Wall clock time and date at job start Wed Apr 1 2020 04:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 C 1.52995 * 109.46559 * 119.99685 * 2 1 3 5 5 H 1.08999 * 109.47409 * 299.99620 * 4 2 1 6 6 C 1.53005 * 109.47474 * 60.00211 * 4 2 1 7 7 C 1.52999 * 109.47395 * 184.99843 * 6 4 2 8 8 N 1.46494 * 109.46987 * 180.02562 * 7 6 4 9 9 C 1.34776 * 119.99909 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99943 * 359.97438 * 9 8 7 11 11 C 1.50700 * 120.00308 * 179.97438 * 9 8 7 12 12 H 1.09000 * 109.63126 * 60.39461 * 11 9 8 13 13 C 1.53299 * 109.63530 * 180.99462 * 11 9 8 14 14 C 1.52816 * 108.51699 * 189.47263 * 13 11 9 15 15 C 1.50445 * 110.43898 * 308.92222 * 14 13 11 16 16 N 1.32888 * 118.53231 * 197.47425 * 15 14 13 17 17 C 1.31604 * 121.06128 * 180.55812 * 16 15 14 18 18 N 1.31816 * 121.66999 * 359.97100 * 17 16 15 19 19 C 1.32184 * 120.64394 * 359.90134 * 18 17 16 20 20 C 1.37774 * 122.57560 * 17.80195 * 15 14 13 21 21 C 1.50338 * 122.80388 * 359.29594 * 20 15 14 22 22 N 1.46504 * 109.47009 * 179.97438 * 4 2 1 23 23 C 1.36943 * 119.99781 * 85.00152 * 22 4 2 24 24 H 1.08002 * 119.99788 * 359.97438 * 23 22 4 25 25 C 1.38811 * 119.99622 * 180.27904 * 23 22 4 26 26 N 1.31614 * 120.00467 * 359.72375 * 25 23 22 27 27 Si 1.86801 * 119.99700 * 179.72266 * 25 23 22 28 28 H 1.48496 * 109.47031 * 59.99836 * 27 25 23 29 29 H 1.48497 * 109.47267 * 179.97438 * 27 25 23 30 30 H 1.48504 * 109.47169 * 300.00118 * 27 25 23 31 31 H 1.08999 * 109.46950 * 300.00414 * 1 2 3 32 32 H 1.09002 * 109.46651 * 59.99724 * 1 2 3 33 33 H 1.08995 * 109.47501 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46950 * 239.99586 * 2 1 3 35 35 H 1.08998 * 109.46912 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.46865 * 299.99520 * 3 2 1 37 37 H 1.08998 * 109.47169 * 59.99574 * 3 2 1 38 38 H 1.09000 * 109.46874 * 304.99546 * 6 4 2 39 39 H 1.08991 * 109.47156 * 64.99306 * 6 4 2 40 40 H 1.09000 * 109.46867 * 299.99707 * 7 6 4 41 41 H 1.09000 * 109.47154 * 59.99574 * 7 6 4 42 42 H 0.96996 * 120.00425 * 359.97438 * 8 7 6 43 43 H 1.09004 * 109.62960 * 309.17578 * 13 11 9 44 44 H 1.09001 * 109.63376 * 69.76208 * 13 11 9 45 45 H 1.08997 * 109.31062 * 188.62992 * 14 13 11 46 46 H 1.08993 * 109.14875 * 69.11558 * 14 13 11 47 47 H 1.07997 * 119.16625 * 179.97438 * 17 16 15 48 48 H 1.08006 * 120.36473 * 180.02562 * 19 18 17 49 49 H 1.09006 * 109.30286 * 257.26390 * 21 20 15 50 50 H 1.09005 * 109.30476 * 137.87120 * 21 20 15 51 51 H 0.97000 * 120.00410 * 265.00478 * 22 4 2 52 52 H 0.96995 * 120.00147 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 1.5299 -2.1637 1.2494 7 6 1.9346 -2.8477 2.5568 8 7 1.4468 -4.2291 2.5565 9 6 1.6868 -5.0287 3.6146 10 8 2.3070 -4.6047 4.5667 11 6 1.1845 -6.4495 3.6146 12 1 1.6234 -6.9931 2.7780 13 6 1.5661 -7.1307 4.9339 14 6 1.2596 -8.6231 4.8159 15 6 -0.1496 -8.8335 4.3328 16 7 -0.7070 -10.0279 4.5022 17 6 -1.9328 -10.2699 4.0888 18 7 -2.6576 -9.3442 3.4928 19 6 -2.1699 -8.1320 3.2923 20 6 -0.8790 -7.8397 3.7176 21 6 -0.3385 -6.4556 3.4886 22 7 3.5050 -0.7218 1.2491 23 6 4.1901 0.3529 1.7500 24 1 3.6505 1.2010 2.1448 25 6 5.5782 0.3548 1.7445 26 7 6.2359 -0.6785 1.2628 27 14 6.5129 1.8240 2.4207 28 1 6.1594 2.0205 3.8495 29 1 7.9727 1.5796 2.3015 30 1 6.1493 3.0397 1.6492 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 3.1301 1.4425 -0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6767 1.9564 0.8899 38 1 0.4436 -2.1650 1.1598 39 1 1.9645 -2.7028 0.4076 40 1 3.0209 -2.8464 2.6464 41 1 1.5000 -2.3086 3.3985 42 1 0.9504 -4.5680 1.7952 43 1 2.6299 -6.9894 5.1247 44 1 0.9846 -6.7009 5.7496 45 1 1.3802 -9.0941 5.7914 46 1 1.9544 -9.0760 4.1086 47 1 -2.3556 -11.2518 4.2419 48 1 -2.7679 -7.3769 2.8038 49 1 -0.7641 -5.7759 4.2270 50 1 -0.6190 -6.1198 2.4902 51 1 3.9897 -1.4833 0.8941 52 1 7.2058 -0.6773 1.2593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283449526.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:01 Heat of formation + Delta-G solvation = -7.129505 kcal Electronic energy + Delta-G solvation = -30173.054579 eV Core-core repulsion = 26171.617303 eV Total energy + Delta-G solvation = -4001.437276 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.74784 -39.89568 -37.62592 -36.86671 -34.77427 -34.42014 -33.06480 -31.81966 -31.45190 -30.52700 -29.33986 -26.47191 -25.85986 -25.21531 -24.31109 -23.39823 -22.92953 -21.41692 -21.07603 -19.88769 -19.18988 -18.16850 -17.35711 -17.18478 -16.92863 -15.96472 -15.56767 -15.44609 -15.09381 -14.66084 -14.44083 -14.26195 -14.18868 -13.96560 -13.86807 -13.70351 -13.49498 -13.34070 -13.15463 -12.79401 -12.42560 -12.13831 -12.02667 -11.70124 -11.64571 -11.51234 -11.30117 -11.21944 -11.15196 -10.91173 -10.78465 -10.74424 -10.61380 -10.45433 -10.28265 -10.07599 -9.98676 -9.63878 -9.60214 -9.53691 -9.45805 -8.88887 -8.80797 -6.94014 -5.75383 -3.03012 0.51131 0.66647 2.67401 3.21435 3.36105 3.44749 3.50059 3.50371 3.62862 3.82112 4.04177 4.14828 4.23793 4.45263 4.60236 4.65068 4.86371 4.90310 5.03807 5.06037 5.14557 5.20251 5.20697 5.34255 5.39903 5.46202 5.48634 5.54327 5.64439 5.69337 5.69740 5.79825 5.89153 5.93224 5.99005 6.06357 6.14552 6.20851 6.25127 6.37685 6.40003 6.53439 6.60536 6.64020 6.68673 6.70536 6.81339 7.10809 7.31974 7.58711 7.71070 7.72221 8.30880 8.42881 9.54320 10.10776 10.45434 11.47024 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015331 B = 0.002146 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.961362 B =13046.730496 C =14545.474168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.121 3.879 8 N -0.727 5.727 9 C 0.514 3.486 10 O -0.532 6.532 11 C -0.109 4.109 12 H 0.102 0.898 13 C -0.100 4.100 14 C -0.075 4.075 15 C 0.183 3.817 16 N -0.522 5.522 17 C 0.289 3.711 18 N -0.523 5.523 19 C 0.151 3.849 20 C -0.178 4.178 21 C -0.063 4.063 22 N -0.721 5.721 23 C -0.232 4.232 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.901 3.099 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.395 0.605 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.195 0.805 48 H 0.169 0.831 49 H 0.090 0.910 50 H 0.087 0.913 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.512 -15.787 1.600 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C -0.001 4.001 8 N -0.378 5.378 9 C 0.299 3.701 10 O -0.408 6.408 11 C -0.131 4.131 12 H 0.120 0.880 13 C -0.138 4.138 14 C -0.112 4.112 15 C 0.039 3.961 16 N -0.235 5.235 17 C 0.001 3.999 18 N -0.237 5.237 19 C -0.016 4.016 20 C -0.182 4.182 21 C -0.102 4.102 22 N -0.362 5.362 23 C -0.363 4.363 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.733 3.267 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.228 0.772 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.114 0.886 46 H 0.112 0.888 47 H 0.212 0.788 48 H 0.186 0.814 49 H 0.108 0.892 50 H 0.106 0.894 51 H 0.217 0.783 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.349 -16.230 2.537 23.892 hybrid contribution 0.696 1.186 -0.444 1.445 sum -16.654 -15.043 2.092 22.539 Atomic orbital electron populations 1.21936 0.97161 1.00581 1.00751 1.21779 0.93252 0.97744 1.00492 1.21831 1.04275 0.94851 0.98820 1.20183 0.86042 0.91085 0.95216 0.93339 1.22127 1.00418 0.98284 0.96586 1.21463 1.01285 0.79291 0.98083 1.46147 1.57677 1.13979 1.20010 1.20344 0.79981 0.87049 0.82776 1.90753 1.39987 1.75527 1.34497 1.21380 0.95967 0.94453 1.01257 0.87980 1.21437 1.03946 0.92413 0.96050 1.20508 0.89914 0.97668 1.03130 1.21429 0.96494 0.87918 0.90279 1.68417 1.13368 1.21968 1.19785 1.24914 0.86511 0.98826 0.89685 1.68422 1.38003 1.02159 1.15102 1.23306 0.91986 0.93692 0.92598 1.21110 0.96872 0.98231 1.02015 1.20300 0.93912 0.92431 1.03549 1.42434 0.98898 1.21075 1.73762 1.19140 0.88770 0.96247 1.32151 0.91103 1.24707 0.96499 0.97717 1.01984 1.69632 1.06874 1.29852 1.51672 0.86354 0.79129 0.82384 0.78868 1.21307 1.21821 1.21344 0.93298 0.93838 0.93237 0.92227 0.89495 0.95235 0.94126 0.91581 0.91694 0.89723 0.91887 0.77162 0.89025 0.90637 0.88611 0.88820 0.78827 0.81374 0.89208 0.89422 0.78323 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 8.85 37.16 0.33 -1.57 16 2 C -0.11 -1.82 2.69 -90.62 -0.24 -2.06 16 3 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 4 C 0.19 3.31 2.02 -67.93 -0.14 3.17 16 5 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 6 C -0.14 -1.90 4.65 -26.73 -0.12 -2.02 16 7 C 0.12 1.85 5.56 -4.04 -0.02 1.83 16 8 N -0.73 -8.44 5.46 -60.30 -0.33 -8.77 16 9 C 0.51 6.52 7.14 -10.99 -0.08 6.44 16 10 O -0.53 -9.36 15.84 5.55 0.09 -9.27 16 11 C -0.11 -0.93 2.55 -91.71 -0.23 -1.17 16 12 H 0.10 0.75 8.11 -51.93 -0.42 0.33 16 13 C -0.10 -0.89 4.71 -26.67 -0.13 -1.01 16 14 C -0.07 -0.57 5.96 -28.10 -0.17 -0.74 16 15 C 0.18 1.63 6.62 -82.43 -0.55 1.09 16 16 N -0.52 -5.08 10.32 -11.00 -0.11 -5.19 16 17 C 0.29 2.49 12.29 -92.30 -1.13 1.36 16 18 N -0.52 -4.79 10.44 -14.54 -0.15 -4.94 16 19 C 0.15 1.15 10.94 -17.11 -0.19 0.97 16 20 C -0.18 -1.39 5.73 -104.67 -0.60 -1.99 16 21 C -0.06 -0.42 4.87 -28.15 -0.14 -0.56 16 22 N -0.72 -16.53 4.45 -53.42 -0.24 -16.77 16 23 C -0.23 -6.03 7.57 -15.06 -0.11 -6.15 16 24 H 0.07 1.81 7.39 -52.49 -0.39 1.42 16 25 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 26 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 27 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.56 6.32 -51.93 -0.33 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 36 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.75 6.17 -51.93 -0.32 0.43 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.66 7.75 -51.93 -0.40 1.26 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.40 3.24 8.09 -40.82 -0.33 2.91 16 43 H 0.09 0.91 7.80 -51.93 -0.41 0.51 16 44 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 49 H 0.09 0.63 8.11 -51.93 -0.42 0.21 16 50 H 0.09 0.40 7.83 -51.93 -0.41 0.00 16 51 H 0.38 9.51 7.80 -40.82 -0.32 9.19 16 52 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 411.64 15.07 6.20 6.20 Total: -1.00 -32.87 411.64 -10.83 -43.70 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.68 Total: 9.71 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -3.31 Total: -5.08 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.11 Total: -62.36 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.87 -10.83 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283449526.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.571 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds