Wall clock time and date at job start Wed Apr 1 2020 04:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47448 * 2 1 4 4 C 1.53001 * 109.47232 * 180.02562 * 3 2 1 5 5 N 1.46905 * 109.47011 * 179.97438 * 4 3 2 6 6 C 1.47487 * 111.00148 * 293.95305 * 5 4 3 7 7 C 1.51865 * 107.02052 * 314.95250 * 6 5 4 8 8 C 1.34705 * 127.44670 * 115.12013 * 7 6 5 9 9 C 1.40185 * 107.59129 * 179.97438 * 8 7 6 10 10 N 1.31185 * 108.23942 * 0.02562 * 9 8 7 11 11 N 1.34441 * 124.48662 * 295.13103 * 7 6 5 12 12 C 1.47696 * 124.30008 * 0.06547 * 11 7 6 13 13 C 1.53689 * 106.95970 * 64.43529 * 12 11 7 14 14 C 1.44797 * 110.99945 * 167.71111 * 5 4 3 15 15 H 1.09003 * 108.02397 * 173.48369 * 14 5 4 16 16 C 1.50702 * 108.02541 * 289.92541 * 14 5 4 17 17 O 1.21279 * 119.99890 * 0.02562 * 16 14 5 18 18 N 1.34778 * 119.99653 * 179.97438 * 16 14 5 19 19 C 1.47065 * 136.05971 * 359.63695 * 18 16 14 20 20 C 1.53759 * 87.88685 * 152.95848 * 19 18 16 21 21 C 1.50696 * 114.08527 * 139.78047 * 20 19 18 22 22 H 1.08004 * 120.00166 * 266.55990 * 21 20 19 23 23 C 1.37875 * 120.00249 * 86.56415 * 21 20 19 24 24 N 1.31512 * 120.00135 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 119.99896 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46939 * 90.00263 * 25 23 21 27 27 H 1.48496 * 109.47171 * 210.00440 * 25 23 21 28 28 H 1.48500 * 109.47065 * 330.00785 * 25 23 21 29 29 C 1.47064 * 136.05326 * 180.02562 * 18 16 14 30 30 H 1.09000 * 109.47076 * 59.99919 * 1 2 3 31 31 H 1.08999 * 109.47159 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47165 * 300.00136 * 1 2 3 33 33 H 1.09001 * 109.47165 * 239.99864 * 2 1 3 34 34 H 1.09000 * 109.47076 * 120.00080 * 2 1 3 35 35 H 1.09004 * 109.47305 * 60.00260 * 3 2 1 36 36 H 1.09000 * 109.47047 * 300.00098 * 3 2 1 37 37 H 1.08994 * 109.47372 * 60.00463 * 4 3 2 38 38 H 1.09000 * 109.46986 * 299.99892 * 4 3 2 39 39 H 1.09004 * 109.94871 * 195.57519 * 6 5 4 40 40 H 1.09004 * 110.01784 * 74.37147 * 6 5 4 41 41 H 1.07999 * 126.20470 * 359.97438 * 8 7 6 42 42 H 1.08002 * 125.87750 * 179.75367 * 9 8 7 43 43 H 1.08996 * 109.95842 * 305.07320 * 12 11 7 44 44 H 1.09000 * 110.02503 * 183.83499 * 12 11 7 45 45 H 1.08997 * 109.18758 * 160.09848 * 13 12 11 46 46 H 1.09001 * 109.19042 * 40.83978 * 13 12 11 47 47 H 1.09002 * 113.46805 * 267.68926 * 19 18 16 48 48 H 1.08995 * 113.46625 * 38.13240 * 19 18 16 49 49 H 1.09000 * 114.57496 * 272.66623 * 20 19 18 50 50 H 0.97005 * 120.00154 * 179.97438 * 24 23 21 51 51 H 1.09006 * 113.47048 * 321.86663 * 29 18 16 52 52 H 1.09001 * 113.46763 * 92.31004 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 -0.0013 6 6 3.7084 3.5117 -1.2596 7 6 4.0276 2.5514 -2.3920 8 6 3.1607 1.9802 -3.2504 9 6 3.9005 1.1707 -4.1236 10 7 5.1667 1.2592 -3.7922 11 7 5.2641 2.1251 -2.7028 12 6 6.4893 2.5304 -1.9844 13 6 6.3681 1.9896 -0.5509 14 6 5.4781 2.8764 0.2858 15 1 5.8125 3.9061 0.1589 16 6 5.6744 2.5013 1.7322 17 8 4.7159 2.2275 2.4230 18 7 6.9151 2.4692 2.2576 19 6 8.2794 2.7169 1.7675 20 6 8.6669 3.0940 3.2069 21 6 10.0196 2.5848 3.6331 22 1 10.1030 1.6393 4.1485 23 6 11.1510 3.3258 3.3651 24 7 12.3316 2.8812 3.7366 25 14 11.0070 4.9608 2.4732 26 1 10.8290 6.0517 3.4650 27 1 12.2416 5.2050 1.6849 28 1 9.8359 4.9255 1.5608 29 6 7.5010 2.1642 3.5716 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9284 0.8891 39 1 4.2995 4.4214 -1.3659 40 1 2.6461 3.7559 -1.2675 41 1 2.0900 2.1205 -3.2635 42 1 3.4969 0.5732 -4.9277 43 1 6.5678 3.6174 -1.9665 44 1 7.3660 2.1024 -2.4706 45 1 7.3591 1.9476 -0.0989 46 1 5.9463 0.9850 -0.5815 47 1 8.7799 1.8193 1.4043 48 1 8.3444 3.5492 1.0668 49 1 8.5006 4.1407 3.4617 50 1 13.1276 3.4024 3.5478 51 1 6.9028 2.5256 4.4081 52 1 7.7964 1.1210 3.6835 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278224990.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:59 Heat of formation + Delta-G solvation = 75.976115 kcal Electronic energy + Delta-G solvation = -32304.360231 eV Core-core repulsion = 28306.526685 eV Total energy + Delta-G solvation = -3997.833546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.86097 -41.41905 -39.68774 -38.10725 -36.40301 -34.77525 -34.58120 -32.95618 -31.50087 -30.62863 -29.75161 -28.14067 -26.99171 -26.78245 -25.73449 -24.55710 -22.75629 -22.21055 -21.85464 -21.20565 -20.37560 -19.80782 -19.07947 -18.38151 -17.85544 -17.27364 -17.07936 -16.57693 -16.26228 -15.98225 -15.81367 -15.43722 -15.31322 -15.05758 -14.92458 -14.74887 -14.59068 -14.25558 -13.99888 -13.85241 -13.69494 -13.55763 -13.38183 -13.25499 -13.16982 -12.92311 -12.77750 -12.56803 -12.46302 -12.42335 -12.11310 -11.94555 -11.79893 -11.69835 -11.61258 -11.53851 -11.39395 -11.19320 -10.73199 -10.56351 -10.24772 -9.61469 -9.54594 -9.43485 -8.25480 -6.33815 0.90979 1.44068 1.46758 1.52355 1.56905 1.58032 1.82815 1.96215 2.41230 2.79858 3.06203 3.22608 3.43124 3.52450 3.67811 3.85898 3.92288 3.97785 4.02569 4.08983 4.15874 4.22674 4.28152 4.31235 4.37584 4.39258 4.48501 4.55276 4.59775 4.63780 4.64553 4.71790 4.74895 4.79321 4.81513 4.82572 4.86783 4.91769 4.96576 5.00106 5.11589 5.21651 5.27844 5.39217 5.40719 5.47000 5.61772 5.76074 5.87474 5.91903 6.05701 6.29934 6.72862 6.79965 6.88412 7.18780 7.34071 8.90071 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014110 B = 0.003222 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.926704 B = 8689.048127 C = 9958.748163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.099 4.099 4 C 0.066 3.934 5 N -0.514 5.514 6 C 0.120 3.880 7 C 0.049 3.951 8 C -0.263 4.263 9 C 0.034 3.966 10 N -0.333 5.333 11 N -0.373 5.373 12 C 0.134 3.866 13 C -0.163 4.163 14 C 0.083 3.917 15 H 0.124 0.876 16 C 0.533 3.467 17 O -0.568 6.568 18 N -0.645 5.645 19 C 0.096 3.904 20 C -0.012 4.012 21 C -0.514 4.514 22 H 0.037 0.963 23 C 0.018 3.982 24 N -0.946 5.946 25 Si 0.941 3.059 26 H -0.277 1.277 27 H -0.291 1.291 28 H -0.220 1.220 29 C 0.114 3.886 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.166 0.834 42 H 0.203 0.797 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.106 0.894 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.267 0.733 51 H 0.061 0.939 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.295 2.134 -16.697 26.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.061 4.061 5 N -0.235 5.235 6 C -0.008 4.008 7 C -0.080 4.080 8 C -0.293 4.293 9 C -0.151 4.151 10 N -0.155 5.155 11 N -0.157 5.157 12 C 0.014 3.986 13 C -0.203 4.203 14 C -0.030 4.030 15 H 0.142 0.858 16 C 0.323 3.677 17 O -0.447 6.447 18 N -0.380 5.380 19 C -0.026 4.026 20 C -0.031 4.031 21 C -0.552 4.552 22 H 0.055 0.945 23 C -0.181 4.181 24 N -0.585 5.585 25 Si 0.764 3.236 26 H -0.203 1.203 27 H -0.217 1.217 28 H -0.142 1.142 29 C -0.009 4.009 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.183 0.817 42 H 0.219 0.781 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.124 0.876 46 H 0.077 0.923 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.746 1.930 -16.240 25.639 hybrid contribution 0.457 -0.200 -0.121 0.513 sum -19.290 1.731 -16.361 25.353 Atomic orbital electron populations 1.21704 0.94269 1.01965 1.02255 1.21424 0.97112 0.96359 1.00946 1.21443 0.92708 0.97028 1.02497 1.22066 0.97170 0.87785 0.99111 1.61338 1.10952 1.17865 1.33329 1.21685 1.05027 0.94021 0.80064 1.22244 0.85932 1.00406 0.99447 1.21406 1.01275 1.06186 1.00426 1.24470 0.90156 0.99738 1.00709 1.77344 1.21411 1.13314 1.03436 1.49027 1.06756 1.35402 1.24550 1.22356 0.85210 1.01952 0.89076 1.22354 1.02439 0.99923 0.95629 1.20792 0.89444 1.02444 0.90319 0.85794 1.20635 0.80412 0.76743 0.89873 1.90639 1.40114 1.50982 1.62986 1.49931 1.05342 1.67430 1.15259 1.23750 0.77989 1.01033 0.99819 1.20715 0.92624 0.96311 0.93493 1.20932 0.90215 1.06192 1.37838 0.94512 1.25925 0.94459 1.01836 0.95843 1.70055 0.99333 1.40786 1.48343 0.85847 0.79209 0.78832 0.79688 1.20282 1.21713 1.14222 1.22957 0.92265 0.99913 0.85726 0.91507 0.92398 0.92942 0.92370 0.93913 0.92443 0.90160 0.95075 0.93332 0.87349 0.85355 0.81654 0.78060 0.86380 0.86956 0.87555 0.92303 0.89634 0.89323 0.91344 0.92413 0.92035 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.91 71.98 0.71 -1.46 16 2 C -0.12 -2.32 5.93 30.59 0.18 -2.13 16 3 C -0.10 -2.02 5.15 30.59 0.16 -1.86 16 4 C 0.07 1.64 3.26 86.30 0.28 1.92 16 5 N -0.51 -11.58 4.14 -885.26 -3.66 -15.24 16 6 C 0.12 1.89 5.50 85.82 0.47 2.37 16 7 C 0.05 0.91 3.76 41.72 0.16 1.06 16 8 C -0.26 -4.49 10.18 21.93 0.22 -4.26 16 9 C 0.03 0.65 12.04 85.26 1.03 1.68 16 10 N -0.33 -8.12 12.64 -56.63 -0.72 -8.83 16 11 N -0.37 -7.96 3.53 -330.50 -1.17 -9.12 16 12 C 0.13 2.40 6.81 86.38 0.59 2.99 16 13 C -0.16 -3.56 4.68 30.16 0.14 -3.42 16 14 C 0.08 1.96 1.86 43.90 0.08 2.04 16 15 H 0.12 2.41 7.56 -2.39 -0.02 2.39 16 16 C 0.53 17.55 6.96 87.66 0.61 18.16 16 17 O -0.57 -22.75 15.36 -3.03 -0.05 -22.79 16 18 N -0.64 -21.75 3.57 -857.75 -3.06 -24.81 16 19 C 0.10 3.13 5.20 83.27 0.43 3.56 16 20 C -0.01 -0.47 2.98 -11.11 -0.03 -0.51 16 21 C -0.51 -25.97 9.37 25.60 0.24 -25.73 16 22 H 0.04 2.11 8.06 -2.91 -0.02 2.09 16 23 C 0.02 0.92 5.47 84.65 0.46 1.38 16 24 N -0.95 -54.74 13.96 21.45 0.30 -54.44 16 25 Si 0.94 38.03 27.15 68.60 1.86 39.89 16 26 H -0.28 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.29 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.22 -7.32 5.72 99.48 0.57 -6.75 16 29 C 0.11 4.31 8.17 83.19 0.68 4.99 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.30 6.32 -2.39 -0.02 1.29 16 37 H 0.03 0.81 5.24 -2.39 -0.01 0.80 16 38 H 0.05 1.57 6.05 -2.39 -0.01 1.56 16 39 H 0.11 1.33 7.77 -2.39 -0.02 1.31 16 40 H 0.13 1.57 7.26 -2.38 -0.02 1.56 16 41 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 43 H 0.12 1.51 7.88 -2.39 -0.02 1.49 16 44 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.11 2.37 4.95 -2.39 -0.01 2.36 16 46 H 0.06 1.56 6.56 -2.39 -0.02 1.55 16 47 H 0.09 2.82 7.80 -2.39 -0.02 2.80 16 48 H 0.09 2.40 7.13 -2.39 -0.02 2.38 16 49 H 0.07 2.67 7.03 -2.39 -0.02 2.65 16 50 H 0.27 14.50 8.31 -92.70 -0.77 13.73 16 51 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 52 H 0.07 2.79 8.10 -2.39 -0.02 2.77 16 Total: -1.00 -68.60 394.77 0.69 -67.91 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.77 Total: 26.66 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.42 Total: 0.79 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -8.31 Total: -112.45 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.05 Total: -22.79 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.86 Total: 39.89 kcal Total: -68.60 0.69 -67.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278224990.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.886 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds