Wall clock time and date at job start Wed Apr 1 2020 04:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47448 * 2 1 4 4 C 1.53001 * 109.47232 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47011 * 179.97438 * 4 3 2 6 6 C 1.47487 * 111.00148 * 293.95305 * 5 4 3 7 7 C 1.51865 * 107.02052 * 314.95250 * 6 5 4 8 8 C 1.34705 * 127.44670 * 115.12013 * 7 6 5 9 9 C 1.40185 * 107.59129 * 179.97438 * 8 7 6 10 10 N 1.31185 * 108.23942 * 0.02562 * 9 8 7 11 11 N 1.34441 * 124.48662 * 295.13103 * 7 6 5 12 12 C 1.47696 * 124.30008 * 0.06547 * 11 7 6 13 13 C 1.53689 * 106.95970 * 64.43529 * 12 11 7 14 14 C 1.44797 * 110.99945 * 167.71111 * 5 4 3 15 15 H 1.09003 * 108.02397 * 173.48369 * 14 5 4 16 16 C 1.50702 * 108.02541 * 289.92541 * 14 5 4 17 17 O 1.21279 * 119.99890 * 0.02562 * 16 14 5 18 18 N 1.34778 * 119.99653 * 179.97438 * 16 14 5 19 19 C 1.47065 * 136.05971 * 359.63695 * 18 16 14 20 20 C 1.53759 * 87.88685 * 152.95848 * 19 18 16 21 21 C 1.50696 * 114.08527 * 139.78047 * 20 19 18 22 22 H 1.08004 * 120.00166 * 266.55990 * 21 20 19 23 23 C 1.37875 * 120.00249 * 86.56415 * 21 20 19 24 24 N 1.31512 * 120.00135 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99896 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46939 * 90.00263 * 25 23 21 27 27 H 1.48496 * 109.47171 * 210.00440 * 25 23 21 28 28 H 1.48500 * 109.47065 * 330.00785 * 25 23 21 29 29 C 1.47064 * 136.05326 * 180.02562 * 18 16 14 30 30 H 1.09000 * 109.47076 * 59.99919 * 1 2 3 31 31 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47165 * 300.00136 * 1 2 3 33 33 H 1.09001 * 109.47165 * 239.99864 * 2 1 3 34 34 H 1.09000 * 109.47076 * 120.00080 * 2 1 3 35 35 H 1.09004 * 109.47305 * 60.00260 * 3 2 1 36 36 H 1.09000 * 109.47047 * 300.00098 * 3 2 1 37 37 H 1.08994 * 109.47372 * 60.00463 * 4 3 2 38 38 H 1.09000 * 109.46986 * 299.99892 * 4 3 2 39 39 H 1.09004 * 109.94871 * 195.57519 * 6 5 4 40 40 H 1.09004 * 110.01784 * 74.37147 * 6 5 4 41 41 H 1.07999 * 126.20470 * 359.97438 * 8 7 6 42 42 H 1.08002 * 125.87750 * 179.75367 * 9 8 7 43 43 H 1.08996 * 109.95842 * 305.07320 * 12 11 7 44 44 H 1.09000 * 110.02503 * 183.83499 * 12 11 7 45 45 H 1.08997 * 109.18758 * 160.09848 * 13 12 11 46 46 H 1.09001 * 109.19042 * 40.83978 * 13 12 11 47 47 H 1.09002 * 113.46805 * 267.68926 * 19 18 16 48 48 H 1.08995 * 113.46625 * 38.13240 * 19 18 16 49 49 H 1.09000 * 114.57496 * 272.66623 * 20 19 18 50 50 H 0.97005 * 120.00154 * 179.97438 * 24 23 21 51 51 H 1.09006 * 113.47048 * 321.86663 * 29 18 16 52 52 H 1.09001 * 113.46763 * 92.31004 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.7084 3.5117 -1.2596 7 6 4.0276 2.5514 -2.3920 8 6 3.1607 1.9802 -3.2504 9 6 3.9005 1.1707 -4.1236 10 7 5.1667 1.2592 -3.7922 11 7 5.2641 2.1251 -2.7028 12 6 6.4893 2.5304 -1.9844 13 6 6.3681 1.9896 -0.5509 14 6 5.4781 2.8764 0.2858 15 1 5.8125 3.9061 0.1589 16 6 5.6744 2.5013 1.7322 17 8 4.7159 2.2275 2.4230 18 7 6.9151 2.4692 2.2576 19 6 8.2794 2.7169 1.7675 20 6 8.6669 3.0940 3.2069 21 6 10.0196 2.5848 3.6331 22 1 10.1030 1.6393 4.1485 23 6 11.1510 3.3258 3.3651 24 7 12.3316 2.8812 3.7366 25 14 11.0070 4.9608 2.4732 26 1 10.8290 6.0517 3.4650 27 1 12.2416 5.2050 1.6849 28 1 9.8359 4.9255 1.5608 29 6 7.5010 2.1642 3.5716 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9284 0.8891 39 1 4.2995 4.4214 -1.3659 40 1 2.6461 3.7559 -1.2675 41 1 2.0900 2.1205 -3.2635 42 1 3.4969 0.5732 -4.9277 43 1 6.5678 3.6174 -1.9665 44 1 7.3660 2.1024 -2.4706 45 1 7.3591 1.9476 -0.0989 46 1 5.9463 0.9850 -0.5815 47 1 8.7799 1.8193 1.4043 48 1 8.3444 3.5492 1.0668 49 1 8.5006 4.1407 3.4617 50 1 13.1276 3.4024 3.5478 51 1 6.9028 2.5256 4.4081 52 1 7.7964 1.1210 3.6835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278224990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:01 Heat of formation + Delta-G solvation = 95.334581 kcal Electronic energy + Delta-G solvation = -32303.520785 eV Core-core repulsion = 28306.526685 eV Total energy + Delta-G solvation = -3996.994100 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.00934 -40.13491 -38.46877 -36.78672 -35.52189 -33.89383 -32.73936 -31.97542 -30.39412 -29.35643 -28.91327 -27.05399 -25.74588 -25.24491 -24.63069 -23.65610 -21.66107 -21.39551 -20.85768 -19.89249 -19.48885 -18.48105 -17.40323 -17.22176 -16.80067 -16.14330 -15.97813 -15.35180 -15.04313 -14.91618 -14.62811 -14.47251 -14.25676 -13.92798 -13.88310 -13.48889 -13.44585 -13.12543 -13.03628 -12.72684 -12.60352 -12.45348 -12.42796 -12.03731 -12.02836 -11.86405 -11.66235 -11.46173 -11.23697 -11.08239 -10.93196 -10.84803 -10.78582 -10.75355 -10.51096 -10.17150 -9.86898 -9.45804 -9.41416 -9.17714 -8.75499 -8.70468 -8.50335 -8.11907 -6.28016 -4.31201 1.70907 2.28575 2.65920 2.91307 3.13507 3.16783 3.22391 3.25020 3.77198 4.23039 4.25659 4.30796 4.34616 4.57942 4.75843 4.81319 4.85486 4.89941 4.93970 5.02300 5.06510 5.09902 5.19938 5.23201 5.36667 5.40799 5.48239 5.53888 5.55912 5.61292 5.66150 5.70120 5.76564 5.80797 5.85966 5.93736 5.97189 5.99992 6.05294 6.12014 6.20212 6.25005 6.30375 6.32456 6.44123 6.50201 6.76870 6.82065 6.90949 7.05612 7.46734 7.59298 8.23198 8.31919 8.57558 8.75960 9.32548 10.83949 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.003222 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.926704 B = 8689.048127 C = 9958.748163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.107 4.107 4 C 0.054 3.946 5 N -0.504 5.504 6 C 0.118 3.882 7 C 0.054 3.946 8 C -0.262 4.262 9 C 0.038 3.962 10 N -0.294 5.294 11 N -0.364 5.364 12 C 0.134 3.866 13 C -0.175 4.175 14 C 0.073 3.927 15 H 0.101 0.899 16 C 0.538 3.462 17 O -0.535 6.535 18 N -0.647 5.647 19 C 0.080 3.920 20 C -0.004 4.004 21 C -0.514 4.514 22 H 0.080 0.920 23 C 0.077 3.923 24 N -0.891 5.891 25 Si 0.876 3.124 26 H -0.275 1.275 27 H -0.287 1.287 28 H -0.261 1.261 29 C 0.116 3.884 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.145 0.855 42 H 0.179 0.821 43 H 0.093 0.907 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.058 0.942 49 H 0.061 0.939 50 H 0.267 0.733 51 H 0.062 0.938 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -0.114 -13.817 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.145 4.145 4 C -0.073 4.073 5 N -0.225 5.225 6 C -0.011 4.011 7 C -0.075 4.075 8 C -0.292 4.292 9 C -0.148 4.148 10 N -0.116 5.116 11 N -0.148 5.148 12 C 0.013 3.987 13 C -0.215 4.215 14 C -0.040 4.040 15 H 0.119 0.881 16 C 0.325 3.675 17 O -0.412 6.412 18 N -0.382 5.382 19 C -0.043 4.043 20 C -0.024 4.024 21 C -0.552 4.552 22 H 0.098 0.902 23 C -0.127 4.127 24 N -0.527 5.527 25 Si 0.703 3.297 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.186 1.186 29 C -0.006 4.006 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.163 0.837 42 H 0.196 0.804 43 H 0.111 0.889 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.077 0.923 51 H 0.080 0.920 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.446 -0.310 -13.340 21.963 hybrid contribution -0.189 0.635 -1.120 1.301 sum -17.635 0.326 -14.460 22.807 Atomic orbital electron populations 1.21733 0.95844 1.01309 1.01699 1.21446 0.95765 0.96998 1.01800 1.21501 0.94156 0.96547 1.02317 1.22274 0.96065 0.87638 1.01347 1.61357 1.11488 1.18204 1.31425 1.21512 1.03512 0.94071 0.82047 1.22008 0.86091 1.00278 0.99173 1.21095 1.00275 1.06872 1.00979 1.23970 0.90629 0.99891 1.00266 1.77386 1.19973 1.12025 1.02184 1.48924 1.06099 1.35243 1.24508 1.22272 0.85224 1.00548 0.90648 1.22497 1.03264 1.01256 0.94470 1.20805 0.88513 1.01227 0.93431 0.88133 1.19814 0.81435 0.77877 0.88334 1.90650 1.39193 1.49664 1.61659 1.49972 1.04858 1.67289 1.16090 1.24008 0.78546 1.00024 1.01677 1.20787 0.94791 0.95978 0.90849 1.20770 0.87813 1.07808 1.38807 0.90227 1.25020 0.95172 0.97676 0.94822 1.69890 0.98247 1.38693 1.45858 0.86889 0.77947 0.84412 0.80448 1.20112 1.21253 1.18589 1.23094 0.92436 1.00542 0.84543 0.92888 0.93033 0.92720 0.92417 0.92113 0.91057 0.92187 0.94424 0.89617 0.89291 0.87204 0.83749 0.80354 0.88920 0.87377 0.87264 0.90045 0.89639 0.92313 0.92083 0.92301 0.91981 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.23 5.93 -26.74 -0.16 -1.39 16 3 C -0.11 -1.17 5.15 -26.73 -0.14 -1.31 16 4 C 0.05 0.69 3.26 -3.82 -0.01 0.68 16 5 N -0.50 -6.27 4.14 -231.16 -0.96 -7.22 16 6 C 0.12 1.15 5.50 -4.08 -0.02 1.13 16 7 C 0.05 0.58 3.76 -82.13 -0.31 0.28 16 8 C -0.26 -2.66 10.18 -40.10 -0.41 -3.07 16 9 C 0.04 0.41 12.04 -17.10 -0.21 0.20 16 10 N -0.29 -3.86 12.64 30.75 0.39 -3.47 16 11 N -0.36 -4.33 3.53 -55.81 -0.20 -4.53 16 12 C 0.13 1.39 6.81 -3.03 -0.02 1.37 16 13 C -0.17 -2.08 4.68 -27.40 -0.13 -2.21 16 14 C 0.07 0.96 1.86 -71.02 -0.13 0.83 16 15 H 0.10 1.21 7.56 -51.93 -0.39 0.82 16 16 C 0.54 9.17 6.96 -10.98 -0.08 9.10 16 17 O -0.53 -10.73 15.36 5.56 0.09 -10.64 16 18 N -0.65 -11.33 3.57 -185.05 -0.66 -11.99 16 19 C 0.08 1.40 5.20 -8.37 -0.04 1.35 16 20 C 0.00 -0.09 2.98 -91.11 -0.27 -0.36 16 21 C -0.51 -12.71 9.37 -34.44 -0.32 -13.04 16 22 H 0.08 2.16 8.06 -52.48 -0.42 1.73 16 23 C 0.08 1.98 5.47 -17.82 -0.10 1.88 16 24 N -0.89 -24.94 13.96 55.43 0.77 -24.17 16 25 Si 0.88 19.01 27.15 -169.99 -4.61 14.39 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.26 -5.13 5.72 56.52 0.32 -4.81 16 29 C 0.12 2.18 8.17 -8.50 -0.07 2.11 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 37 H 0.04 0.51 5.24 -51.93 -0.27 0.24 16 38 H 0.09 1.36 6.05 -51.93 -0.31 1.04 16 39 H 0.09 0.77 7.77 -51.93 -0.40 0.36 16 40 H 0.11 0.92 7.26 -51.93 -0.38 0.54 16 41 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 42 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 43 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 44 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.11 1.34 4.95 -51.93 -0.26 1.09 16 46 H 0.08 1.10 6.56 -51.93 -0.34 0.76 16 47 H 0.09 1.47 7.80 -51.93 -0.41 1.07 16 48 H 0.06 0.94 7.13 -51.93 -0.37 0.57 16 49 H 0.06 1.26 7.03 -51.93 -0.37 0.90 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -30.14 394.77 -9.80 -39.93 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.52 Total: 5.09 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.05 Total: -3.33 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.65 Total: -51.39 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.61 Total: 14.39 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.14 -9.80 -39.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278224990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.269 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds