Wall clock time and date at job start Wed Apr 1 2020 04:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47484 * 2 1 4 4 C 1.52998 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46768 * 179.97438 * 4 3 2 6 6 C 1.44792 * 111.00405 * 299.80410 * 5 4 3 7 7 C 1.50942 * 116.60520 * 198.83306 * 6 5 4 8 8 C 1.53680 * 110.91655 * 287.83768 * 7 6 5 9 9 H 1.09002 * 109.95422 * 198.87690 * 8 7 6 10 10 C 1.50700 * 109.95368 * 320.15347 * 8 7 6 11 11 O 1.21277 * 119.99991 * 125.09671 * 10 8 7 12 12 N 1.34783 * 119.99693 * 305.09526 * 10 8 7 13 13 C 1.47063 * 136.05510 * 359.62942 * 12 10 8 14 14 C 1.53759 * 87.88590 * 152.96744 * 13 12 10 15 15 C 1.50701 * 114.09145 * 139.78044 * 14 13 12 16 16 H 1.08002 * 119.99721 * 266.56081 * 15 14 13 17 17 C 1.37878 * 119.99943 * 86.55919 * 15 14 13 18 18 N 1.31517 * 119.99737 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99666 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47205 * 90.00150 * 19 17 15 21 21 H 1.48499 * 109.46944 * 209.99815 * 19 17 15 22 22 H 1.48492 * 109.47361 * 329.99869 * 19 17 15 23 23 C 1.47059 * 136.05550 * 180.02562 * 12 10 8 24 24 N 1.47694 * 106.96392 * 79.51413 * 8 7 6 25 25 N 1.39502 * 127.45195 * 115.55940 * 24 8 7 26 26 C 1.31177 * 107.85978 * 180.02562 * 25 24 8 27 27 C 1.40185 * 108.23998 * 359.97438 * 26 25 24 28 28 C 1.34447 * 124.30630 * 295.56065 * 24 8 7 29 29 C 1.47502 * 110.99791 * 66.05029 * 5 4 3 30 30 H 1.08989 * 109.47557 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46933 * 300.00300 * 1 2 3 32 32 H 1.09006 * 109.46706 * 59.99612 * 1 2 3 33 33 H 1.08994 * 109.47335 * 240.00126 * 2 1 3 34 34 H 1.09004 * 109.47165 * 120.00127 * 2 1 3 35 35 H 1.09004 * 109.46799 * 59.99693 * 3 2 1 36 36 H 1.08994 * 109.47033 * 300.00092 * 3 2 1 37 37 H 1.08994 * 109.47536 * 300.00110 * 4 3 2 38 38 H 1.08996 * 109.46963 * 60.00856 * 4 3 2 39 39 H 1.08994 * 108.02501 * 320.64345 * 6 5 4 40 40 H 1.09001 * 108.02009 * 77.04926 * 6 5 4 41 41 H 1.09007 * 109.19334 * 167.46405 * 7 6 5 42 42 H 1.08998 * 109.14009 * 48.18473 * 7 6 5 43 43 H 1.09009 * 113.46812 * 267.69266 * 13 12 10 44 44 H 1.08998 * 113.46984 * 38.13747 * 13 12 10 45 45 H 1.09006 * 114.56866 * 272.66475 * 14 13 12 46 46 H 0.97003 * 119.99365 * 179.97438 * 18 17 15 47 47 H 1.09008 * 113.46878 * 321.86253 * 23 12 10 48 48 H 1.09003 * 113.47181 * 92.24613 * 23 12 10 49 49 H 1.08006 * 125.88110 * 179.97438 * 26 25 24 50 50 H 1.08003 * 126.20405 * 179.97438 * 27 26 25 51 51 H 1.08998 * 109.94670 * 273.88951 * 29 5 4 52 52 H 1.09001 * 109.94287 * 35.05066 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8274 0.0000 6 6 3.5998 3.5400 -1.1735 7 6 4.3535 4.7951 -1.5408 8 6 4.0466 5.9291 -0.5500 9 1 4.3106 6.8902 -0.9913 10 6 2.5842 5.9127 -0.1865 11 8 2.2493 5.8546 0.9776 12 7 1.6484 5.9626 -1.1553 13 6 1.6478 6.0430 -2.6238 14 6 0.2816 5.3380 -2.6050 15 6 -0.7064 5.8843 -3.6033 16 1 -1.4047 6.6530 -3.3067 17 6 -0.7187 5.4029 -4.8952 18 7 0.1320 4.4673 -5.2565 19 14 -1.9428 6.0807 -6.1327 20 1 -1.3436 7.2434 -6.8359 21 1 -2.2828 5.0260 -7.1212 22 1 -3.1751 6.5116 -5.4250 23 6 0.1788 5.9676 -1.2087 24 7 4.8677 5.6843 0.6530 25 7 5.8980 6.4807 1.1533 26 6 6.3635 5.9034 2.2353 27 6 5.6381 4.7232 2.4497 28 6 4.7288 4.6190 1.4613 29 6 3.7084 3.5128 1.2580 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8899 37 1 3.9331 0.9287 0.8908 38 1 3.9337 0.9285 -0.8892 39 1 3.6467 2.8577 -2.0222 40 1 2.5548 3.8077 -1.0174 41 1 4.0626 5.1072 -2.5439 42 1 5.4233 4.5867 -1.5267 43 1 1.6040 7.0643 -3.0026 44 1 2.4361 5.4530 -3.0912 45 1 0.3334 4.2492 -2.6018 46 1 0.1230 4.1284 -6.1653 47 1 -0.2846 5.3132 -0.4703 48 1 -0.2520 6.9689 -1.2137 49 1 7.1674 6.2736 2.8544 50 1 5.7825 4.0239 3.2600 51 1 2.7080 3.9390 1.1824 52 1 3.7506 2.8090 2.0892 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278225293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:02 Heat of formation + Delta-G solvation = 76.430489 kcal Electronic energy + Delta-G solvation = -32904.461688 eV Core-core repulsion = 28906.647845 eV Total energy + Delta-G solvation = -3997.813843 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.84626 -41.23818 -39.49007 -38.81238 -36.26772 -34.93701 -34.61222 -32.61027 -31.40913 -30.95065 -29.22887 -28.01482 -26.96824 -26.65494 -26.27916 -24.24069 -22.95018 -22.38376 -22.02167 -21.30810 -20.71095 -19.60521 -18.81069 -18.25549 -17.82245 -17.21643 -16.69011 -16.56007 -16.41754 -16.38070 -16.04736 -15.73054 -15.32430 -15.11917 -15.01313 -14.43938 -14.21809 -14.19256 -14.00603 -13.95850 -13.59672 -13.50966 -13.36192 -13.18233 -13.11158 -12.92590 -12.73216 -12.64061 -12.50680 -12.31707 -12.20210 -12.15722 -12.01944 -11.83859 -11.60094 -11.47932 -11.43394 -11.07860 -10.90232 -10.52485 -10.24215 -9.64903 -9.50201 -9.28993 -8.17000 -6.26872 0.86704 1.20368 1.35819 1.46447 1.50746 1.57965 1.93785 1.97394 2.45733 2.80335 3.11403 3.17529 3.37157 3.56459 3.63625 3.85333 3.89767 4.01921 4.06971 4.16194 4.18601 4.23892 4.27378 4.29353 4.37165 4.43581 4.49122 4.60210 4.63984 4.67014 4.69944 4.74753 4.75728 4.77089 4.81997 4.86134 4.88579 4.94598 4.97303 5.06742 5.09190 5.22736 5.27793 5.31516 5.42804 5.59151 5.78869 5.81138 5.89236 6.00894 6.02248 6.22145 6.68742 6.80594 6.81446 6.90772 7.43005 8.92182 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010111 B = 0.004058 C = 0.003215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.462312 B = 6898.029159 C = 8706.671303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.153 4.153 4 C 0.066 3.934 5 N -0.540 5.540 6 C 0.051 3.949 7 C -0.114 4.114 8 C 0.150 3.850 9 H 0.134 0.866 10 C 0.530 3.470 11 O -0.574 6.574 12 N -0.631 5.631 13 C 0.105 3.895 14 C 0.035 3.965 15 C -0.530 4.530 16 H 0.063 0.937 17 C 0.030 3.970 18 N -0.910 5.910 19 Si 0.950 3.050 20 H -0.275 1.275 21 H -0.288 1.288 22 H -0.270 1.270 23 C 0.107 3.893 24 N -0.361 5.361 25 N -0.335 5.335 26 C 0.046 3.954 27 C -0.280 4.280 28 C 0.111 3.889 29 C 0.108 3.892 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.037 0.963 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.265 0.735 47 H 0.054 0.946 48 H 0.083 0.917 49 H 0.216 0.784 50 H 0.170 0.830 51 H 0.054 0.946 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -6.329 9.009 14.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.192 4.192 4 C -0.061 4.061 5 N -0.263 5.263 6 C -0.078 4.078 7 C -0.153 4.153 8 C 0.044 3.956 9 H 0.152 0.848 10 C 0.319 3.681 11 O -0.455 6.455 12 N -0.364 5.364 13 C -0.017 4.017 14 C 0.015 3.985 15 C -0.568 4.568 16 H 0.081 0.919 17 C -0.171 4.171 18 N -0.548 5.548 19 Si 0.776 3.224 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.195 1.195 23 C -0.015 4.015 24 N -0.143 5.143 25 N -0.156 5.156 26 C -0.139 4.139 27 C -0.310 4.310 28 C -0.018 4.018 29 C -0.020 4.020 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.045 0.955 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.101 0.899 49 H 0.233 0.767 50 H 0.187 0.813 51 H 0.072 0.928 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.474 -5.436 8.667 13.943 hybrid contribution -1.789 0.083 -0.248 1.808 sum 7.685 -5.353 8.419 12.594 Atomic orbital electron populations 1.21785 0.96435 1.01986 1.01025 1.21393 0.95484 0.95205 1.02899 1.22240 0.97854 0.98388 1.00755 1.22350 0.91978 0.87381 1.04351 1.60930 1.61388 1.03272 1.00708 1.21271 0.96621 0.95927 0.93982 1.21785 1.03052 0.92191 0.98270 1.21575 0.86313 1.03784 0.83936 0.84815 1.20139 0.87266 0.76405 0.84279 1.90653 1.82608 1.52788 1.19480 1.49899 1.07982 1.69565 1.08905 1.23694 1.00816 1.01330 0.75861 1.20176 0.92648 0.95440 0.90192 1.21160 1.18368 1.22060 0.95206 0.91888 1.25604 0.96851 0.94651 0.99978 1.70018 1.37181 1.28303 1.19259 0.85680 0.79748 0.78061 0.78917 1.20016 1.21341 1.19494 1.23299 0.78547 1.00937 0.98701 1.48367 1.27024 1.17296 1.21634 1.77263 1.04395 1.18796 1.15125 1.24540 1.00449 0.94242 0.94637 1.21354 1.02133 1.03218 1.04269 1.21274 0.98005 0.90241 0.92249 1.21358 0.94248 0.92775 0.93651 0.91365 0.93282 0.94377 0.91358 0.90298 0.93408 0.94093 0.88445 0.89493 0.89680 0.95539 0.87058 0.89020 0.89890 0.90757 0.93760 0.92636 0.92743 0.89877 0.76724 0.81275 0.92771 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.91 71.98 0.71 -2.67 16 2 C -0.11 -2.22 5.93 30.60 0.18 -2.04 16 3 C -0.15 -3.72 4.65 30.59 0.14 -3.58 16 4 C 0.07 1.43 5.15 86.30 0.44 1.87 16 5 N -0.54 -14.33 4.53 -906.60 -4.11 -18.44 16 6 C 0.05 1.47 3.82 86.03 0.33 1.80 16 7 C -0.11 -3.21 4.94 30.15 0.15 -3.06 16 8 C 0.15 4.83 3.64 44.25 0.16 4.99 16 9 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 10 C 0.53 19.72 4.92 87.66 0.43 20.15 16 11 O -0.57 -24.71 14.22 -3.02 -0.04 -24.75 16 12 N -0.63 -23.25 2.81 -857.77 -2.41 -25.66 16 13 C 0.10 3.90 7.58 83.27 0.63 4.53 16 14 C 0.03 1.50 3.80 -11.11 -0.04 1.45 16 15 C -0.53 -25.19 8.82 25.60 0.23 -24.96 16 16 H 0.06 2.95 7.81 -2.91 -0.02 2.92 16 17 C 0.03 1.48 5.46 84.65 0.46 1.94 16 18 N -0.91 -46.34 13.26 21.45 0.28 -46.06 16 19 Si 0.95 39.02 29.54 68.60 2.03 41.04 16 20 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.29 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 23 C 0.11 4.16 8.17 83.19 0.68 4.84 16 24 N -0.36 -12.12 3.27 -313.86 -1.03 -13.15 16 25 N -0.33 -11.07 12.64 -56.63 -0.72 -11.79 16 26 C 0.05 1.24 12.04 85.26 1.03 2.27 16 27 C -0.28 -7.57 10.77 21.93 0.24 -7.34 16 28 C 0.11 3.47 5.41 41.72 0.23 3.70 16 29 C 0.11 3.14 4.36 85.81 0.37 3.52 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.05 1.28 7.21 -2.38 -0.02 1.26 16 36 H 0.04 1.23 6.80 -2.39 -0.02 1.22 16 37 H 0.10 1.71 7.93 -2.39 -0.02 1.69 16 38 H 0.09 1.74 8.00 -2.39 -0.02 1.72 16 39 H 0.08 2.38 7.74 -2.39 -0.02 2.36 16 40 H 0.03 0.91 4.49 -2.39 -0.01 0.90 16 41 H 0.11 2.91 5.90 -2.38 -0.01 2.90 16 42 H 0.09 2.52 8.09 -2.39 -0.02 2.50 16 43 H 0.08 3.03 8.10 -2.38 -0.02 3.02 16 44 H 0.07 2.64 5.75 -2.39 -0.01 2.63 16 45 H 0.04 2.13 8.11 -2.38 -0.02 2.11 16 46 H 0.26 12.95 8.31 -92.71 -0.77 12.18 16 47 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 48 H 0.08 3.11 8.10 -2.39 -0.02 3.09 16 49 H 0.22 3.78 8.06 -2.91 -0.02 3.75 16 50 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 51 H 0.05 1.94 4.49 -2.39 -0.01 1.93 16 52 H 0.11 2.71 7.75 -2.39 -0.02 2.70 16 Total: -1.00 -60.15 398.65 1.29 -58.86 By element: Atomic # 1 Polarization: 31.61 SS G_CDS: 0.91 Total: 32.52 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 6.37 Total: 7.42 kcal Atomic # 7 Polarization: -107.12 SS G_CDS: -7.98 Total: -115.09 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.04 Total: -24.75 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Total: -60.15 1.29 -58.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278225293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.295 kcal (2) G-P(sol) polarization free energy of solvation -60.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds