Wall clock time and date at job start Wed Apr 1 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46890 * 2 1 4 4 C 1.53000 * 109.46890 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47013 * 180.02562 * 4 3 2 6 6 N 1.46899 * 109.47224 * 179.97438 * 5 4 3 7 7 C 1.46987 * 111.00209 * 170.00065 * 6 5 4 8 8 C 1.53413 * 109.59961 * 53.42829 * 7 6 5 9 9 N 1.46493 * 108.25498 * 49.52269 * 8 7 6 10 10 C 1.37300 * 128.58729 * 163.68136 * 9 8 7 11 11 C 1.46766 * 126.93076 * 0.12829 * 10 9 8 12 12 O 1.21684 * 120.00318 * 354.45949 * 11 10 9 13 13 N 1.34776 * 119.99610 * 174.46275 * 11 10 9 14 14 C 1.47066 * 136.06223 * 4.06724 * 13 11 10 15 15 C 1.53233 * 88.08657 * 207.21020 * 14 13 11 16 16 C 1.50707 * 114.32525 * 220.47053 * 15 14 13 17 17 H 1.08005 * 119.99710 * 93.75462 * 16 15 14 18 18 C 1.37871 * 120.00369 * 273.76060 * 16 15 14 19 19 N 1.31520 * 119.99722 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00282 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47058 * 89.99676 * 20 18 16 22 22 H 1.48498 * 109.47207 * 209.99570 * 20 18 16 23 23 H 1.48491 * 109.47029 * 329.99796 * 20 18 16 24 24 C 1.47070 * 136.05627 * 184.44840 * 13 11 10 25 25 C 1.36913 * 106.13148 * 180.15402 * 10 9 8 26 26 N 1.33529 * 107.85682 * 359.95594 * 25 10 9 27 27 C 1.30350 * 109.67027 * 359.96654 * 26 25 10 28 28 C 1.47299 * 111.00001 * 294.17068 * 6 5 4 29 29 H 1.09001 * 109.47064 * 60.00126 * 1 2 3 30 30 H 1.08997 * 109.47390 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47283 * 300.00211 * 1 2 3 32 32 H 1.09003 * 109.47126 * 239.99977 * 2 1 3 33 33 H 1.09001 * 109.47064 * 119.99874 * 2 1 3 34 34 H 1.09000 * 109.46797 * 60.00264 * 3 2 1 35 35 H 1.08995 * 109.46761 * 299.99703 * 3 2 1 36 36 H 1.08994 * 109.47283 * 59.99789 * 4 3 2 37 37 H 1.09001 * 109.47064 * 299.99874 * 4 3 2 38 38 H 1.09003 * 109.47252 * 59.99982 * 5 4 3 39 39 H 1.09001 * 109.47044 * 299.99814 * 5 4 3 40 40 H 1.09000 * 109.44846 * 173.47121 * 7 6 5 41 41 H 1.09007 * 109.44630 * 293.39309 * 7 6 5 42 42 H 1.09001 * 109.70110 * 169.21046 * 8 7 6 43 43 H 1.08994 * 109.70899 * 289.78727 * 8 7 6 44 44 H 1.09000 * 113.46613 * 321.94649 * 14 13 11 45 45 H 1.09006 * 113.46505 * 92.38031 * 14 13 11 46 46 H 1.08992 * 114.19930 * 87.73209 * 15 14 13 47 47 H 0.96996 * 120.00039 * 180.02562 * 19 18 16 48 48 H 1.09010 * 113.46616 * 267.62235 * 24 13 11 49 49 H 1.08994 * 113.47069 * 38.05669 * 24 13 11 50 50 H 1.07997 * 126.06710 * 179.97438 * 25 10 9 51 51 H 1.09000 * 109.73164 * 45.79941 * 28 6 5 52 52 H 1.08996 * 109.73412 * 166.48192 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 7 5.5489 2.8851 0.0025 7 6 6.0759 4.2366 -0.2351 8 6 5.4555 5.2150 0.7706 9 7 5.5891 4.6408 2.1116 10 6 5.4646 5.2666 3.3274 11 6 5.1604 6.6828 3.5632 12 8 5.0892 7.4543 2.6249 13 7 4.9599 7.1289 4.8191 14 6 5.0293 6.5539 6.1709 15 6 3.9935 7.5939 6.6108 16 6 4.2560 8.1964 7.9670 17 1 4.8078 9.1212 8.0494 18 6 3.7919 7.5671 9.1025 19 7 3.1196 6.4412 9.0022 20 14 4.1180 8.3136 10.7836 21 1 3.0082 9.2336 11.1403 22 1 4.2089 7.2315 11.7965 23 1 5.3959 9.0691 10.7502 24 6 4.5689 8.4033 5.4404 25 6 5.6822 4.3029 4.2753 26 7 5.9247 3.1527 3.6417 27 6 5.8705 3.3417 2.3531 28 6 6.0758 2.3219 1.2575 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8890 37 1 3.9329 0.9289 0.8909 38 1 3.7162 3.3987 0.8913 39 1 3.7170 3.3992 -0.8887 40 1 7.1592 4.2301 -0.1144 41 1 5.8258 4.5506 -1.2485 42 1 5.9796 6.1697 0.7256 43 1 4.4013 5.3632 0.5369 44 1 4.6633 5.5287 6.2258 45 1 6.0015 6.6810 6.6473 46 1 2.9589 7.2805 6.4716 47 1 2.7928 5.9986 9.8010 48 1 5.4172 9.0281 5.7202 49 1 3.8121 8.9475 4.8755 50 1 5.6611 4.4473 5.3453 51 1 5.5397 1.4052 1.5030 52 1 7.1390 2.1089 1.1475 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278230124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:29 Heat of formation + Delta-G solvation = 59.695336 kcal Electronic energy + Delta-G solvation = -30844.857382 eV Core-core repulsion = 26846.317848 eV Total energy + Delta-G solvation = -3998.539534 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.52436 -39.48622 -38.60122 -37.10505 -36.02810 -33.85583 -32.75523 -31.69055 -30.63850 -29.81444 -28.60584 -26.86465 -25.46024 -25.24600 -24.62468 -23.16945 -22.51332 -21.55728 -21.29705 -20.44478 -19.00503 -18.52112 -17.11154 -16.76124 -16.40970 -16.39379 -15.94577 -15.75419 -15.48895 -14.91716 -14.79938 -14.56812 -14.37293 -14.06168 -13.89475 -13.77663 -13.35645 -13.25661 -12.95119 -12.72117 -12.57624 -12.35014 -12.21738 -12.12891 -11.95779 -11.71259 -11.61450 -11.36616 -11.26839 -11.16142 -10.97968 -10.91073 -10.87623 -10.73216 -10.40896 -10.21590 -9.70310 -9.64681 -9.29549 -9.12730 -8.95106 -8.62772 -8.41009 -7.94890 -6.21672 -4.28067 1.47913 2.41157 2.92126 3.22467 3.30345 3.32212 3.37907 3.55242 3.66189 4.06044 4.28378 4.30915 4.39671 4.55206 4.63759 4.74126 4.80780 4.84871 4.95574 5.05527 5.07720 5.11087 5.23570 5.25542 5.26910 5.32328 5.34374 5.42621 5.50112 5.53637 5.59886 5.64165 5.71674 5.79827 5.88956 5.89670 6.02828 6.06558 6.08146 6.09343 6.22418 6.34674 6.40470 6.47752 6.50998 6.58559 6.63111 6.81024 7.05113 7.49203 7.75512 7.98667 8.11728 8.31702 8.59409 8.76087 9.39279 10.87949 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.002494 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.915289 B =11224.342904 C =12462.586372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.116 4.116 5 C 0.045 3.955 6 N -0.528 5.528 7 C 0.040 3.960 8 C 0.070 3.930 9 N -0.425 5.425 10 C -0.060 4.060 11 C 0.608 3.392 12 O -0.573 6.573 13 N -0.629 5.629 14 C 0.092 3.908 15 C 0.036 3.964 16 C -0.519 4.519 17 H 0.064 0.936 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.106 3.894 25 C 0.031 3.969 26 N -0.483 5.483 27 C 0.181 3.819 28 C 0.137 3.863 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.040 0.960 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.265 0.735 48 H 0.077 0.923 49 H 0.059 0.941 50 H 0.187 0.813 51 H 0.111 0.889 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 -10.912 -19.087 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.083 4.083 6 N -0.249 5.249 7 C -0.089 4.089 8 C -0.054 4.054 9 N -0.108 5.108 10 C -0.177 4.177 11 C 0.398 3.602 12 O -0.455 6.455 13 N -0.361 5.361 14 C -0.030 4.030 15 C 0.017 3.983 16 C -0.557 4.557 17 H 0.083 0.917 18 C -0.135 4.135 19 N -0.520 5.520 20 Si 0.724 3.276 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.016 4.016 25 C -0.122 4.122 26 N -0.202 5.202 27 C -0.083 4.083 28 C 0.008 3.992 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.204 0.796 51 H 0.129 0.871 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.077 -11.675 -19.868 23.137 hybrid contribution -0.259 1.720 1.367 2.212 sum 1.817 -9.955 -18.501 21.087 Atomic orbital electron populations 1.21783 0.95924 1.01563 1.01877 1.21507 0.95839 0.96674 1.02039 1.21580 0.94961 0.97100 1.02177 1.21620 0.95208 0.95625 1.02875 1.22298 0.86303 0.98242 1.01443 1.62496 1.08786 1.21123 1.32509 1.22679 1.00775 0.86414 0.98984 1.22731 1.03789 0.99618 0.79236 1.45010 1.50816 1.08718 1.06232 1.20698 1.16035 0.95570 0.85389 1.16226 0.77267 0.84614 0.82091 1.90725 1.55274 1.57592 1.41916 1.49644 1.65240 1.16960 1.04275 1.23806 1.01886 1.00486 0.76795 1.20302 0.95202 0.90731 0.92041 1.20871 1.36384 1.08920 0.89515 0.91732 1.25031 0.94194 0.94744 0.99515 1.69948 1.35821 1.16557 1.29673 0.86521 0.78855 0.78894 0.83354 1.20487 1.21086 1.19678 1.23420 0.98390 0.86946 0.92795 1.23231 1.01737 0.87273 0.99956 1.69861 1.20382 1.27268 1.02661 1.24338 1.04514 0.84915 0.94529 1.21077 1.02692 0.94112 0.81369 0.92845 0.92810 0.92649 0.92041 0.91934 0.91999 0.91973 0.90875 0.91577 0.94163 0.90245 0.89205 0.87712 0.87507 0.89432 0.91515 0.90168 0.91235 0.92518 0.90494 0.92232 0.79597 0.87065 0.87645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.90 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -0.95 5.21 -26.73 -0.14 -1.09 16 4 C -0.12 -0.92 5.17 -26.73 -0.14 -1.06 16 5 C 0.04 0.40 4.02 -3.83 -0.02 0.39 16 6 N -0.53 -4.73 4.97 -235.15 -1.17 -5.89 16 7 C 0.04 0.34 5.96 -3.56 -0.02 0.32 16 8 C 0.07 0.85 5.51 -3.83 -0.02 0.83 16 9 N -0.43 -6.55 2.90 -109.70 -0.32 -6.87 16 10 C -0.06 -1.11 6.94 -82.45 -0.57 -1.69 16 11 C 0.61 12.49 8.04 -12.81 -0.10 12.39 16 12 O -0.57 -12.63 16.27 5.20 0.08 -12.54 16 13 N -0.63 -12.94 3.69 -186.94 -0.69 -13.63 16 14 C 0.09 1.92 6.70 -8.65 -0.06 1.86 16 15 C 0.04 0.84 3.77 -91.39 -0.34 0.49 16 16 C -0.52 -12.91 8.82 -34.44 -0.30 -13.22 16 17 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 18 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 19 N -0.88 -23.72 13.26 55.43 0.74 -22.99 16 20 Si 0.90 19.83 29.54 -169.99 -5.02 14.80 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 C 0.11 2.17 8.19 -8.52 -0.07 2.10 16 25 C 0.03 0.56 11.00 -17.29 -0.19 0.37 16 26 N -0.48 -8.27 11.19 -10.32 -0.12 -8.39 16 27 C 0.18 2.62 6.98 -155.30 -1.08 1.53 16 28 C 0.14 1.40 6.07 -4.57 -0.03 1.37 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.57 6.30 -51.93 -0.33 0.24 16 38 H 0.04 0.47 6.24 -51.93 -0.32 0.15 16 39 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.09 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.11 1.41 7.38 -51.93 -0.38 1.03 16 43 H 0.09 1.07 7.21 -51.93 -0.37 0.70 16 44 H 0.07 1.38 6.18 -51.93 -0.32 1.06 16 45 H 0.08 1.63 8.10 -51.93 -0.42 1.20 16 46 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 47 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.08 1.50 8.10 -51.92 -0.42 1.08 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 50 H 0.19 3.30 5.26 -52.49 -0.28 3.03 16 51 H 0.11 1.05 5.99 -51.93 -0.31 0.74 16 52 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -29.70 407.55 -11.94 -41.64 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.61 Total: 3.21 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.98 Total: 4.51 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -1.56 Total: -57.77 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -29.70 -11.94 -41.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278230124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.336 kcal (2) G-P(sol) polarization free energy of solvation -29.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds