Wall clock time and date at job start Wed Apr 1 2020 04:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 6 6 N 1.46902 * 109.46901 * 180.02562 * 5 4 3 7 7 C 1.46967 * 110.99600 * 169.99576 * 6 5 4 8 8 C 1.53389 * 109.69398 * 52.97068 * 7 6 5 9 9 N 1.46637 * 108.22235 * 49.86174 * 8 7 6 10 10 C 1.34601 * 128.38954 * 163.58498 * 9 8 7 11 11 C 1.36657 * 106.73782 * 180.17925 * 10 9 8 12 12 C 1.47322 * 126.20120 * 179.91372 * 11 10 9 13 13 O 1.21626 * 119.99678 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00278 * 180.02562 * 12 11 10 15 15 C 1.47068 * 136.05394 * 359.62695 * 14 12 11 16 16 C 1.53241 * 88.08389 * 207.20327 * 15 14 12 17 17 C 1.50695 * 114.32843 * 220.47469 * 16 15 14 18 18 H 1.07998 * 120.00445 * 93.75877 * 17 16 15 19 19 C 1.37877 * 119.99795 * 273.76095 * 17 16 15 20 20 N 1.31517 * 119.99991 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00242 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47413 * 89.99963 * 21 19 17 23 23 H 1.48503 * 109.47450 * 210.00582 * 21 19 17 24 24 H 1.48502 * 109.46974 * 330.00021 * 21 19 17 25 25 C 1.47063 * 136.06184 * 180.02562 * 14 12 11 26 26 N 1.35966 * 107.60070 * 359.94804 * 11 10 9 27 27 C 1.29599 * 108.83572 * 359.95835 * 26 11 10 28 28 C 1.47314 * 110.99716 * 294.19803 * 6 5 4 29 29 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 30 30 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 33 33 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 35 35 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 36 36 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 37 37 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 38 38 H 1.09001 * 109.47109 * 299.99380 * 5 4 3 39 39 H 1.09002 * 109.47508 * 59.99571 * 5 4 3 40 40 H 1.09008 * 109.43158 * 173.03483 * 7 6 5 41 41 H 1.08995 * 109.43620 * 292.89775 * 7 6 5 42 42 H 1.08998 * 109.71806 * 169.54346 * 8 7 6 43 43 H 1.09002 * 109.71361 * 290.14089 * 8 7 6 44 44 H 1.07992 * 126.62923 * 0.15831 * 10 9 8 45 45 H 1.08993 * 113.47345 * 321.93921 * 15 14 12 46 46 H 1.09003 * 113.46370 * 92.38000 * 15 14 12 47 47 H 1.08997 * 114.19339 * 87.72580 * 16 15 14 48 48 H 0.96996 * 119.99892 * 179.97438 * 20 19 17 49 49 H 1.09003 * 113.46924 * 267.62916 * 25 14 12 50 50 H 1.08999 * 113.46407 * 38.06233 * 25 14 12 51 51 H 1.08997 * 109.73977 * 45.87428 * 28 6 5 52 52 H 1.09004 * 109.74006 * 166.58875 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0801 2.8848 0.0000 6 7 5.5491 2.8847 -0.0012 7 6 6.0756 4.2361 -0.2390 8 6 5.4497 5.2178 0.7596 9 7 5.5841 4.6510 2.1053 10 6 5.4588 5.2748 3.2915 11 6 5.6756 4.3321 4.2568 12 6 5.6431 4.5543 5.7128 13 8 5.4051 5.6625 6.1537 14 7 5.8771 3.5294 6.5563 15 6 6.1828 2.0971 6.4231 16 6 5.5348 1.8838 7.7952 17 6 6.2637 0.9064 8.6809 18 1 6.9941 1.2629 9.3921 19 6 5.9982 -0.4430 8.5832 20 7 6.6347 -1.2961 9.3557 21 14 4.7354 -1.0598 7.3526 22 1 5.4053 -1.3510 6.0597 23 1 4.1020 -2.2985 7.8719 24 1 3.6949 -0.0202 7.1479 25 6 5.9323 3.3498 8.0148 26 7 5.9275 3.1522 3.6299 27 6 5.8721 3.3389 2.3487 28 6 6.0780 2.3200 1.2524 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9284 0.8891 37 1 3.9329 0.9286 -0.8908 38 1 3.7164 3.3992 -0.8896 39 1 3.7171 3.3982 0.8904 40 1 7.1583 4.2309 -0.1125 41 1 5.8313 4.5469 -1.2548 42 1 5.9698 6.1744 0.7101 43 1 4.3951 5.3601 0.5236 44 1 5.2312 6.3186 3.4496 45 1 5.6433 1.6118 5.6098 46 1 7.2510 1.8807 6.4092 47 1 4.4588 1.7133 7.7595 48 1 6.4476 -2.2453 9.2873 49 1 6.9330 3.4708 8.4296 50 1 5.1801 3.9276 8.5520 51 1 5.5431 1.4024 1.4972 52 1 7.1415 2.1087 1.1411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278229349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:23 Heat of formation + Delta-G solvation = 41.194947 kcal Electronic energy + Delta-G solvation = -30973.937548 eV Core-core repulsion = 26974.595777 eV Total energy + Delta-G solvation = -3999.341771 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.63933 -41.09099 -39.50630 -38.65592 -36.67836 -35.03752 -34.66046 -32.43398 -31.91187 -30.83923 -30.09746 -27.88456 -27.22606 -26.73920 -25.82991 -23.90609 -23.69781 -22.57204 -21.90948 -21.65234 -19.99910 -19.78743 -19.16725 -18.44981 -17.55437 -17.39342 -16.99110 -16.80943 -16.69455 -16.24594 -16.05077 -15.85530 -15.35246 -15.14289 -14.93251 -14.84553 -14.62847 -14.45636 -14.22720 -13.94486 -13.89578 -13.58889 -13.41617 -13.38140 -13.08636 -12.82922 -12.75017 -12.61697 -12.55311 -12.35841 -11.89685 -11.84329 -11.79348 -11.66924 -11.53032 -11.42115 -11.35073 -11.23131 -10.95457 -10.82870 -10.64484 -9.82719 -9.69462 -9.44743 -8.29040 -6.35518 0.45577 1.26003 1.39088 1.40240 1.45410 1.49938 2.00501 2.36455 2.43141 2.70130 3.00737 3.02356 3.39771 3.60638 3.67333 3.81811 3.86864 3.98591 4.03435 4.12781 4.18218 4.23363 4.26276 4.30096 4.31671 4.41106 4.46876 4.58624 4.59388 4.60538 4.64636 4.68740 4.76947 4.81710 4.84450 4.86853 4.88697 4.89591 4.97248 4.99938 5.08849 5.21230 5.28911 5.34600 5.35183 5.41237 5.47601 5.60196 5.70694 5.84722 5.97555 6.27732 6.68999 6.70840 6.78301 7.16579 7.31550 8.86484 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007935 B = 0.003548 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3527.825081 B = 7890.585374 C =10285.663981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.115 4.115 5 C 0.051 3.949 6 N -0.521 5.521 7 C 0.041 3.959 8 C 0.058 3.942 9 N -0.448 5.448 10 C 0.058 3.942 11 C -0.097 4.097 12 C 0.615 3.385 13 O -0.593 6.593 14 N -0.634 5.634 15 C 0.121 3.879 16 C -0.020 4.020 17 C -0.509 4.509 18 H 0.047 0.953 19 C 0.028 3.972 20 N -0.940 5.940 21 Si 0.933 3.067 22 H -0.261 1.261 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.118 3.882 26 N -0.479 5.479 27 C 0.174 3.826 28 C 0.139 3.861 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.019 0.981 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.124 0.876 43 H 0.104 0.896 44 H 0.208 0.792 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.269 0.731 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.105 0.895 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 9.727 -30.902 33.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.153 4.153 5 C -0.076 4.076 6 N -0.242 5.242 7 C -0.087 4.087 8 C -0.064 4.064 9 N -0.130 5.130 10 C -0.084 4.084 11 C -0.225 4.225 12 C 0.407 3.593 13 O -0.476 6.476 14 N -0.365 5.365 15 C -0.002 4.002 16 C -0.039 4.039 17 C -0.547 4.547 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.579 5.579 21 Si 0.757 3.243 22 H -0.186 1.186 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.004 4.004 26 N -0.199 5.199 27 C -0.093 4.093 28 C 0.009 3.991 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.037 0.963 40 H 0.111 0.889 41 H 0.156 0.844 42 H 0.142 0.858 43 H 0.123 0.877 44 H 0.225 0.775 45 H 0.084 0.916 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.123 0.877 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.876 9.304 -30.911 33.005 hybrid contribution -0.634 0.736 0.909 1.330 sum -7.510 10.041 -30.002 32.517 Atomic orbital electron populations 1.21782 0.95662 1.01851 1.01813 1.21528 0.96114 0.96825 1.01936 1.21518 0.94831 0.96947 1.01866 1.21600 0.95257 0.95953 1.02508 1.22280 0.86080 0.97992 1.01251 1.62529 1.08762 1.22097 1.30806 1.22810 1.00881 0.84956 1.00005 1.23231 1.05085 1.00762 0.77308 1.45540 1.50821 1.08920 1.07677 1.22562 1.02364 0.99927 0.83546 1.20461 1.17069 0.91947 0.93000 1.16873 0.76069 0.82029 0.84366 1.90693 1.54347 1.23912 1.78606 1.49620 1.67263 1.10706 1.08949 1.23308 1.00374 0.77410 0.99127 1.20788 0.97013 0.92757 0.93372 1.20892 1.22637 0.91100 1.20098 0.93486 1.25723 0.97511 0.96912 0.96959 1.70017 1.43885 1.03259 1.40748 0.85929 0.80351 0.78153 0.79907 1.18610 1.20877 1.17765 1.23033 1.01327 0.96074 0.79952 1.70338 1.18834 1.25633 1.05059 1.25057 1.04287 0.86389 0.93531 1.21190 1.03484 0.93262 0.81168 0.93566 0.91828 0.92562 0.91039 0.93349 0.93699 0.90480 0.93454 0.89959 0.87806 0.96281 0.88933 0.84375 0.85786 0.87747 0.77508 0.91562 0.90797 0.91815 0.92191 0.90081 0.91166 0.87711 0.86626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.13 -1.77 5.93 30.59 0.18 -1.59 16 3 C -0.11 -1.49 5.21 30.59 0.16 -1.33 16 4 C -0.12 -1.53 5.17 30.59 0.16 -1.37 16 5 C 0.05 0.59 4.00 86.30 0.35 0.94 16 6 N -0.52 -6.04 4.96 -897.94 -4.46 -10.50 16 7 C 0.04 0.27 5.95 86.42 0.51 0.78 16 8 C 0.06 0.49 6.27 86.48 0.54 1.04 16 9 N -0.45 -9.01 2.85 -512.51 -1.46 -10.47 16 10 C 0.06 1.52 11.37 83.90 0.95 2.48 16 11 C -0.10 -3.50 6.95 40.52 0.28 -3.22 16 12 C 0.61 26.52 8.06 86.63 0.70 27.22 16 13 O -0.59 -27.43 17.66 -4.11 -0.07 -27.50 16 14 N -0.63 -28.13 3.69 -862.94 -3.19 -31.32 16 15 C 0.12 5.42 6.87 83.09 0.57 5.99 16 16 C -0.02 -0.95 2.98 -11.30 -0.03 -0.98 16 17 C -0.51 -28.46 9.38 25.60 0.24 -28.22 16 18 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 19 C 0.03 1.59 5.47 84.65 0.46 2.05 16 20 N -0.94 -57.19 13.96 21.45 0.30 -56.90 16 21 Si 0.93 43.67 27.42 68.60 1.88 45.55 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 H -0.25 -11.39 6.22 99.48 0.62 -10.77 16 25 C 0.12 5.22 8.19 83.17 0.68 5.90 16 26 N -0.48 -16.68 9.78 -175.96 -1.72 -18.40 16 27 C 0.17 4.38 6.98 138.03 0.96 5.35 16 28 C 0.14 2.49 6.07 85.60 0.52 3.01 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.05 0.83 6.30 -2.39 -0.02 0.81 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.70 8.08 -2.39 -0.02 0.68 16 39 H 0.02 0.31 6.23 -2.39 -0.01 0.29 16 40 H 0.09 0.65 8.07 -2.38 -0.02 0.63 16 41 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.10 0.66 7.20 -2.39 -0.02 0.65 16 44 H 0.21 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.07 2.94 7.46 -2.39 -0.02 2.93 16 46 H 0.07 3.39 8.10 -2.39 -0.02 3.37 16 47 H 0.06 3.07 6.50 -2.39 -0.02 3.06 16 48 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 49 H 0.08 3.53 8.10 -2.39 -0.02 3.51 16 50 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 51 H 0.10 2.05 5.99 -2.39 -0.01 2.04 16 52 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 Total: -1.00 -75.80 409.68 0.04 -75.76 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.81 Total: 17.05 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 7.95 Total: 16.73 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -10.53 Total: -127.58 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.07 Total: -27.50 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.88 Total: 45.55 kcal Total: -75.80 0.04 -75.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278229349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.951 kcal (2) G-P(sol) polarization free energy of solvation -75.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds