Wall clock time and date at job start Wed Apr 1 2020 03:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46747 * 2 1 4 4 C 1.53000 * 109.47660 * 119.99710 * 2 1 3 5 5 C 1.53004 * 109.46682 * 65.34623 * 4 2 1 6 6 H 1.09006 * 109.47097 * 305.29209 * 5 4 2 7 7 C 1.50703 * 109.47009 * 185.29429 * 5 4 2 8 8 O 1.21280 * 120.00033 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00077 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00275 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47475 * 180.02562 * 10 9 7 12 12 H 1.09004 * 115.51397 * 330.41490 * 11 10 9 13 13 C 1.52996 * 117.44441 * 184.99973 * 11 10 9 14 14 H 1.09000 * 119.54128 * 4.11730 * 13 11 10 15 15 C 1.54386 * 118.12490 * 160.80690 * 13 11 10 16 16 N 1.48143 * 104.61784 * 87.18702 * 15 13 11 17 17 C 1.36942 * 127.83580 * 140.38989 * 16 15 13 18 18 H 1.08002 * 120.00038 * 193.38278 * 17 16 15 19 19 C 1.38809 * 120.00273 * 13.38903 * 17 16 15 20 20 N 1.31627 * 119.99654 * 13.37056 * 19 17 16 21 21 Si 1.86794 * 120.00328 * 193.37252 * 19 17 16 22 22 H 1.48504 * 109.47210 * 94.97253 * 21 19 17 23 23 H 1.48501 * 109.47131 * 214.97439 * 21 19 17 24 24 H 1.48503 * 109.46917 * 334.97580 * 21 19 17 25 25 C 1.48146 * 104.32711 * 320.42015 * 16 15 13 26 26 C 1.52996 * 117.44501 * 115.75690 * 11 10 9 27 27 H 1.09004 * 119.53902 * 355.88592 * 26 11 10 28 28 N 1.46495 * 109.47160 * 65.29481 * 5 4 2 29 29 C 1.36883 * 126.40075 * 237.30730 * 28 5 4 30 30 C 1.34660 * 106.82123 * 180.02562 * 29 28 5 31 31 N 1.34133 * 108.02286 * 359.97438 * 30 29 28 32 32 C 1.30507 * 109.25043 * 359.72635 * 31 30 29 33 33 H 1.09005 * 109.47318 * 299.99667 * 1 2 3 34 34 H 1.08996 * 109.47678 * 60.00176 * 1 2 3 35 35 H 1.09002 * 109.46727 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.47085 * 240.00438 * 2 1 3 37 37 H 1.09004 * 109.47500 * 295.62270 * 3 2 1 38 38 H 1.09004 * 109.47328 * 55.62469 * 3 2 1 39 39 H 1.09003 * 109.47713 * 175.62247 * 3 2 1 40 40 H 1.08994 * 109.47042 * 305.35017 * 4 2 1 41 41 H 1.08999 * 109.47536 * 185.34739 * 4 2 1 42 42 H 0.97007 * 119.99685 * 0.02562 * 9 7 5 43 43 H 1.09003 * 109.47106 * 59.99824 * 10 9 7 44 44 H 1.09000 * 109.46900 * 300.00423 * 10 9 7 45 45 H 1.08997 * 110.41088 * 205.97763 * 15 13 11 46 46 H 1.09005 * 110.40519 * 328.41209 * 15 13 11 47 47 H 0.96999 * 119.99879 * 180.02562 * 20 19 17 48 48 H 1.09000 * 110.40732 * 280.79873 * 25 16 15 49 49 H 1.09002 * 110.50968 * 158.41492 * 25 16 15 50 50 H 1.08002 * 126.58545 * 359.95797 * 29 28 5 51 51 H 1.08004 * 125.99325 * 179.97438 * 30 29 28 52 52 H 1.08004 * 125.64767 * 180.29063 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6428 -2.1973 1.1838 6 1 0.5652 -2.2775 1.0402 7 6 2.0302 -2.8792 2.4707 8 8 2.5704 -2.2468 3.3534 9 7 1.7755 -4.1916 2.6411 10 6 2.1515 -4.8545 3.8922 11 6 1.7544 -6.3306 3.8269 12 1 0.8866 -6.5563 3.2070 13 6 1.9580 -7.1721 5.0883 14 1 2.3087 -6.6936 6.0027 15 6 1.1768 -8.4979 5.2126 16 7 2.0355 -9.5020 4.5426 17 6 2.2764 -10.7934 4.9295 18 1 3.0843 -11.3505 4.4785 19 6 1.4822 -11.3865 5.9012 20 7 0.3497 -10.8204 6.2612 21 14 2.0204 -12.9880 6.6979 22 1 2.7357 -12.6943 7.9657 23 1 0.8268 -13.8236 6.9851 24 1 2.9265 -13.7193 5.7762 25 6 2.5752 -8.7921 3.3596 26 6 2.8800 -7.3661 3.8666 27 1 3.9176 -7.0320 3.8709 28 7 2.3340 -2.8398 0.0634 29 6 1.7468 -3.4976 -0.9836 30 6 2.7430 -3.9312 -1.7793 31 7 3.9068 -3.5480 -1.2335 32 6 3.6692 -2.8885 -0.1327 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8900 37 1 1.7420 1.9333 -0.9266 38 1 1.6139 1.9785 0.8482 39 1 3.1271 1.4437 0.0784 40 1 1.6007 -0.2656 2.1366 41 1 3.1259 -0.6390 1.2984 42 1 1.3430 -4.6974 1.9352 43 1 1.6372 -4.3760 4.7257 44 1 3.2290 -4.7745 4.0361 45 1 1.0346 -8.7584 6.2614 46 1 0.2150 -8.4213 4.7053 47 1 -0.2051 -11.2346 6.9404 48 1 1.8318 -8.7614 2.5630 49 1 3.4877 -9.2738 3.0085 50 1 0.6881 -3.6422 -1.1407 51 1 2.6255 -4.4895 -2.6964 52 1 4.4169 -2.4560 0.5157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282859429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:06 Heat of formation + Delta-G solvation = 76.936001 kcal Electronic energy + Delta-G solvation = -30452.715837 eV Core-core repulsion = 26454.923914 eV Total energy + Delta-G solvation = -3997.791923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.51561 -40.11755 -38.88319 -37.27011 -35.20242 -34.07895 -33.32890 -30.92234 -30.16896 -29.23340 -27.68583 -27.66103 -27.17829 -25.46151 -24.29496 -22.01918 -21.58744 -21.24319 -20.88938 -20.20195 -19.83755 -19.32444 -18.15286 -17.14714 -16.83801 -16.57679 -15.78280 -15.36186 -15.10190 -14.76585 -14.70635 -14.48629 -14.23731 -14.20711 -13.93952 -13.73468 -13.60314 -13.28305 -13.00118 -12.81806 -12.71935 -12.71184 -12.62732 -12.20254 -11.92215 -11.42567 -11.32344 -11.25620 -11.16828 -11.11171 -10.85947 -10.73032 -10.67182 -10.36515 -10.18945 -10.15440 -9.79126 -9.74444 -9.54678 -9.21460 -9.08781 -8.75441 -8.67340 -6.93211 -5.84023 -3.15708 1.71919 1.83615 2.72718 2.73230 2.99023 3.36508 3.42411 3.44175 3.95449 4.03124 4.13527 4.31593 4.43316 4.45015 4.49808 4.51428 4.61620 4.73489 4.78713 5.14276 5.17341 5.19757 5.20411 5.25627 5.31037 5.36844 5.37526 5.40990 5.42785 5.45333 5.48433 5.67134 5.70344 5.77062 5.79586 5.82283 5.89022 5.90538 5.95821 6.12817 6.15536 6.48360 6.48703 6.59650 6.64571 6.84435 6.86059 7.13606 7.29357 7.46767 7.67702 7.77957 7.85247 8.15586 9.07053 9.70497 10.46450 11.30711 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.002032 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.328151 B =13778.227562 C =14452.290893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.098 4.098 3 C -0.145 4.145 4 C -0.109 4.109 5 C 0.118 3.882 6 H 0.125 0.875 7 C 0.503 3.497 8 O -0.526 6.526 9 N -0.711 5.711 10 C 0.154 3.846 11 C -0.152 4.152 12 H 0.102 0.898 13 C -0.160 4.160 14 H 0.104 0.896 15 C 0.184 3.816 16 N -0.594 5.594 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.915 5.915 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.154 3.846 26 C -0.169 4.169 27 H 0.103 0.897 28 N -0.450 5.450 29 C -0.058 4.058 30 C -0.024 4.024 31 N -0.490 5.490 32 C 0.192 3.808 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.093 0.907 41 H 0.080 0.920 42 H 0.403 0.597 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.023 0.977 47 H 0.254 0.746 48 H 0.023 0.977 49 H 0.051 0.949 50 H 0.175 0.825 51 H 0.170 0.830 52 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 23.559 -13.625 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.147 4.147 5 C 0.011 3.989 6 H 0.143 0.857 7 C 0.286 3.714 8 O -0.401 6.401 9 N -0.361 5.361 10 C 0.031 3.969 11 C -0.171 4.171 12 H 0.120 0.880 13 C -0.181 4.181 14 H 0.122 0.878 15 C 0.058 3.942 16 N -0.317 5.317 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.561 5.561 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.028 3.972 26 C -0.189 4.189 27 H 0.121 0.879 28 N -0.135 5.135 29 C -0.190 4.190 30 C -0.171 4.171 31 N -0.207 5.207 32 C -0.090 4.090 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.238 0.762 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.108 0.892 46 H 0.041 0.959 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.069 0.931 50 H 0.192 0.808 51 H 0.187 0.813 52 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.176 23.641 -13.009 26.985 hybrid contribution -0.859 -0.946 0.469 1.361 sum -0.683 22.696 -12.540 25.939 Atomic orbital electron populations 1.21925 0.94981 1.01598 1.02312 1.21135 0.96031 0.96709 0.97795 1.21798 1.01214 0.95309 1.01939 1.21848 1.03048 0.90146 0.99681 1.21760 0.99640 0.94373 0.83159 0.85749 1.20476 0.79687 0.82581 0.88671 1.90759 1.41491 1.64430 1.43413 1.46060 1.61090 1.09330 1.19649 1.20953 1.00306 0.90545 0.85104 1.22506 1.00833 0.90031 1.03698 0.87995 1.24229 1.03704 0.99243 0.90888 0.87826 1.21048 0.90492 0.82387 1.00262 1.45233 1.53983 1.09239 1.23284 1.19025 1.10705 0.87121 1.18666 0.90436 1.24854 0.95713 0.98691 1.01114 1.69932 1.11577 1.40739 1.33839 0.86102 0.77513 0.82594 0.79588 1.21516 1.21717 1.20464 1.21126 0.96931 0.88699 0.90450 1.23989 0.94627 0.96328 1.03925 0.87908 1.45462 1.07675 1.41830 1.18559 1.22762 1.00207 1.04563 0.91442 1.22324 0.87885 1.05145 1.01770 1.70366 1.28218 1.14239 1.07924 1.24937 0.83642 1.02658 0.97746 0.92262 0.92311 0.92900 0.90858 0.92512 0.92433 0.92480 0.88825 0.90141 0.76241 0.90783 0.91185 0.89224 0.95886 0.93574 0.95891 0.93092 0.80816 0.81323 0.78447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 8.96 37.16 0.33 -0.40 16 2 C -0.10 -0.57 2.86 -90.62 -0.26 -0.83 16 3 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 4 C -0.11 -0.74 3.46 -26.73 -0.09 -0.83 16 5 C 0.12 0.84 2.65 -69.08 -0.18 0.66 16 6 H 0.12 0.65 6.29 -51.93 -0.33 0.32 16 7 C 0.50 5.22 7.12 -10.99 -0.08 5.14 16 8 O -0.53 -7.17 15.91 5.56 0.09 -7.08 16 9 N -0.71 -7.41 5.56 -60.30 -0.33 -7.75 16 10 C 0.15 1.93 5.95 -4.04 -0.02 1.91 16 11 C -0.15 -2.23 5.39 -90.62 -0.49 -2.71 16 12 H 0.10 1.49 8.04 -51.93 -0.42 1.08 16 13 C -0.16 -2.93 6.85 -89.22 -0.61 -3.55 16 14 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 15 C 0.18 4.32 5.73 -2.41 -0.01 4.31 16 16 N -0.59 -15.08 3.38 -168.86 -0.57 -15.65 16 17 C -0.23 -6.30 10.34 -15.06 -0.16 -6.46 16 18 H 0.08 2.09 7.86 -52.49 -0.41 1.68 16 19 C -0.01 -0.19 5.36 -17.43 -0.09 -0.28 16 20 N -0.91 -26.57 10.94 55.49 0.61 -25.96 16 21 Si 0.91 21.86 29.57 -169.99 -5.03 16.84 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C 0.15 3.20 7.04 -2.41 -0.02 3.18 16 26 C -0.17 -2.93 6.74 -89.22 -0.60 -3.53 16 27 H 0.10 1.68 8.12 -51.93 -0.42 1.26 16 28 N -0.45 -3.57 1.99 -112.69 -0.22 -3.79 16 29 C -0.06 -0.44 11.54 -16.56 -0.19 -0.63 16 30 C -0.02 -0.23 11.87 -17.81 -0.21 -0.44 16 31 N -0.49 -5.87 11.25 -14.66 -0.16 -6.04 16 32 C 0.19 1.94 11.56 -90.37 -1.04 0.89 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.23 6.47 -51.93 -0.34 -0.10 16 36 H 0.07 0.52 7.62 -51.93 -0.40 0.12 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.67 7.94 -51.93 -0.41 0.26 16 41 H 0.08 0.61 7.66 -51.93 -0.40 0.22 16 42 H 0.40 3.66 8.40 -40.82 -0.34 3.32 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 45 H 0.09 2.37 6.51 -51.93 -0.34 2.03 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 51 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 52 H 0.20 1.74 7.98 -52.48 -0.42 1.32 16 LS Contribution 419.23 15.07 6.32 6.32 Total: -1.00 -32.68 419.23 -11.54 -44.22 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -8.84 Total: 2.93 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -3.39 Total: -4.03 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.69 Total: -59.19 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: 0.09 Total: -7.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -32.68 -11.54 -44.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282859429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.156 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds