Wall clock time and date at job start Wed Apr 1 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47699 * 2 1 4 4 C 1.52994 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47192 * 180.02562 * 4 3 2 6 6 C 1.44790 * 111.00293 * 167.71747 * 5 4 3 7 7 C 1.50929 * 116.62164 * 51.71504 * 6 5 4 8 8 C 1.53678 * 110.93658 * 72.13740 * 7 6 5 9 9 H 1.09002 * 110.02481 * 161.10125 * 8 7 6 10 10 C 1.50700 * 109.95663 * 39.87321 * 8 7 6 11 11 O 1.21283 * 119.99686 * 232.94987 * 10 8 7 12 12 N 1.34772 * 120.00241 * 52.94949 * 10 8 7 13 13 C 1.47065 * 136.05833 * 180.02562 * 12 10 8 14 14 C 1.53505 * 88.04976 * 207.05539 * 13 12 10 15 15 C 1.50697 * 114.20353 * 220.37326 * 14 13 12 16 16 H 1.07993 * 120.00344 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99484 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00244 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99957 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46661 * 60.00476 * 19 17 15 21 21 H 1.48499 * 109.47042 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47101 * 300.00450 * 19 17 15 23 23 C 1.47070 * 136.05732 * 359.94815 * 12 10 8 24 24 N 1.47685 * 106.96474 * 280.50562 * 8 7 6 25 25 N 1.39506 * 127.45618 * 244.43260 * 24 8 7 26 26 C 1.31185 * 107.85835 * 179.97438 * 25 24 8 27 27 C 1.40176 * 108.24036 * 0.02562 * 26 25 24 28 28 C 1.34440 * 124.30655 * 64.43251 * 24 8 7 29 29 C 1.47497 * 110.99900 * 293.95644 * 5 4 3 30 30 H 1.08997 * 109.46773 * 300.00086 * 1 2 3 31 31 H 1.09002 * 109.46720 * 59.99912 * 1 2 3 32 32 H 1.08994 * 109.47292 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46933 * 239.99765 * 2 1 3 34 34 H 1.09003 * 109.47039 * 120.00530 * 2 1 3 35 35 H 1.09004 * 109.46689 * 59.99575 * 3 2 1 36 36 H 1.09003 * 109.47308 * 300.00365 * 3 2 1 37 37 H 1.09004 * 109.47392 * 60.00267 * 4 3 2 38 38 H 1.08992 * 109.47209 * 300.00077 * 4 3 2 39 39 H 1.08996 * 108.02994 * 173.47948 * 6 5 4 40 40 H 1.08998 * 108.02303 * 289.88918 * 6 5 4 41 41 H 1.09003 * 109.14674 * 311.77667 * 7 6 5 42 42 H 1.08998 * 109.20139 * 192.53525 * 7 6 5 43 43 H 1.09003 * 113.47058 * 321.86665 * 13 12 10 44 44 H 1.09001 * 113.46970 * 92.24644 * 13 12 10 45 45 H 1.09001 * 114.20224 * 87.55036 * 14 13 12 46 46 H 0.96999 * 119.99997 * 180.02562 * 18 17 15 47 47 H 1.08993 * 113.46894 * 267.69517 * 23 12 10 48 48 H 1.09002 * 113.46412 * 38.08022 * 23 12 10 49 49 H 1.08003 * 125.87502 * 180.02562 * 26 25 24 50 50 H 1.08002 * 126.20729 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.94324 * 195.57780 * 29 5 4 52 52 H 1.09002 * 109.94372 * 74.33511 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0599 2.8273 0.0013 6 6 5.4780 2.8761 0.2894 7 6 6.3690 1.9907 -0.5473 8 6 6.4910 2.5317 -1.9805 9 1 7.3672 2.1039 -2.4676 10 6 6.5994 4.0346 -1.9554 11 8 5.8452 4.7082 -2.6251 12 7 7.5343 4.6301 -1.1889 13 6 7.9447 6.0129 -0.9019 14 6 9.3514 5.4774 -0.6009 15 6 10.0178 6.1240 0.5861 16 1 9.5026 6.8934 1.1418 17 6 11.2848 5.7323 0.9632 18 7 11.9121 4.7949 0.2868 19 14 12.1112 6.5342 2.4342 20 1 11.2886 6.3060 3.6492 21 1 13.4585 5.9410 2.6293 22 1 12.2436 7.9935 2.1929 23 6 8.5924 4.1832 -0.2704 24 7 5.2664 2.1266 -2.6997 25 7 5.1697 1.2617 -3.7900 26 6 3.9037 1.1734 -4.1225 27 6 3.1634 1.9826 -3.2496 28 6 4.0295 2.5526 -2.3897 29 6 3.7095 3.5124 -1.2571 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9338 0.9283 -0.8892 38 1 3.9330 0.9286 0.8908 39 1 5.8126 3.9057 0.1634 40 1 5.6190 2.6048 1.3356 41 1 5.9472 0.9860 -0.5782 42 1 7.3596 1.9487 -0.0945 43 1 7.9063 6.6669 -1.7731 44 1 7.4479 6.4413 -0.0313 45 1 9.9987 5.4055 -1.4750 46 1 12.8033 4.5192 0.5523 47 1 8.2688 4.1243 0.7688 48 1 9.1042 3.2805 -0.6041 49 1 3.5013 0.5795 -4.9298 50 1 2.0926 2.1231 -3.2634 51 1 4.3007 4.4220 -1.3622 52 1 2.6470 3.7555 -1.2647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278225296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:07 Heat of formation + Delta-G solvation = 92.533693 kcal Electronic energy + Delta-G solvation = -32576.840048 eV Core-core repulsion = 28579.724492 eV Total energy + Delta-G solvation = -3997.115556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.98001 -39.82481 -38.25710 -37.33262 -35.35009 -33.88671 -32.80418 -31.52784 -30.07035 -29.48235 -28.68490 -26.74786 -25.47626 -25.13433 -24.92800 -23.58460 -21.48763 -21.31059 -21.14009 -20.09192 -19.38979 -18.19524 -17.01787 -16.95988 -16.42101 -16.33009 -15.91554 -15.40090 -15.16893 -14.90839 -14.62510 -14.42013 -14.26635 -13.88031 -13.76200 -13.58050 -13.17233 -13.15284 -12.95713 -12.60302 -12.52955 -12.30559 -12.01193 -11.84799 -11.70595 -11.69054 -11.45972 -11.39167 -11.21276 -11.06230 -10.97751 -10.91396 -10.80905 -10.61269 -10.53791 -10.46327 -9.87534 -9.42507 -9.28880 -9.07350 -8.69592 -8.55147 -8.41378 -8.10591 -6.28812 -4.35315 1.91726 2.33137 2.77797 2.91533 3.18798 3.25117 3.25749 3.34024 3.84893 4.24398 4.37293 4.44827 4.58021 4.69442 4.77053 4.83820 4.86068 4.99930 5.00321 5.01455 5.17376 5.28802 5.34183 5.46131 5.49475 5.52609 5.60236 5.65428 5.69126 5.73857 5.78361 5.79338 5.83038 5.87293 5.95867 5.97860 5.99714 6.05455 6.14170 6.20527 6.21825 6.28249 6.33338 6.42282 6.60713 6.73835 6.87547 6.97778 7.07776 7.41448 7.68379 7.83793 8.04147 8.17261 8.38854 8.69031 9.32492 10.80675 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002932 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.769359 B = 9547.046396 C =10358.881744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.113 4.113 4 C 0.048 3.952 5 N -0.524 5.524 6 C 0.039 3.961 7 C -0.160 4.160 8 C 0.148 3.852 9 H 0.128 0.872 10 C 0.528 3.472 11 O -0.545 6.545 12 N -0.635 5.635 13 C 0.102 3.898 14 C 0.038 3.962 15 C -0.519 4.519 16 H 0.064 0.936 17 C 0.070 3.930 18 N -0.885 5.885 19 Si 0.896 3.104 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.094 3.906 24 N -0.347 5.347 25 N -0.296 5.296 26 C 0.041 3.959 27 C -0.274 4.274 28 C 0.086 3.914 29 C 0.101 3.899 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.105 0.895 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.266 0.734 47 H 0.080 0.920 48 H 0.061 0.939 49 H 0.179 0.821 50 H 0.143 0.857 51 H 0.109 0.891 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.826 -9.008 0.067 19.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.151 4.151 4 C -0.079 4.079 5 N -0.245 5.245 6 C -0.090 4.090 7 C -0.201 4.201 8 C 0.042 3.958 9 H 0.146 0.854 10 C 0.315 3.685 11 O -0.425 6.425 12 N -0.368 5.368 13 C -0.019 4.019 14 C 0.019 3.981 15 C -0.557 4.557 16 H 0.083 0.917 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.724 3.276 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.028 4.028 24 N -0.130 5.130 25 N -0.117 5.117 26 C -0.145 4.145 27 C -0.304 4.304 28 C -0.043 4.043 29 C -0.028 4.028 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.123 0.877 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.080 0.920 49 H 0.196 0.804 50 H 0.161 0.839 51 H 0.127 0.873 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.090 -8.961 -0.238 18.419 hybrid contribution 0.205 -0.022 0.102 0.230 sum -15.885 -8.984 -0.136 18.250 Atomic orbital electron populations 1.21741 0.95824 1.01352 1.01800 1.21460 0.95837 0.96899 1.01806 1.21567 0.94276 0.96571 1.02639 1.22232 0.95924 0.88760 1.00988 1.61806 1.13589 1.16481 1.32576 1.21569 0.86235 1.01179 0.99990 1.22352 1.03687 1.01234 0.92820 1.21565 0.87085 0.93790 0.93332 0.85392 1.19672 0.79853 0.88602 0.80386 1.90688 1.42518 1.65329 1.43920 1.49980 1.32202 1.12270 1.42360 1.23430 0.96622 0.82779 0.99073 1.20354 0.89333 0.90180 0.98269 1.20831 1.00616 1.21833 1.12435 0.91748 1.25028 0.96911 0.94677 0.96806 1.69931 1.13875 1.28907 1.39413 0.86584 0.78589 0.79796 0.82677 1.19973 1.21200 1.19997 1.23828 0.84772 1.02222 0.92012 1.48362 1.04985 1.35303 1.24336 1.77355 1.19892 1.12831 1.01608 1.23913 0.90613 0.99971 1.00000 1.21000 1.00137 1.07709 1.01522 1.21784 0.85591 0.98039 0.98896 1.21795 1.03384 0.95580 0.82029 0.92802 0.92729 0.93001 0.92157 0.92297 0.91375 0.91662 0.93774 0.91087 0.89842 0.89735 0.90051 0.87718 0.92236 0.90388 0.91274 0.92451 0.90154 0.92025 0.80361 0.83927 0.87279 0.88201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -1.02 5.93 -26.73 -0.16 -1.18 16 3 C -0.11 -1.07 5.14 -26.74 -0.14 -1.21 16 4 C 0.05 0.54 3.68 -3.83 -0.01 0.53 16 5 N -0.52 -6.61 4.80 -237.92 -1.14 -7.76 16 6 C 0.04 0.51 4.90 -6.00 -0.03 0.48 16 7 C -0.16 -2.09 4.56 -27.42 -0.13 -2.21 16 8 C 0.15 2.33 3.66 -68.08 -0.25 2.08 16 9 H 0.13 1.99 8.14 -51.93 -0.42 1.57 16 10 C 0.53 9.56 4.92 -10.99 -0.05 9.51 16 11 O -0.55 -11.42 14.40 5.55 0.08 -11.34 16 12 N -0.63 -11.44 2.72 -185.00 -0.50 -11.95 16 13 C 0.10 1.94 8.18 -8.50 -0.07 1.87 16 14 C 0.04 0.82 3.79 -91.18 -0.35 0.47 16 15 C -0.52 -12.33 8.82 -34.44 -0.30 -12.63 16 16 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.88 -22.93 13.26 55.43 0.74 -22.20 16 19 Si 0.90 19.19 29.54 -169.99 -5.02 14.17 16 20 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C 0.09 1.73 6.26 -8.43 -0.05 1.67 16 24 N -0.35 -5.61 3.12 -50.56 -0.16 -5.76 16 25 N -0.30 -4.87 12.64 30.75 0.39 -4.48 16 26 C 0.04 0.55 12.04 -17.10 -0.21 0.35 16 27 C -0.27 -3.65 10.19 -40.11 -0.41 -4.06 16 28 C 0.09 1.28 2.93 -82.13 -0.24 1.04 16 29 C 0.10 1.40 5.22 -4.07 -0.02 1.38 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.65 6.32 -51.93 -0.33 0.32 16 37 H 0.04 0.57 5.25 -51.93 -0.27 0.30 16 38 H 0.07 0.75 8.04 -51.93 -0.42 0.34 16 39 H 0.08 1.26 5.26 -51.93 -0.27 0.99 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.03 6.56 -51.93 -0.34 0.69 16 42 H 0.10 1.28 6.78 -51.93 -0.35 0.92 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 45 H 0.07 1.66 8.11 -51.93 -0.42 1.24 16 46 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 47 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 48 H 0.06 1.13 7.91 -51.93 -0.41 0.72 16 49 H 0.18 1.78 8.06 -52.48 -0.42 1.35 16 50 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 51 H 0.11 1.82 4.83 -51.93 -0.25 1.57 16 52 H 0.10 1.21 7.25 -51.93 -0.38 0.83 16 LS Contribution 395.43 15.07 5.96 5.96 Total: -1.00 -27.87 395.43 -10.29 -38.16 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.48 Total: 6.22 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -2.15 Total: -1.02 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.68 Total: -52.15 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -27.87 -10.29 -38.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278225296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.694 kcal (2) G-P(sol) polarization free energy of solvation -27.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds