Wall clock time and date at job start Wed Apr 1 2020 04:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47416 * 2 1 4 4 C 1.53000 * 109.47260 * 120.00424 * 2 1 3 5 5 H 1.08999 * 109.46803 * 299.99759 * 4 2 1 6 6 C 1.53001 * 109.46848 * 59.99792 * 4 2 1 7 7 C 1.53001 * 109.46972 * 185.00299 * 6 4 2 8 8 N 1.46495 * 109.47622 * 179.97438 * 7 6 4 9 9 C 1.34772 * 120.00275 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99892 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00038 * 180.02562 * 9 8 7 12 12 H 1.09008 * 109.62899 * 299.60613 * 11 9 8 13 13 C 1.53304 * 109.63737 * 179.00753 * 11 9 8 14 14 C 1.52809 * 108.51823 * 170.52327 * 13 11 9 15 15 C 1.50452 * 110.43702 * 51.07943 * 14 13 11 16 16 N 1.32890 * 118.52875 * 162.52171 * 15 14 13 17 17 C 1.31602 * 121.06074 * 179.44335 * 16 15 14 18 18 N 1.31812 * 121.66667 * 359.97438 * 17 16 15 19 19 C 1.32187 * 120.64723 * 0.18555 * 18 17 16 20 20 C 1.37762 * 122.57668 * 342.19222 * 15 14 13 21 21 C 1.50336 * 122.80838 * 0.70955 * 20 15 14 22 22 N 1.46496 * 109.47071 * 179.97438 * 4 2 1 23 23 C 1.36945 * 119.99718 * 85.00073 * 22 4 2 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 4 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 4 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.08996 * 109.46521 * 299.99940 * 1 2 3 32 32 H 1.09005 * 109.46989 * 59.99468 * 1 2 3 33 33 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46919 * 240.00513 * 2 1 3 35 35 H 1.08992 * 109.47375 * 180.02562 * 3 2 1 36 36 H 1.09009 * 109.47234 * 300.00692 * 3 2 1 37 37 H 1.08999 * 109.46985 * 60.00034 * 3 2 1 38 38 H 1.09000 * 109.47282 * 304.99563 * 6 4 2 39 39 H 1.09001 * 109.47318 * 65.00222 * 6 4 2 40 40 H 1.09001 * 109.47013 * 300.00315 * 7 6 4 41 41 H 1.09001 * 109.47162 * 59.99828 * 7 6 4 42 42 H 0.97003 * 119.99495 * 0.02562 * 8 7 6 43 43 H 1.09000 * 109.62694 * 290.23809 * 13 11 9 44 44 H 1.09005 * 109.62785 * 50.81465 * 13 11 9 45 45 H 1.08995 * 109.31139 * 290.78559 * 14 13 11 46 46 H 1.09000 * 109.15232 * 171.27008 * 14 13 11 47 47 H 1.08001 * 119.16597 * 180.02562 * 17 16 15 48 48 H 1.07998 * 120.36405 * 179.97438 * 19 18 17 49 49 H 1.09004 * 109.30979 * 222.13540 * 21 20 15 50 50 H 1.09001 * 109.31206 * 102.72925 * 21 20 15 51 51 H 0.96996 * 120.00499 * 264.99803 * 22 4 2 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9348 -2.8480 2.5564 8 7 1.4459 -4.2289 2.5567 9 6 1.6867 -5.0288 3.6143 10 8 2.3077 -4.6052 4.5660 11 6 1.1843 -6.4496 3.6143 12 1 0.0973 -6.4537 3.5322 13 6 1.6096 -7.1465 4.9118 14 6 0.8947 -8.4945 4.9956 15 6 1.0859 -9.2706 3.7210 16 7 0.8482 -10.5780 3.7323 17 6 0.9889 -11.3032 2.6431 18 7 1.3691 -10.7683 1.5000 19 6 1.6263 -9.4745 1.4140 20 6 1.4905 -8.6778 2.5451 21 6 1.7911 -7.2089 2.4348 22 7 3.5051 -0.7218 1.2488 23 6 4.1902 0.3528 1.7498 24 1 3.6505 1.2008 2.1448 25 6 5.5783 0.3522 1.7500 26 7 6.2360 -0.6812 1.2682 27 14 6.5129 1.8184 2.4327 28 1 7.9727 1.5715 2.3190 29 1 6.1548 3.0361 1.6621 30 1 6.1541 2.0129 3.8605 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 0.4437 -2.1651 1.1596 39 1 1.9646 -2.7028 0.4072 40 1 3.0211 -2.8466 2.6460 41 1 1.5002 -2.3089 3.3982 42 1 0.9496 -4.5678 1.7952 43 1 2.6882 -7.3036 4.9065 44 1 1.3307 -6.5304 5.7667 45 1 -0.1698 -8.3283 5.1601 46 1 1.3036 -9.0649 5.8296 47 1 0.7871 -12.3633 2.6869 48 1 1.9379 -9.0411 0.4751 49 1 1.3725 -6.8241 1.5048 50 1 2.8711 -7.0615 2.4287 51 1 3.9898 -1.4833 0.8938 52 1 7.2060 -0.6814 1.2680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283449527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:06 Heat of formation + Delta-G solvation = -7.176094 kcal Electronic energy + Delta-G solvation = -30225.045376 eV Core-core repulsion = 26223.606079 eV Total energy + Delta-G solvation = -4001.439297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.71602 -39.88922 -37.62307 -36.85250 -34.77158 -34.38688 -33.06607 -31.79683 -31.44351 -30.51441 -29.33577 -26.46824 -25.84406 -25.20196 -24.29435 -23.36448 -22.92915 -21.40530 -21.07579 -19.87488 -19.19501 -18.14163 -17.32220 -17.16367 -16.94435 -15.93461 -15.58706 -15.41751 -15.08988 -14.63271 -14.42410 -14.23435 -14.15821 -13.97825 -13.80946 -13.68770 -13.55281 -13.31317 -13.14277 -12.77292 -12.42388 -12.12170 -12.02290 -11.72152 -11.64696 -11.47567 -11.30684 -11.19326 -11.13506 -10.91206 -10.78621 -10.71912 -10.61422 -10.45417 -10.28256 -10.07679 -9.98613 -9.62908 -9.56692 -9.50934 -9.45922 -8.88874 -8.80893 -6.94110 -5.75667 -3.03237 0.54938 0.70018 2.67223 3.22100 3.39629 3.44649 3.49965 3.50298 3.65151 3.86175 4.07469 4.17769 4.27153 4.46790 4.60116 4.66811 4.88931 4.92924 5.03644 5.08277 5.17129 5.20743 5.23913 5.34340 5.42396 5.46386 5.51208 5.55213 5.66464 5.69152 5.70249 5.79213 5.89129 5.95237 5.99271 6.09156 6.14615 6.20902 6.25114 6.37778 6.39946 6.53459 6.63804 6.64005 6.68654 6.70544 6.81320 7.10746 7.31983 7.58752 7.72144 7.74415 8.30937 8.42697 9.54169 10.10557 10.45240 11.46752 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.002186 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.842069 B =12806.880777 C =13590.566213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.141 4.141 4 C 0.186 3.814 5 H 0.049 0.951 6 C -0.136 4.136 7 C 0.121 3.879 8 N -0.727 5.727 9 C 0.513 3.487 10 O -0.532 6.532 11 C -0.108 4.108 12 H 0.100 0.900 13 C -0.101 4.101 14 C -0.073 4.073 15 C 0.181 3.819 16 N -0.522 5.522 17 C 0.288 3.712 18 N -0.523 5.523 19 C 0.152 3.848 20 C -0.177 4.177 21 C -0.065 4.065 22 N -0.721 5.721 23 C -0.232 4.232 24 H 0.071 0.929 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.901 3.099 28 H -0.292 1.292 29 H -0.287 1.287 30 H -0.286 1.286 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.029 0.971 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.395 0.605 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.195 0.805 48 H 0.170 0.830 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.383 0.617 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.432 -16.500 0.528 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.075 3.925 5 H 0.067 0.933 6 C -0.174 4.174 7 C -0.001 4.001 8 N -0.378 5.378 9 C 0.298 3.702 10 O -0.408 6.408 11 C -0.129 4.129 12 H 0.119 0.881 13 C -0.139 4.139 14 C -0.111 4.111 15 C 0.037 3.963 16 N -0.236 5.236 17 C 0.000 4.000 18 N -0.236 5.236 19 C -0.015 4.015 20 C -0.181 4.181 21 C -0.104 4.104 22 N -0.361 5.361 23 C -0.363 4.363 24 H 0.089 0.911 25 C -0.209 4.209 26 N -0.581 5.581 27 Si 0.732 3.268 28 H -0.218 1.218 29 H -0.213 1.213 30 H -0.213 1.213 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.228 0.772 43 H 0.095 0.905 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.113 0.887 47 H 0.212 0.788 48 H 0.187 0.813 49 H 0.106 0.894 50 H 0.111 0.889 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.075 -17.013 1.369 22.772 hybrid contribution 0.646 1.209 -0.403 1.429 sum -14.428 -15.804 0.966 21.421 Atomic orbital electron populations 1.21936 0.97166 1.00586 1.00752 1.21778 0.93247 0.97745 1.00485 1.21831 1.04274 0.94852 0.98821 1.20182 0.86037 0.91089 0.95221 0.93344 1.22128 1.00429 0.98282 0.96571 1.21465 1.01249 0.79316 0.98098 1.46149 1.57661 1.13984 1.20027 1.20353 0.79996 0.87033 0.82796 1.90751 1.39784 1.75741 1.34486 1.21372 1.02026 0.92345 0.97190 0.88143 1.21442 1.01350 0.94063 0.97037 1.20493 1.02458 0.94900 0.93251 1.21406 0.89987 0.89979 0.94913 1.68407 1.16760 1.06675 1.31743 1.24906 0.91150 1.00786 0.83163 1.68425 1.13241 1.13196 1.28751 1.23331 0.91019 0.88939 0.98227 1.21111 1.03149 0.98492 0.95337 1.20318 1.02694 0.88971 0.98405 1.42427 0.98890 1.21066 1.73764 1.19140 0.88772 0.96246 1.32136 0.91106 1.24703 0.96491 0.97703 1.01980 1.69637 1.06867 1.29873 1.51678 0.86356 0.79132 0.82364 0.78901 1.21820 1.21337 1.21311 0.93292 0.93842 0.93240 0.92226 0.89487 0.95237 0.94130 0.91592 0.91682 0.89702 0.91912 0.77162 0.90493 0.89164 0.88942 0.88658 0.78845 0.81288 0.89375 0.88948 0.78330 0.93553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.85 37.16 0.33 -1.58 16 2 C -0.11 -1.82 2.69 -90.62 -0.24 -2.06 16 3 C -0.14 -2.52 8.26 37.16 0.31 -2.21 16 4 C 0.19 3.30 2.02 -67.93 -0.14 3.17 16 5 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 6 C -0.14 -1.89 4.65 -26.73 -0.12 -2.02 16 7 C 0.12 1.85 5.56 -4.04 -0.02 1.83 16 8 N -0.73 -8.44 5.46 -60.30 -0.33 -8.76 16 9 C 0.51 6.51 7.14 -10.99 -0.08 6.44 16 10 O -0.53 -9.36 15.84 5.56 0.09 -9.28 16 11 C -0.11 -0.92 2.55 -91.70 -0.23 -1.16 16 12 H 0.10 0.68 8.11 -51.92 -0.42 0.26 16 13 C -0.10 -0.89 4.71 -26.67 -0.13 -1.02 16 14 C -0.07 -0.56 5.96 -28.10 -0.17 -0.73 16 15 C 0.18 1.67 6.62 -82.43 -0.55 1.12 16 16 N -0.52 -5.21 10.32 -11.00 -0.11 -5.32 16 17 C 0.29 2.59 12.29 -92.30 -1.13 1.46 16 18 N -0.52 -5.07 10.44 -14.54 -0.15 -5.22 16 19 C 0.15 1.27 10.94 -17.11 -0.19 1.08 16 20 C -0.18 -1.48 5.73 -104.68 -0.60 -2.08 16 21 C -0.07 -0.49 4.87 -28.15 -0.14 -0.62 16 22 N -0.72 -16.47 4.45 -53.43 -0.24 -16.71 16 23 C -0.23 -6.02 7.57 -15.06 -0.11 -6.13 16 24 H 0.07 1.81 7.39 -52.49 -0.39 1.42 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 26 N -0.93 -27.36 13.06 55.49 0.72 -26.64 16 27 Si 0.90 22.11 29.55 -169.99 -5.02 17.08 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.56 6.32 -51.93 -0.33 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.87 6.01 -51.93 -0.31 1.56 16 36 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.76 6.17 -51.93 -0.32 0.44 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.65 7.75 -51.93 -0.40 1.25 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.40 3.24 8.09 -40.82 -0.33 2.91 16 43 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.09 0.86 7.80 -51.93 -0.41 0.45 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.20 1.14 8.06 -52.49 -0.42 0.71 16 48 H 0.17 0.96 8.06 -52.49 -0.42 0.54 16 49 H 0.09 0.47 7.83 -51.93 -0.41 0.07 16 50 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 51 H 0.38 9.46 7.80 -40.82 -0.32 9.14 16 52 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 411.64 15.07 6.20 6.20 Total: -1.00 -32.77 411.64 -10.83 -43.60 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -8.68 Total: 10.00 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -3.31 Total: -4.96 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -0.11 Total: -62.65 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.77 -10.83 -43.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283449527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.429 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds