 120.00048 * 273.76267 * 16 15 14 19 19 N 1.31516 * 120.00194 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 120.00143 * 359.97438 * 18 16 15 21 21 H 1.48499 * 109.47097 * 90.00139 * 20 18 16 22 22 H 1.48497 * 109.47185 * 210.00212 * 20 18 16 23 23 H 1.48494 * 109.47148 * 330.00130 * 20 18 16 24 24 C 1.47063 * 136.06015 * 180.02562 * 13 11 10 25 25 N 1.35957 * 107.59831 * 0.07813 * 10 9 8 26 26 C 1.29587 * 108.84067 * 0.04126 * 25 10 9 27 27 C 1.47308 * 111.00404 * 67.50205 * 5 4 3 28 28 H 1.09009 * 109.78135 * 305.26458 * 27 5 4 29 29 C 1.53002 * 109.74325 * 65.94832 * 27 5 4 30 30 H 1.09005 * 109.47021 * 60.00497 * 1 2 3 31 31 H 1.08999 * 109.47000 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47549 * 299.99998 * 1 2 3 33 33 H 1.08997 * 109.47549 * 240.00002 * 2 1 3 34 34 H 1.09005 * 109.47021 * 119.99503 * 2 1 3 35 35 H 1.08997 * 109.47077 * 59.99713 * 3 2 1 36 36 H 1.09000 * 109.47066 * 299.99099 * 3 2 1 37 37 H 1.09004 * 109.47560 * 63.69189 * 4 3 2 38 38 H 1.08999 * 109.47146 * 303.69082 * 4 3 2 39 39 H 1.08999 * 109.43716 * 315.30146 * 6 5 4 40 40 H 1.09002 * 109.43113 * 75.21517 * 6 5 4 41 41 H 1.09006 * 109.73726 * 190.59799 * 7 6 5 42 42 H 1.09000 * 109.63870 * 69.99590 * 7 6 5 43 43 H 1.07999 * 126.63569 * 359.57744 * 9 8 7 44 44 H 1.08998 * 113.46729 * 321.93225 * 14 13 11 45 45 H 1.09003 * 113.46498 * 92.37647 * 14 13 11 46 46 H 1.08999 * 114.19595 * 87.72817 * 15 14 13 47 47 H 0.96990 * 120.00522 * 180.02562 * 19 18 16 48 48 H 1.09003 * 113.46681 * 267.63234 * 24 13 11 49 49 H 1.09004 * 113.46739 * 38.00554 * 24 13 11 50 50 H 1.09001 * 109.47122 * 178.61083 * 29 27 5 51 51 H 1.08998 * 109.47412 * 298.62107 * 29 27 5 52 52 H 1.09000 * 109.46578 * 58.61545 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8247 0.0887 6 6 3.5244 3.6449 -1.0072 7 6 4.3245 4.9479 -1.1179 8 7 4.4127 5.5480 0.2171 9 6 4.7477 6.8094 0.5460 10 6 4.6786 6.8925 1.9082 11 6 4.9612 8.0874 2.7225 12 8 5.2912 9.1264 2.1836 13 7 4.8539 8.0289 4.0648 14 6 4.4905 7.0034 5.0544 15 6 4.0251 8.1338 5.9785 16 6 4.3853 7.9380 7.4287 17 1 5.2945 8.3680 7.8220 18 6 3.5540 7.2099 8.2532 19 7 3.8685 7.0386 9.5187 20 14 1.9810 6.4667 7.5729 21 1 2.2597 5.1007 7.0616 22 1 0.9618 6.3935 8.6504 23 1 1.4710 7.3151 6.4660 24 6 5.0421 8.9643 5.1839 25 7 4.3030 5.6725 2.3760 26 6 4.1458 4.8694 1.3712 27 6 3.7401 3.4144 1.4002 28 1 2.6696 3.3343 1.5897 29 6 4.5152 2.6834 2.4983 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.9330 0.9873 -0.9221 38 1 3.9337 0.8724 0.8542 39 1 3.5988 3.0922 -1.9437 40 1 2.4790 3.8801 -0.8069 41 1 3.8183 5.6341 -1.7969 42 1 5.3257 4.7323 -1.4911 43 1 5.0187 7.6027 -0.1350 44 1 3.6807 6.3516 4.7266 45 1 5.3467 6.4510 5.4414 46 1 2.9883 8.4349 5.8289 47 1 3.2840 6.5261 10.0986 48 1 6.0469 8.9398 5.6058 49 1 4.7013 9.9764 4.9657 50 1 4.2945 3.1390 3.4636 51 1 4.2192 1.6345 2.5152 52 1 5.5842 2.7560 2.2981 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278224319.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:24 Heat of formation + Delta-G solvation = 45.687470 kcal Electronic energy + Delta-G solvation = -31132.884213 eV Core-core repulsion = 27133.737252 eV Total energy + Delta-G solvation = -3999.146961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.52603 -41.05458 -39.74541 -38.67520 -36.03432 -35.28340 -34.66067 -32.71419 -31.46060 -31.10972 -29.53336 -28.37849 -27.29044 -26.71521 -25.54666 -24.39025 -23.28877 -22.80499 -21.97491 -21.60727 -20.00959 -19.70080 -19.16344 -18.49709 -17.66415 -17.18982 -16.91097 -16.65711 -16.61263 -16.28648 -15.91067 -15.72679 -15.36625 -15.17946 -15.00538 -14.77027 -14.75374 -14.18510 -14.02170 -13.75304 -13.68518 -13.49930 -13.42794 -13.39058 -13.05519 -12.81402 -12.73085 -12.53669 -12.51317 -12.35852 -12.30813 -11.91087 -11.82801 -11.79570 -11.63377 -11.37412 -11.31555 -11.20194 -10.93013 -10.79498 -10.62787 -9.82418 -9.51358 -9.32198 -8.27975 -6.34323 0.51636 1.29752 1.39894 1.40773 1.50690 1.54286 2.04274 2.37430 2.45307 2.56435 3.02136 3.07535 3.44911 3.54922 3.73226 3.92807 3.95324 4.03017 4.06067 4.08391 4.16517 4.19816 4.25491 4.28856 4.35738 4.44883 4.50132 4.59050 4.62601 4.64965 4.66435 4.76611 4.79216 4.79992 4.83667 4.87787 4.92248 4.93269 4.97908 5.01708 5.13723 5.23722 5.30354 5.35073 5.36860 5.42623 5.47711 5.61630 5.79780 5.83951 6.05864 6.28996 6.70281 6.74929 6.81244 7.20209 7.32676 8.87562 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009880 B = 0.003224 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.244384 B = 8683.656097 C =10893.802489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.117 4.117 3 C -0.157 4.157 4 C 0.057 3.943 5 N -0.539 5.539 6 C 0.037 3.963 7 C 0.099 3.901 8 N -0.445 5.445 9 C 0.059 3.941 10 C -0.098 4.098 11 C 0.617 3.383 12 O -0.592 6.592 13 N -0.635 5.635 14 C 0.121 3.879 15 C -0.020 4.020 16 C -0.508 4.508 17 H 0.046 0.954 18 C 0.027 3.973 19 N -0.941 5.941 20 Si 0.933 3.067 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.253 1.253 24 C 0.118 3.882 25 N -0.477 5.477 26 C 0.206 3.794 27 C 0.173 3.827 28 H 0.073 0.927 29 C -0.130 4.130 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.135 0.865 40 H 0.048 0.952 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.212 0.788 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.269 0.731 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.053 0.947 51 H 0.088 0.912 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 -17.367 -29.030 34.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.196 4.196 4 C -0.070 4.070 5 N -0.263 5.263 6 C -0.090 4.090 7 C -0.021 4.021 8 N -0.125 5.125 9 C -0.083 4.083 10 C -0.226 4.226 11 C 0.409 3.591 12 O -0.475 6.475 13 N -0.366 5.366 14 C -0.002 4.002 15 C -0.040 4.040 16 C -0.546 4.546 17 H 0.065 0.935 18 C -0.172 4.172 19 N -0.580 5.580 20 Si 0.757 3.243 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.177 1.177 24 C -0.004 4.004 25 N -0.196 5.196 26 C -0.059 4.059 27 C 0.063 3.937 28 H 0.090 0.910 29 C -0.189 4.189 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.066 0.934 41 H 0.143 0.857 42 H 0.127 0.873 43 H 0.228 0.772 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.107 0.893 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.268 -17.142 -28.728 33.725 hybrid contribution -1.128 0.355 -0.045 1.183 sum -5.396 -16.787 -28.773 33.747 Atomic orbital electron populations 1.21799 0.96278 1.01825 1.01464 1.21417 0.95560 0.95873 1.02685 1.22278 0.97145 0.98167 1.01966 1.22412 0.92645 0.87249 1.04704 1.62359 1.59683 1.03683 1.00564 1.22574 0.96388 0.92926 0.97160 1.22658 1.04490 0.95374 0.79592 1.45565 1.48627 1.08430 1.09908 1.22595 1.01571 0.88444 0.95725 1.20436 1.16500 0.93211 0.92454 1.16839 0.76178 0.86316 0.79809 1.90688 1.52596 1.32159 1.72027 1.49618 1.65891 1.17700 1.03392 1.23294 0.99055 0.93174 0.84654 1.20794 0.96013 0.93951 0.93201 1.20892 1.07961 1.33250 0.92502 0.93530 1.25736 1.00984 0.95914 0.94591 1.70016 1.39790 1.41801 1.06373 0.85916 0.79635 0.80088 0.78627 1.18663 1.20925 1.17666 1.23027 1.00273 0.94482 0.82606 1.70247 1.17503 1.00865 1.30953 1.23854 1.04600 0.96785 0.80703 1.20155 0.98649 0.82990 0.91869 0.90977 1.21691 1.00204 1.00611 0.96358 0.92616 0.92339 0.93744 0.90686 0.91967 0.93275 0.91074 0.87935 0.89779 0.84668 0.93357 0.85747 0.87294 0.77172 0.91563 0.90910 0.91744 0.92218 0.90163 0.91115 0.92743 0.89338 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.12 -0.89 5.93 30.60 0.18 -0.71 16 3 C -0.16 -1.31 4.51 30.60 0.14 -1.17 16 4 C 0.06 0.46 5.16 86.30 0.45 0.91 16 5 N -0.54 -6.81 4.61 -872.80 -4.03 -10.83 16 6 C 0.04 0.31 4.53 86.39 0.39 0.70 16 7 C 0.10 1.00 7.22 86.46 0.62 1.63 16 8 N -0.44 -9.65 3.12 -512.68 -1.60 -11.25 16 9 C 0.06 1.59 11.36 83.90 0.95 2.54 16 10 C -0.10 -3.60 6.95 40.53 0.28 -3.31 16 11 C 0.62 26.72 8.06 86.63 0.70 27.42 16 12 O -0.59 -27.44 17.66 -4.08 -0.07 -27.51 16 13 N -0.63 -28.28 3.69 -862.97 -3.19 -31.46 16 14 C 0.12 5.47 6.87 83.09 0.57 6.04 16 15 C -0.02 -0.96 2.98 -11.30 -0.03 -1.00 16 16 C -0.51 -28.43 9.38 25.60 0.24 -28.19 16 17 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 18 C 0.03 1.51 5.47 84.65 0.46 1.98 16 19 N -0.94 -57.31 13.96 21.45 0.30 -57.01 16 20 Si 0.93 43.67 27.42 68.60 1.88 45.55 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.25 -11.32 6.22 99.48 0.62 -10.70 16 24 C 0.12 5.24 8.19 83.17 0.68 5.92 16 25 N -0.48 -16.99 9.69 -175.97 -1.70 -18.69 16 26 C 0.21 5.57 7.09 138.03 0.98 6.55 16 27 C 0.17 3.43 2.51 44.21 0.11 3.54 16 28 H 0.07 1.43 6.28 -2.38 -0.01 1.42 16 29 C -0.13 -2.71 9.04 71.98 0.65 -2.06 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 35 H 0.05 0.60 6.36 -2.39 -0.02 0.59 16 36 H 0.07 0.51 6.92 -2.39 -0.02 0.49 16 37 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 0.76 6.22 -2.39 -0.01 0.74 16 39 H 0.14 0.25 8.00 -2.39 -0.02 0.24 16 40 H 0.05 0.46 7.19 -2.39 -0.02 0.44 16 41 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 42 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.21 4.50 8.06 -2.91 -0.02 4.47 16 44 H 0.07 2.95 7.46 -2.39 -0.02 2.94 16 45 H 0.07 3.36 8.10 -2.39 -0.02 3.34 16 46 H 0.06 3.10 6.50 -2.39 -0.02 3.09 16 47 H 0.27 15.29 8.31 -92.72 -0.77 14.52 16 48 H 0.08 3.51 8.10 -2.39 -0.02 3.49 16 49 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 50 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.09 1.34 6.50 -2.39 -0.02 1.32 16 52 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.99 407.37 0.50 -75.49 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 0.82 Total: 15.68 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 8.09 Total: 20.05 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -10.22 Total: -129.25 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.07 Total: -27.51 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -75.99 0.50 -75.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278224319.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.174 kcal (2) G-P(sol) polarization free energy of solvation -75.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds