Wall clock time and date at job start Wed Apr 1 2020 03:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46747 * 2 1 4 4 C 1.53000 * 109.47660 * 119.99710 * 2 1 3 5 5 C 1.53004 * 109.46682 * 65.34623 * 4 2 1 6 6 H 1.09006 * 109.47097 * 305.29209 * 5 4 2 7 7 C 1.50703 * 109.47009 * 185.29429 * 5 4 2 8 8 O 1.21280 * 120.00033 * 0.02562 * 7 5 4 9 9 N 1.34773 * 120.00077 * 179.97438 * 7 5 4 10 10 C 1.46498 * 120.00275 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47475 * 180.02562 * 10 9 7 12 12 H 1.09004 * 115.51397 * 330.41490 * 11 10 9 13 13 C 1.52996 * 117.44441 * 184.99973 * 11 10 9 14 14 H 1.09000 * 119.54128 * 4.11730 * 13 11 10 15 15 C 1.54386 * 118.12490 * 160.80690 * 13 11 10 16 16 N 1.48143 * 104.61784 * 87.18702 * 15 13 11 17 17 C 1.36942 * 127.83580 * 140.38989 * 16 15 13 18 18 H 1.08002 * 120.00038 * 193.38278 * 17 16 15 19 19 C 1.38809 * 120.00273 * 13.38903 * 17 16 15 20 20 N 1.31627 * 119.99654 * 13.37056 * 19 17 16 21 21 Si 1.86794 * 120.00328 * 193.37252 * 19 17 16 22 22 H 1.48504 * 109.47210 * 94.97253 * 21 19 17 23 23 H 1.48501 * 109.47131 * 214.97439 * 21 19 17 24 24 H 1.48503 * 109.46917 * 334.97580 * 21 19 17 25 25 C 1.48146 * 104.32711 * 320.42015 * 16 15 13 26 26 C 1.52996 * 117.44501 * 115.75690 * 11 10 9 27 27 H 1.09004 * 119.53902 * 355.88592 * 26 11 10 28 28 N 1.46495 * 109.47160 * 65.29481 * 5 4 2 29 29 C 1.36883 * 126.40075 * 237.30730 * 28 5 4 30 30 C 1.34660 * 106.82123 * 180.02562 * 29 28 5 31 31 N 1.34133 * 108.02286 * 359.97438 * 30 29 28 32 32 C 1.30507 * 109.25043 * 359.72635 * 31 30 29 33 33 H 1.09005 * 109.47318 * 299.99667 * 1 2 3 34 34 H 1.08996 * 109.47678 * 60.00176 * 1 2 3 35 35 H 1.09002 * 109.46727 * 180.02562 * 1 2 3 36 36 H 1.08996 * 109.47085 * 240.00438 * 2 1 3 37 37 H 1.09004 * 109.47500 * 295.62270 * 3 2 1 38 38 H 1.09004 * 109.47328 * 55.62469 * 3 2 1 39 39 H 1.09003 * 109.47713 * 175.62247 * 3 2 1 40 40 H 1.08994 * 109.47042 * 305.35017 * 4 2 1 41 41 H 1.08999 * 109.47536 * 185.34739 * 4 2 1 42 42 H 0.97007 * 119.99685 * 0.02562 * 9 7 5 43 43 H 1.09003 * 109.47106 * 59.99824 * 10 9 7 44 44 H 1.09000 * 109.46900 * 300.00423 * 10 9 7 45 45 H 1.08997 * 110.41088 * 205.97763 * 15 13 11 46 46 H 1.09005 * 110.40519 * 328.41209 * 15 13 11 47 47 H 0.96999 * 119.99879 * 180.02562 * 20 19 17 48 48 H 1.09000 * 110.40732 * 280.79873 * 25 16 15 49 49 H 1.09002 * 110.50968 * 158.41492 * 25 16 15 50 50 H 1.08002 * 126.58545 * 359.95797 * 29 28 5 51 51 H 1.08004 * 125.99325 * 179.97438 * 30 29 28 52 52 H 1.08004 * 125.64767 * 180.29063 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6428 -2.1973 1.1838 6 1 0.5652 -2.2775 1.0402 7 6 2.0302 -2.8792 2.4707 8 8 2.5704 -2.2468 3.3534 9 7 1.7755 -4.1916 2.6411 10 6 2.1515 -4.8545 3.8922 11 6 1.7544 -6.3306 3.8269 12 1 0.8866 -6.5563 3.2070 13 6 1.9580 -7.1721 5.0883 14 1 2.3087 -6.6936 6.0027 15 6 1.1768 -8.4979 5.2126 16 7 2.0355 -9.5020 4.5426 17 6 2.2764 -10.7934 4.9295 18 1 3.0843 -11.3505 4.4785 19 6 1.4822 -11.3865 5.9012 20 7 0.3497 -10.8204 6.2612 21 14 2.0204 -12.9880 6.6979 22 1 2.7357 -12.6943 7.9657 23 1 0.8268 -13.8236 6.9851 24 1 2.9265 -13.7193 5.7762 25 6 2.5752 -8.7921 3.3596 26 6 2.8800 -7.3661 3.8666 27 1 3.9176 -7.0320 3.8709 28 7 2.3340 -2.8398 0.0634 29 6 1.7468 -3.4976 -0.9836 30 6 2.7430 -3.9312 -1.7793 31 7 3.9068 -3.5480 -1.2335 32 6 3.6692 -2.8885 -0.1327 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8899 35 1 -0.3633 -1.0277 0.0005 36 1 1.8933 -0.5137 -0.8900 37 1 1.7420 1.9333 -0.9266 38 1 1.6139 1.9785 0.8482 39 1 3.1271 1.4437 0.0784 40 1 1.6007 -0.2656 2.1366 41 1 3.1259 -0.6390 1.2984 42 1 1.3430 -4.6974 1.9352 43 1 1.6372 -4.3760 4.7257 44 1 3.2290 -4.7745 4.0361 45 1 1.0346 -8.7584 6.2614 46 1 0.2150 -8.4213 4.7053 47 1 -0.2051 -11.2346 6.9404 48 1 1.8318 -8.7614 2.5630 49 1 3.4877 -9.2738 3.0085 50 1 0.6881 -3.6422 -1.1407 51 1 2.6255 -4.4895 -2.6964 52 1 4.4169 -2.4560 0.5157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282859429.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:05 Heat of formation + Delta-G solvation = 59.362338 kcal Electronic energy + Delta-G solvation = -30453.477888 eV Core-core repulsion = 26454.923914 eV Total energy + Delta-G solvation = -3998.553974 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.19038 -41.05655 -40.30786 -37.85627 -36.42734 -35.15940 -34.53837 -32.73111 -30.84790 -29.90777 -29.05195 -28.84968 -28.04268 -26.94035 -25.24967 -23.02786 -22.63430 -22.21944 -21.90424 -21.12403 -20.87681 -20.64568 -18.98109 -18.80656 -17.82768 -17.43489 -16.84481 -16.46846 -16.23946 -15.98866 -15.65231 -15.35283 -15.24599 -15.03745 -14.80056 -14.71387 -14.60660 -14.50809 -14.31655 -14.07067 -13.62203 -13.41473 -13.23735 -13.21259 -13.05256 -12.92170 -12.75368 -12.67268 -12.33750 -12.02431 -11.96938 -11.85613 -11.78649 -11.73486 -11.57576 -11.50234 -10.99104 -10.90817 -10.73317 -10.68881 -10.42363 -10.16761 -9.40906 -8.95567 -7.94835 -5.28206 1.00579 1.13498 1.45042 1.46868 1.55980 1.89484 2.02968 2.27164 2.45918 2.67812 3.21690 3.37616 3.44332 3.56511 3.66807 3.78675 3.79940 3.85415 3.91308 4.03649 4.07781 4.15374 4.22536 4.29858 4.37810 4.51546 4.58181 4.62644 4.66879 4.68132 4.72943 4.79884 4.83304 4.89850 4.95182 4.98145 5.01616 5.04728 5.10595 5.26776 5.28717 5.31087 5.35181 5.41474 5.42723 5.46104 5.49486 5.63240 5.86250 6.14575 6.16438 6.32275 6.96776 6.98825 7.16655 7.66153 8.43657 9.19284 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020473 B = 0.002032 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.328151 B =13778.227562 C =14452.290893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.105 4.105 5 C 0.128 3.872 6 H 0.155 0.845 7 C 0.505 3.495 8 O -0.559 6.559 9 N -0.706 5.706 10 C 0.163 3.837 11 C -0.108 4.108 12 H 0.109 0.891 13 C -0.172 4.172 14 H 0.115 0.885 15 C 0.189 3.811 16 N -0.620 5.620 17 C -0.241 4.241 18 H 0.079 0.921 19 C -0.063 4.063 20 N -0.945 5.945 21 Si 0.978 3.022 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.267 1.267 25 C 0.149 3.851 26 C -0.163 4.163 27 H 0.120 0.880 28 N -0.442 5.442 29 C -0.038 4.038 30 C -0.053 4.053 31 N -0.527 5.527 32 C 0.178 3.822 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.413 0.587 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.004 0.996 47 H 0.250 0.750 48 H 0.027 0.973 49 H 0.053 0.947 50 H 0.210 0.790 51 H 0.180 0.820 52 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 24.760 -14.716 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.143 4.143 5 C 0.022 3.978 6 H 0.172 0.828 7 C 0.289 3.711 8 O -0.436 6.436 9 N -0.357 5.357 10 C 0.040 3.960 11 C -0.127 4.127 12 H 0.127 0.873 13 C -0.193 4.193 14 H 0.133 0.867 15 C 0.064 3.936 16 N -0.344 5.344 17 C -0.370 4.370 18 H 0.097 0.903 19 C -0.256 4.256 20 N -0.593 5.593 21 Si 0.806 3.194 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.192 1.192 25 C 0.024 3.976 26 C -0.183 4.183 27 H 0.138 0.862 28 N -0.128 5.128 29 C -0.170 4.170 30 C -0.200 4.200 31 N -0.246 5.246 32 C -0.105 4.105 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.249 0.751 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.022 0.978 47 H 0.059 0.941 48 H 0.045 0.955 49 H 0.072 0.928 50 H 0.227 0.773 51 H 0.197 0.803 52 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.335 24.858 -14.145 28.603 hybrid contribution -0.699 -1.290 0.744 1.644 sum -1.034 23.569 -13.401 27.132 Atomic orbital electron populations 1.21931 0.93877 1.02361 1.02610 1.21046 0.96838 0.96400 0.96586 1.21806 1.00854 0.95376 1.02318 1.21812 1.02367 0.90015 1.00154 1.21769 1.00986 0.93822 0.81205 0.82770 1.20935 0.78674 0.82166 0.89277 1.90755 1.42862 1.65094 1.44870 1.45945 1.61069 1.09533 1.19139 1.20717 1.00089 0.88892 0.86333 1.22403 0.99490 0.90640 1.00140 0.87270 1.23914 1.04101 0.98486 0.92770 0.86737 1.20795 0.90457 0.84798 0.97599 1.45551 1.54458 1.09192 1.25244 1.19375 1.10526 0.88418 1.18665 0.90278 1.25680 0.95899 1.02169 1.01891 1.70109 1.12613 1.42211 1.34354 0.85071 0.76982 0.78822 0.78528 1.21417 1.21963 1.19168 1.21261 0.96806 0.90280 0.89243 1.23892 0.96180 0.95424 1.02799 0.86247 1.45453 1.07068 1.41535 1.18703 1.23260 1.01362 1.02292 0.90037 1.22670 0.87929 1.06433 1.02949 1.70308 1.29909 1.15366 1.09022 1.24992 0.84688 1.03072 0.97710 0.92022 0.92035 0.91880 0.91925 0.92099 0.92083 0.93134 0.88960 0.91367 0.75113 0.90469 0.91588 0.92925 0.97796 0.94074 0.95527 0.92840 0.77282 0.80324 0.78229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.96 71.98 0.65 -0.37 16 2 C -0.09 -0.85 2.86 -10.79 -0.03 -0.88 16 3 C -0.15 -1.40 9.19 71.98 0.66 -0.74 16 4 C -0.11 -1.23 3.46 30.60 0.11 -1.12 16 5 C 0.13 1.47 2.65 44.25 0.12 1.59 16 6 H 0.15 0.91 6.29 -2.38 -0.01 0.90 16 7 C 0.51 9.22 7.12 87.66 0.62 9.84 16 8 O -0.56 -14.27 15.91 -3.03 -0.05 -14.32 16 9 N -0.71 -12.60 5.56 -463.07 -2.57 -15.17 16 10 C 0.16 3.67 5.95 86.38 0.51 4.18 16 11 C -0.11 -2.91 5.39 -10.80 -0.06 -2.97 16 12 H 0.11 2.88 8.04 -2.38 -0.02 2.86 16 13 C -0.17 -6.17 6.85 -9.89 -0.07 -6.24 16 14 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 15 C 0.19 9.09 5.73 86.53 0.50 9.59 16 16 N -0.62 -31.90 3.38 -688.16 -2.33 -34.23 16 17 C -0.24 -13.56 10.34 84.03 0.87 -12.69 16 18 H 0.08 4.29 7.86 -2.91 -0.02 4.27 16 19 C -0.06 -3.55 5.36 84.86 0.45 -3.10 16 20 N -0.95 -56.49 10.94 21.65 0.24 -56.25 16 21 Si 0.98 45.52 29.57 68.60 2.03 47.55 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.15 6.09 7.04 86.53 0.61 6.70 16 26 C -0.16 -5.38 6.74 -9.89 -0.07 -5.45 16 27 H 0.12 3.60 8.12 -2.38 -0.02 3.58 16 28 N -0.44 -5.95 1.99 -510.45 -1.01 -6.96 16 29 C -0.04 -0.45 11.54 83.08 0.96 0.51 16 30 C -0.05 -0.95 11.87 83.52 0.99 0.04 16 31 N -0.53 -12.28 11.25 -200.30 -2.25 -14.53 16 32 C 0.18 3.39 11.56 180.26 2.08 5.47 16 33 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.06 0.30 6.47 -2.39 -0.02 0.28 16 36 H 0.06 0.76 7.62 -2.39 -0.02 0.74 16 37 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 1.15 7.94 -2.39 -0.02 1.13 16 41 H 0.07 0.98 7.66 -2.39 -0.02 0.96 16 42 H 0.41 5.96 8.40 -92.70 -0.78 5.18 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 1.61 7.94 -2.39 -0.02 1.59 16 45 H 0.05 2.89 6.51 -2.39 -0.02 2.88 16 46 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 47 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 48 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.21 0.91 8.06 -2.91 -0.02 0.89 16 51 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 52 H 0.20 3.47 7.98 -2.91 -0.02 3.45 16 Total: -1.00 -72.95 419.23 3.08 -69.87 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.12 Total: 19.69 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 8.91 Total: 4.34 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -7.93 Total: -127.14 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.05 Total: -14.32 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -72.95 3.08 -69.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282859429.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.230 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds