Wall clock time and date at job start Wed Apr 1 2020 04:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47699 * 2 1 4 4 C 1.52994 * 109.47281 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47192 * 180.02562 * 4 3 2 6 6 C 1.44790 * 111.00293 * 167.71747 * 5 4 3 7 7 C 1.50929 * 116.62164 * 51.71504 * 6 5 4 8 8 C 1.53678 * 110.93658 * 72.13740 * 7 6 5 9 9 H 1.09002 * 110.02481 * 161.10125 * 8 7 6 10 10 C 1.50700 * 109.95663 * 39.87321 * 8 7 6 11 11 O 1.21283 * 119.99686 * 232.94987 * 10 8 7 12 12 N 1.34772 * 120.00241 * 52.94949 * 10 8 7 13 13 C 1.47065 * 136.05833 * 180.02562 * 12 10 8 14 14 C 1.53505 * 88.04976 * 207.05539 * 13 12 10 15 15 C 1.50697 * 114.20353 * 220.37326 * 14 13 12 16 16 H 1.07993 * 120.00344 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99484 * 179.97438 * 15 14 13 18 18 N 1.31520 * 120.00244 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99957 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46661 * 60.00476 * 19 17 15 21 21 H 1.48499 * 109.47042 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47101 * 300.00450 * 19 17 15 23 23 C 1.47070 * 136.05732 * 359.94815 * 12 10 8 24 24 N 1.47685 * 106.96474 * 280.50562 * 8 7 6 25 25 N 1.39506 * 127.45618 * 244.43260 * 24 8 7 26 26 C 1.31185 * 107.85835 * 179.97438 * 25 24 8 27 27 C 1.40176 * 108.24036 * 0.02562 * 26 25 24 28 28 C 1.34440 * 124.30655 * 64.43251 * 24 8 7 29 29 C 1.47497 * 110.99900 * 293.95644 * 5 4 3 30 30 H 1.08997 * 109.46773 * 300.00086 * 1 2 3 31 31 H 1.09002 * 109.46720 * 59.99912 * 1 2 3 32 32 H 1.08994 * 109.47292 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46933 * 239.99765 * 2 1 3 34 34 H 1.09003 * 109.47039 * 120.00530 * 2 1 3 35 35 H 1.09004 * 109.46689 * 59.99575 * 3 2 1 36 36 H 1.09003 * 109.47308 * 300.00365 * 3 2 1 37 37 H 1.09004 * 109.47392 * 60.00267 * 4 3 2 38 38 H 1.08992 * 109.47209 * 300.00077 * 4 3 2 39 39 H 1.08996 * 108.02994 * 173.47948 * 6 5 4 40 40 H 1.08998 * 108.02303 * 289.88918 * 6 5 4 41 41 H 1.09003 * 109.14674 * 311.77667 * 7 6 5 42 42 H 1.08998 * 109.20139 * 192.53525 * 7 6 5 43 43 H 1.09003 * 113.47058 * 321.86665 * 13 12 10 44 44 H 1.09001 * 113.46970 * 92.24644 * 13 12 10 45 45 H 1.09001 * 114.20224 * 87.55036 * 14 13 12 46 46 H 0.96999 * 119.99997 * 180.02562 * 18 17 15 47 47 H 1.08993 * 113.46894 * 267.69517 * 23 12 10 48 48 H 1.09002 * 113.46412 * 38.08022 * 23 12 10 49 49 H 1.08003 * 125.87502 * 180.02562 * 26 25 24 50 50 H 1.08002 * 126.20729 * 180.02562 * 27 26 25 51 51 H 1.08995 * 109.94324 * 195.57780 * 29 5 4 52 52 H 1.09002 * 109.94372 * 74.33511 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0599 2.8273 0.0013 6 6 5.4780 2.8761 0.2894 7 6 6.3690 1.9907 -0.5473 8 6 6.4910 2.5317 -1.9805 9 1 7.3672 2.1039 -2.4676 10 6 6.5994 4.0346 -1.9554 11 8 5.8452 4.7082 -2.6251 12 7 7.5343 4.6301 -1.1889 13 6 7.9447 6.0129 -0.9019 14 6 9.3514 5.4774 -0.6009 15 6 10.0178 6.1240 0.5861 16 1 9.5026 6.8934 1.1418 17 6 11.2848 5.7323 0.9632 18 7 11.9121 4.7949 0.2868 19 14 12.1112 6.5342 2.4342 20 1 11.2886 6.3060 3.6492 21 1 13.4585 5.9410 2.6293 22 1 12.2436 7.9935 2.1929 23 6 8.5924 4.1832 -0.2704 24 7 5.2664 2.1266 -2.6997 25 7 5.1697 1.2617 -3.7900 26 6 3.9037 1.1734 -4.1225 27 6 3.1634 1.9826 -3.2496 28 6 4.0295 2.5526 -2.3897 29 6 3.7095 3.5124 -1.2571 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9338 0.9283 -0.8892 38 1 3.9330 0.9286 0.8908 39 1 5.8126 3.9057 0.1634 40 1 5.6190 2.6048 1.3356 41 1 5.9472 0.9860 -0.5782 42 1 7.3596 1.9487 -0.0945 43 1 7.9063 6.6669 -1.7731 44 1 7.4479 6.4413 -0.0313 45 1 9.9987 5.4055 -1.4750 46 1 12.8033 4.5192 0.5523 47 1 8.2688 4.1243 0.7688 48 1 9.1042 3.2805 -0.6041 49 1 3.5013 0.5795 -4.9298 50 1 2.0926 2.1231 -3.2634 51 1 4.3007 4.4220 -1.3622 52 1 2.6470 3.7555 -1.2647 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278225296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:06 Heat of formation + Delta-G solvation = 76.770729 kcal Electronic energy + Delta-G solvation = -32577.523582 eV Core-core repulsion = 28579.724492 eV Total energy + Delta-G solvation = -3997.799089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.12392 -41.25331 -39.38206 -38.79312 -36.29116 -34.90731 -34.59805 -32.64418 -31.30595 -30.70733 -29.68709 -28.03836 -26.96610 -26.64793 -26.09662 -24.53988 -22.83348 -22.29931 -22.04411 -21.34038 -20.60810 -19.57138 -18.72532 -18.17595 -17.83087 -17.49366 -16.95760 -16.67668 -16.50726 -16.26181 -15.84061 -15.60031 -15.36066 -15.11365 -14.97521 -14.45158 -14.35633 -14.20753 -14.08308 -13.91465 -13.75253 -13.31123 -13.30436 -13.22478 -13.06913 -12.90659 -12.72953 -12.63017 -12.61661 -12.24421 -12.15670 -12.09097 -11.85570 -11.65188 -11.62495 -11.47001 -11.34169 -11.08125 -10.91995 -10.53287 -10.29179 -9.66897 -9.59456 -9.47191 -8.16351 -6.27057 0.76651 1.13708 1.38157 1.49941 1.52059 1.58224 1.87407 1.93201 2.46686 2.86763 3.04989 3.15239 3.31270 3.49108 3.55942 3.74852 3.94600 4.01760 4.10840 4.18263 4.23466 4.31482 4.32807 4.35460 4.36431 4.47766 4.49849 4.59060 4.65887 4.67641 4.71218 4.73820 4.74113 4.77115 4.85634 4.89798 4.93931 5.00107 5.01952 5.04635 5.14256 5.18554 5.33204 5.43743 5.52986 5.59742 5.70494 5.81479 5.87859 5.89463 6.06496 6.22262 6.68430 6.73882 6.81868 6.89941 7.43267 8.93117 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002932 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.769359 B = 9547.046396 C =10358.881744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.106 4.106 4 C 0.053 3.947 5 N -0.521 5.521 6 C 0.041 3.959 7 C -0.149 4.149 8 C 0.148 3.852 9 H 0.125 0.875 10 C 0.531 3.469 11 O -0.574 6.574 12 N -0.631 5.631 13 C 0.110 3.890 14 C 0.023 3.977 15 C -0.524 4.524 16 H 0.069 0.931 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.954 3.046 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.113 3.887 24 N -0.361 5.361 25 N -0.334 5.334 26 C 0.045 3.955 27 C -0.271 4.271 28 C 0.075 3.925 29 C 0.106 3.894 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.029 0.971 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.113 0.887 43 H 0.054 0.946 44 H 0.092 0.908 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.094 0.906 48 H 0.062 0.938 49 H 0.213 0.787 50 H 0.168 0.832 51 H 0.080 0.920 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.686 -9.883 1.215 21.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.074 4.074 5 N -0.242 5.242 6 C -0.088 4.088 7 C -0.189 4.189 8 C 0.042 3.958 9 H 0.143 0.857 10 C 0.320 3.680 11 O -0.456 6.456 12 N -0.363 5.363 13 C -0.012 4.012 14 C 0.004 3.996 15 C -0.562 4.562 16 H 0.087 0.913 17 C -0.177 4.177 18 N -0.556 5.556 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.200 1.200 23 C -0.009 4.009 24 N -0.144 5.144 25 N -0.155 5.155 26 C -0.140 4.140 27 C -0.301 4.301 28 C -0.054 4.054 29 C -0.023 4.023 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.072 0.928 44 H 0.110 0.890 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.081 0.919 49 H 0.230 0.770 50 H 0.186 0.814 51 H 0.098 0.902 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -17.966 -9.836 0.920 20.503 hybrid contribution 0.716 0.279 -0.345 0.843 sum -17.249 -9.557 0.575 19.729 Atomic orbital electron populations 1.21726 0.94915 1.01886 1.02018 1.21419 0.96578 0.95959 1.01640 1.21517 0.92940 0.97366 1.02559 1.22243 0.97008 0.87578 1.00557 1.61873 1.13271 1.17340 1.31720 1.21564 0.86550 0.99878 1.00856 1.22307 1.04261 1.01298 0.91034 1.21547 0.87448 0.91694 0.95066 0.85738 1.20056 0.78999 0.89633 0.79353 1.90668 1.43577 1.66345 1.44994 1.49863 1.32288 1.11758 1.42438 1.23297 0.95163 0.83297 0.99405 1.20228 0.90044 0.92670 0.96669 1.21138 1.00834 1.21626 1.12644 0.91309 1.25709 0.97639 0.95213 0.99101 1.70041 1.14113 1.30444 1.40981 0.85664 0.77473 0.78694 0.80169 1.18958 1.21616 1.19956 1.23547 0.84083 1.00538 0.92684 1.48416 1.05219 1.35975 1.24798 1.77319 1.21631 1.14096 1.02438 1.24544 0.89793 0.99467 1.00231 1.21359 1.01249 1.06843 1.00629 1.22078 0.85509 0.98312 0.99470 1.21712 1.03755 0.94395 0.82459 0.92502 0.92609 0.92347 0.92797 0.91999 0.91213 0.91904 0.95280 0.90313 0.91897 0.88078 0.89373 0.86883 0.92770 0.88980 0.94544 0.92695 0.88792 0.91924 0.77042 0.81408 0.90153 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.10 16 2 C -0.12 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.11 -1.79 5.14 30.59 0.16 -1.63 16 4 C 0.05 1.09 3.68 86.30 0.32 1.41 16 5 N -0.52 -12.42 4.80 -906.64 -4.36 -16.78 16 6 C 0.04 1.01 4.90 86.03 0.42 1.43 16 7 C -0.15 -3.72 4.56 30.15 0.14 -3.58 16 8 C 0.15 4.66 3.66 44.25 0.16 4.82 16 9 H 0.12 3.94 8.14 -2.39 -0.02 3.92 16 10 C 0.53 19.41 4.92 87.66 0.43 19.84 16 11 O -0.57 -24.45 14.40 -3.04 -0.04 -24.50 16 12 N -0.63 -22.86 2.72 -857.59 -2.33 -25.19 16 13 C 0.11 4.20 8.18 83.18 0.68 4.88 16 14 C 0.02 1.02 3.79 -11.16 -0.04 0.97 16 15 C -0.52 -24.86 8.82 25.60 0.23 -24.64 16 16 H 0.07 3.14 7.81 -2.91 -0.02 3.12 16 17 C 0.02 1.18 5.46 84.65 0.46 1.64 16 18 N -0.92 -48.15 13.26 21.45 0.28 -47.87 16 19 Si 0.95 39.08 29.54 68.60 2.03 41.10 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 23 C 0.11 4.16 6.26 83.23 0.52 4.68 16 24 N -0.36 -11.50 3.12 -313.88 -0.98 -12.47 16 25 N -0.33 -10.74 12.64 -56.63 -0.72 -11.46 16 26 C 0.04 1.14 12.04 85.26 1.03 2.17 16 27 C -0.27 -6.70 10.19 21.93 0.22 -6.48 16 28 C 0.08 2.15 2.93 41.72 0.12 2.27 16 29 C 0.11 2.84 5.22 85.82 0.45 3.29 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.06 1.09 6.32 -2.39 -0.02 1.08 16 37 H 0.03 0.70 5.25 -2.38 -0.01 0.69 16 38 H 0.08 1.49 8.04 -2.39 -0.02 1.47 16 39 H 0.06 1.85 5.26 -2.39 -0.01 1.84 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.09 2.12 6.56 -2.39 -0.02 2.10 16 42 H 0.11 2.61 6.78 -2.39 -0.02 2.59 16 43 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.09 3.26 8.10 -2.39 -0.02 3.24 16 45 H 0.04 1.83 8.11 -2.39 -0.02 1.81 16 46 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 47 H 0.09 3.22 8.10 -2.39 -0.02 3.20 16 48 H 0.06 2.29 7.91 -2.39 -0.02 2.27 16 49 H 0.21 3.62 8.06 -2.91 -0.02 3.60 16 50 H 0.17 3.16 8.06 -2.91 -0.02 3.14 16 51 H 0.08 2.68 4.83 -2.39 -0.01 2.67 16 52 H 0.12 2.66 7.25 -2.39 -0.02 2.64 16 Total: -1.00 -60.12 395.43 0.98 -59.14 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.91 Total: 29.59 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 6.19 Total: 8.44 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -8.10 Total: -113.77 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.50 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.10 kcal Total: -60.12 0.98 -59.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278225296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.909 kcal (2) G-P(sol) polarization free energy of solvation -60.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds