Wall clock time and date at job start Wed Apr 1 2020 04:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47484 * 2 1 4 4 C 1.52998 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46768 * 179.97438 * 4 3 2 6 6 C 1.44792 * 111.00405 * 299.80410 * 5 4 3 7 7 C 1.50942 * 116.60520 * 198.83306 * 6 5 4 8 8 C 1.53680 * 110.91655 * 287.83768 * 7 6 5 9 9 H 1.09002 * 109.95422 * 198.87690 * 8 7 6 10 10 C 1.50700 * 109.95368 * 320.15347 * 8 7 6 11 11 O 1.21277 * 119.99991 * 125.09671 * 10 8 7 12 12 N 1.34783 * 119.99693 * 305.09526 * 10 8 7 13 13 C 1.47063 * 136.05510 * 359.62942 * 12 10 8 14 14 C 1.53759 * 87.88590 * 152.96744 * 13 12 10 15 15 C 1.50701 * 114.09145 * 139.78044 * 14 13 12 16 16 H 1.08002 * 119.99721 * 266.56081 * 15 14 13 17 17 C 1.37878 * 119.99943 * 86.55919 * 15 14 13 18 18 N 1.31517 * 119.99737 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99666 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47205 * 90.00150 * 19 17 15 21 21 H 1.48499 * 109.46944 * 209.99815 * 19 17 15 22 22 H 1.48492 * 109.47361 * 329.99869 * 19 17 15 23 23 C 1.47059 * 136.05550 * 180.02562 * 12 10 8 24 24 N 1.47694 * 106.96392 * 79.51413 * 8 7 6 25 25 N 1.39502 * 127.45195 * 115.55940 * 24 8 7 26 26 C 1.31177 * 107.85978 * 180.02562 * 25 24 8 27 27 C 1.40185 * 108.23998 * 359.97438 * 26 25 24 28 28 C 1.34447 * 124.30630 * 295.56065 * 24 8 7 29 29 C 1.47502 * 110.99791 * 66.05029 * 5 4 3 30 30 H 1.08989 * 109.47557 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46933 * 300.00300 * 1 2 3 32 32 H 1.09006 * 109.46706 * 59.99612 * 1 2 3 33 33 H 1.08994 * 109.47335 * 240.00126 * 2 1 3 34 34 H 1.09004 * 109.47165 * 120.00127 * 2 1 3 35 35 H 1.09004 * 109.46799 * 59.99693 * 3 2 1 36 36 H 1.08994 * 109.47033 * 300.00092 * 3 2 1 37 37 H 1.08994 * 109.47536 * 300.00110 * 4 3 2 38 38 H 1.08996 * 109.46963 * 60.00856 * 4 3 2 39 39 H 1.08994 * 108.02501 * 320.64345 * 6 5 4 40 40 H 1.09001 * 108.02009 * 77.04926 * 6 5 4 41 41 H 1.09007 * 109.19334 * 167.46405 * 7 6 5 42 42 H 1.08998 * 109.14009 * 48.18473 * 7 6 5 43 43 H 1.09009 * 113.46812 * 267.69266 * 13 12 10 44 44 H 1.08998 * 113.46984 * 38.13747 * 13 12 10 45 45 H 1.09006 * 114.56866 * 272.66475 * 14 13 12 46 46 H 0.97003 * 119.99365 * 179.97438 * 18 17 15 47 47 H 1.09008 * 113.46878 * 321.86253 * 23 12 10 48 48 H 1.09003 * 113.47181 * 92.24613 * 23 12 10 49 49 H 1.08006 * 125.88110 * 179.97438 * 26 25 24 50 50 H 1.08003 * 126.20405 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.94670 * 273.88951 * 29 5 4 52 52 H 1.09001 * 109.94287 * 35.05066 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.5998 3.5400 -1.1735 7 6 4.3535 4.7951 -1.5408 8 6 4.0466 5.9291 -0.5500 9 1 4.3106 6.8902 -0.9913 10 6 2.5842 5.9127 -0.1865 11 8 2.2493 5.8546 0.9776 12 7 1.6484 5.9626 -1.1553 13 6 1.6478 6.0430 -2.6238 14 6 0.2816 5.3380 -2.6050 15 6 -0.7064 5.8843 -3.6033 16 1 -1.4047 6.6530 -3.3067 17 6 -0.7187 5.4029 -4.8952 18 7 0.1320 4.4673 -5.2565 19 14 -1.9428 6.0807 -6.1327 20 1 -1.3436 7.2434 -6.8359 21 1 -2.2828 5.0260 -7.1212 22 1 -3.1751 6.5116 -5.4250 23 6 0.1788 5.9676 -1.2087 24 7 4.8677 5.6843 0.6530 25 7 5.8980 6.4807 1.1533 26 6 6.3635 5.9034 2.2353 27 6 5.6381 4.7232 2.4497 28 6 4.7288 4.6190 1.4613 29 6 3.7084 3.5128 1.2580 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9331 0.9287 0.8908 38 1 3.9337 0.9285 -0.8892 39 1 3.6467 2.8577 -2.0222 40 1 2.5548 3.8077 -1.0174 41 1 4.0626 5.1072 -2.5439 42 1 5.4233 4.5867 -1.5267 43 1 1.6040 7.0643 -3.0026 44 1 2.4361 5.4530 -3.0912 45 1 0.3334 4.2492 -2.6018 46 1 0.1230 4.1284 -6.1653 47 1 -0.2846 5.3132 -0.4703 48 1 -0.2520 6.9689 -1.2137 49 1 7.1674 6.2736 2.8544 50 1 5.7825 4.0239 3.2600 51 1 2.7080 3.9390 1.1824 52 1 3.7506 2.8090 2.0892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278225293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:03 Heat of formation + Delta-G solvation = 91.743112 kcal Electronic energy + Delta-G solvation = -32903.797683 eV Core-core repulsion = 28906.647845 eV Total energy + Delta-G solvation = -3997.149838 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.61507 -39.81053 -38.30746 -37.31652 -35.12537 -33.82694 -32.81876 -31.43259 -30.22597 -29.45392 -28.14100 -26.66158 -25.48896 -25.14273 -24.97215 -23.10015 -21.74542 -21.18062 -20.89877 -19.99775 -19.44460 -18.19872 -17.18348 -16.84554 -16.33507 -15.96470 -15.55013 -15.27296 -15.09920 -14.95727 -14.71145 -14.30920 -14.20119 -13.98932 -13.76040 -13.30548 -12.95213 -12.81941 -12.73706 -12.55995 -12.53443 -12.20807 -12.03360 -11.83802 -11.62247 -11.55480 -11.41681 -11.30416 -11.14342 -11.07026 -10.98865 -10.88619 -10.83228 -10.51209 -10.44689 -10.40338 -9.85446 -9.41975 -9.24228 -8.99570 -8.71040 -8.33188 -8.15495 -8.09301 -6.31316 -4.37076 2.08919 2.45258 2.78469 3.04677 3.15715 3.24328 3.26351 3.39135 3.91511 4.23017 4.49753 4.61575 4.71779 4.83882 4.85070 4.89840 4.98657 5.08127 5.10112 5.15546 5.30250 5.37508 5.44913 5.54874 5.60283 5.65489 5.75924 5.79192 5.80346 5.83317 5.87310 5.91602 5.94389 5.95774 5.99710 6.01647 6.11630 6.19403 6.23530 6.25423 6.35334 6.36447 6.39844 6.43950 6.60514 6.87492 6.99184 7.10066 7.19195 7.37999 7.65984 7.98139 8.02101 8.18886 8.41000 8.66907 9.30759 10.78122 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.004058 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.462312 B = 6898.029159 C = 8706.671303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.162 4.162 4 C 0.065 3.935 5 N -0.543 5.543 6 C 0.045 3.955 7 C -0.124 4.124 8 C 0.148 3.852 9 H 0.127 0.873 10 C 0.527 3.473 11 O -0.546 6.546 12 N -0.635 5.635 13 C 0.089 3.911 14 C 0.041 3.959 15 C -0.520 4.520 16 H 0.064 0.936 17 C 0.071 3.929 18 N -0.884 5.884 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.102 3.898 24 N -0.346 5.346 25 N -0.302 5.302 26 C 0.042 3.958 27 C -0.280 4.280 28 C 0.133 3.867 29 C 0.102 3.898 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.265 0.735 47 H 0.057 0.943 48 H 0.076 0.924 49 H 0.179 0.821 50 H 0.142 0.858 51 H 0.084 0.916 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -5.826 8.359 12.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.201 4.201 4 C -0.063 4.063 5 N -0.266 5.266 6 C -0.083 4.083 7 C -0.163 4.163 8 C 0.042 3.958 9 H 0.144 0.856 10 C 0.314 3.686 11 O -0.425 6.425 12 N -0.369 5.369 13 C -0.033 4.033 14 C 0.022 3.978 15 C -0.558 4.558 16 H 0.082 0.918 17 C -0.133 4.133 18 N -0.520 5.520 19 Si 0.722 3.278 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.020 4.020 24 N -0.128 5.128 25 N -0.123 5.123 26 C -0.144 4.144 27 C -0.310 4.310 28 C 0.004 3.996 29 C -0.027 4.027 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.069 0.931 41 H 0.122 0.878 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.076 0.924 48 H 0.094 0.906 49 H 0.196 0.804 50 H 0.160 0.840 51 H 0.102 0.898 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.169 -4.935 8.016 12.464 hybrid contribution -1.373 -0.048 -0.151 1.382 sum 6.797 -4.983 7.864 11.527 Atomic orbital electron populations 1.21778 0.95785 1.01325 1.02255 1.21406 0.96087 0.96326 1.01642 1.22355 0.97166 0.97664 1.02938 1.22245 0.92781 0.88395 1.02863 1.60862 1.61702 1.02568 1.01456 1.21328 0.97979 0.95609 0.93354 1.21835 1.02978 0.92955 0.98526 1.21586 0.88058 1.02707 0.83415 0.85573 1.19781 0.86414 0.77465 0.84928 1.90671 1.81974 1.51565 1.18309 1.50021 1.08343 1.69529 1.08984 1.23943 1.02194 1.01431 0.75692 1.20350 0.91333 0.96737 0.89388 1.20882 1.18026 1.22250 0.94639 0.91805 1.24995 0.95458 0.94327 0.98481 1.69930 1.35844 1.27213 1.19013 0.86543 0.81539 0.78767 0.80936 1.20446 1.21072 1.19679 1.23422 0.77690 1.00895 0.99959 1.48270 1.26595 1.16805 1.21147 1.77300 1.03587 1.17748 1.13661 1.23858 1.00318 0.94764 0.95424 1.20925 1.02989 1.02784 1.04281 1.20856 0.97177 0.89981 0.91600 1.21446 0.96086 0.92610 0.92533 0.93001 0.92921 0.92257 0.91994 0.92331 0.92013 0.91091 0.90597 0.90427 0.90038 0.93124 0.87792 0.89460 0.90378 0.91556 0.91267 0.92535 0.92412 0.90604 0.80395 0.83979 0.89802 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.32 16 2 C -0.12 -1.22 5.93 -26.73 -0.16 -1.38 16 3 C -0.16 -1.96 4.65 -26.73 -0.12 -2.09 16 4 C 0.06 0.74 5.15 -3.82 -0.02 0.72 16 5 N -0.54 -7.43 4.53 -237.91 -1.08 -8.51 16 6 C 0.05 0.66 3.82 -5.99 -0.02 0.64 16 7 C -0.12 -1.77 4.94 -27.41 -0.14 -1.91 16 8 C 0.15 2.41 3.64 -68.07 -0.25 2.16 16 9 H 0.13 1.93 8.14 -51.93 -0.42 1.50 16 10 C 0.53 9.68 4.92 -10.98 -0.05 9.62 16 11 O -0.55 -11.53 14.22 5.56 0.08 -11.45 16 12 N -0.64 -11.53 2.81 -185.05 -0.52 -12.05 16 13 C 0.09 1.65 7.58 -8.37 -0.06 1.59 16 14 C 0.04 0.86 3.80 -91.11 -0.35 0.52 16 15 C -0.52 -12.25 8.82 -34.44 -0.30 -12.55 16 16 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -22.26 13.26 55.43 0.74 -21.53 16 19 Si 0.89 19.06 29.54 -169.99 -5.02 14.04 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 C 0.10 1.94 8.17 -8.50 -0.07 1.87 16 24 N -0.35 -5.94 3.27 -50.55 -0.17 -6.11 16 25 N -0.30 -5.19 12.64 30.75 0.39 -4.80 16 26 C 0.04 0.61 12.04 -17.10 -0.21 0.40 16 27 C -0.28 -4.11 10.77 -40.10 -0.43 -4.54 16 28 C 0.13 2.16 5.41 -82.13 -0.44 1.72 16 29 C 0.10 1.51 4.36 -4.07 -0.02 1.49 16 30 H 0.05 0.50 8.14 -51.94 -0.42 0.08 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.81 7.21 -51.93 -0.37 0.43 16 36 H 0.07 1.02 6.80 -51.93 -0.35 0.66 16 37 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 38 H 0.08 0.84 8.00 -51.93 -0.42 0.43 16 39 H 0.08 1.14 7.74 -51.93 -0.40 0.74 16 40 H 0.05 0.84 4.49 -51.93 -0.23 0.61 16 41 H 0.10 1.39 5.90 -51.93 -0.31 1.08 16 42 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 43 H 0.08 1.45 8.10 -51.92 -0.42 1.03 16 44 H 0.07 1.18 5.75 -51.93 -0.30 0.88 16 45 H 0.07 1.59 8.11 -51.93 -0.42 1.16 16 46 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 47 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 48 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 49 H 0.18 1.87 8.06 -52.48 -0.42 1.45 16 50 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 51 H 0.08 1.47 4.49 -51.93 -0.23 1.23 16 52 H 0.09 1.19 7.75 -51.93 -0.40 0.78 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -27.89 398.65 -10.41 -38.30 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.46 Total: 7.53 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.37 Total: -1.43 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.64 Total: -53.00 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.89 -10.41 -38.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278225293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.043 kcal (2) G-P(sol) polarization free energy of solvation -27.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds