Wall clock time and date at job start Wed Apr 1 2020 04:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47416 * 2 1 4 4 C 1.53000 * 109.47260 * 120.00424 * 2 1 3 5 5 H 1.08999 * 109.46803 * 299.99759 * 4 2 1 6 6 C 1.53001 * 109.46848 * 59.99792 * 4 2 1 7 7 C 1.53001 * 109.46972 * 185.00299 * 6 4 2 8 8 N 1.46495 * 109.47622 * 179.97438 * 7 6 4 9 9 C 1.34772 * 120.00275 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99892 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00038 * 180.02562 * 9 8 7 12 12 H 1.09008 * 109.62899 * 299.60613 * 11 9 8 13 13 C 1.53304 * 109.63737 * 179.00753 * 11 9 8 14 14 C 1.52809 * 108.51823 * 170.52327 * 13 11 9 15 15 C 1.50452 * 110.43702 * 51.07943 * 14 13 11 16 16 N 1.32890 * 118.52875 * 162.52171 * 15 14 13 17 17 C 1.31602 * 121.06074 * 179.44335 * 16 15 14 18 18 N 1.31812 * 121.66667 * 359.97438 * 17 16 15 19 19 C 1.32187 * 120.64723 * 0.18555 * 18 17 16 20 20 C 1.37762 * 122.57668 * 342.19222 * 15 14 13 21 21 C 1.50336 * 122.80838 * 0.70955 * 20 15 14 22 22 N 1.46496 * 109.47071 * 179.97438 * 4 2 1 23 23 C 1.36945 * 119.99718 * 85.00073 * 22 4 2 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 4 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 4 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47187 * 179.97438 * 27 25 23 29 29 H 1.48494 * 109.47141 * 300.00154 * 27 25 23 30 30 H 1.48498 * 109.47018 * 60.00200 * 27 25 23 31 31 H 1.08996 * 109.46521 * 299.99940 * 1 2 3 32 32 H 1.09005 * 109.46989 * 59.99468 * 1 2 3 33 33 H 1.08995 * 109.46903 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46919 * 240.00513 * 2 1 3 35 35 H 1.08992 * 109.47375 * 180.02562 * 3 2 1 36 36 H 1.09009 * 109.47234 * 300.00692 * 3 2 1 37 37 H 1.08999 * 109.46985 * 60.00034 * 3 2 1 38 38 H 1.09000 * 109.47282 * 304.99563 * 6 4 2 39 39 H 1.09001 * 109.47318 * 65.00222 * 6 4 2 40 40 H 1.09001 * 109.47013 * 300.00315 * 7 6 4 41 41 H 1.09001 * 109.47162 * 59.99828 * 7 6 4 42 42 H 0.97003 * 119.99495 * 0.02562 * 8 7 6 43 43 H 1.09000 * 109.62694 * 290.23809 * 13 11 9 44 44 H 1.09005 * 109.62785 * 50.81465 * 13 11 9 45 45 H 1.08995 * 109.31139 * 290.78559 * 14 13 11 46 46 H 1.09000 * 109.15232 * 171.27008 * 14 13 11 47 47 H 1.08001 * 119.16597 * 180.02562 * 17 16 15 48 48 H 1.07998 * 120.36405 * 179.97438 * 19 18 17 49 49 H 1.09004 * 109.30979 * 222.13540 * 21 20 15 50 50 H 1.09001 * 109.31206 * 102.72925 * 21 20 15 51 51 H 0.96996 * 120.00499 * 264.99803 * 22 4 2 52 52 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1392 6 6 1.5300 -2.1638 1.2490 7 6 1.9348 -2.8480 2.5564 8 7 1.4459 -4.2289 2.5567 9 6 1.6867 -5.0288 3.6143 10 8 2.3077 -4.6052 4.5660 11 6 1.1843 -6.4496 3.6143 12 1 0.0973 -6.4537 3.5322 13 6 1.6096 -7.1465 4.9118 14 6 0.8947 -8.4945 4.9956 15 6 1.0859 -9.2706 3.7210 16 7 0.8482 -10.5780 3.7323 17 6 0.9889 -11.3032 2.6431 18 7 1.3691 -10.7683 1.5000 19 6 1.6263 -9.4745 1.4140 20 6 1.4905 -8.6778 2.5451 21 6 1.7911 -7.2089 2.4348 22 7 3.5051 -0.7218 1.2488 23 6 4.1902 0.3528 1.7498 24 1 3.6505 1.2008 2.1448 25 6 5.5783 0.3522 1.7500 26 7 6.2360 -0.6812 1.2682 27 14 6.5129 1.8184 2.4327 28 1 7.9727 1.5715 2.3190 29 1 6.1548 3.0361 1.6621 30 1 6.1541 2.0129 3.8605 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 0.4437 -2.1651 1.1596 39 1 1.9646 -2.7028 0.4072 40 1 3.0211 -2.8466 2.6460 41 1 1.5002 -2.3089 3.3982 42 1 0.9496 -4.5678 1.7952 43 1 2.6882 -7.3036 4.9065 44 1 1.3307 -6.5304 5.7667 45 1 -0.1698 -8.3283 5.1601 46 1 1.3036 -9.0649 5.8296 47 1 0.7871 -12.3633 2.6869 48 1 1.9379 -9.0411 0.4751 49 1 1.3725 -6.8241 1.5048 50 1 2.8711 -7.0615 2.4287 51 1 3.9898 -1.4833 0.8938 52 1 7.2060 -0.6814 1.2680 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283449527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:05 Heat of formation + Delta-G solvation = -28.002389 kcal Electronic energy + Delta-G solvation = -30225.948472 eV Core-core repulsion = 26223.606079 eV Total energy + Delta-G solvation = -4002.342393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.37756 -40.90054 -38.99626 -37.69201 -35.98599 -35.06226 -34.88088 -32.78338 -32.42581 -31.67938 -30.69628 -27.71688 -27.03316 -26.17868 -25.28103 -24.49691 -23.99392 -22.53218 -22.15740 -20.81482 -20.52988 -19.12110 -18.83648 -17.99714 -17.75996 -17.00437 -16.91981 -16.47009 -16.15547 -15.80577 -15.48716 -15.31061 -15.25235 -14.96664 -14.91095 -14.77134 -14.65656 -14.32649 -14.30553 -13.91654 -13.49209 -13.25685 -13.06877 -12.89051 -12.85624 -12.82745 -12.64936 -12.46000 -12.22079 -12.14440 -12.01460 -11.95004 -11.87430 -11.84383 -11.66492 -11.38304 -11.35653 -11.16785 -10.83619 -10.66811 -10.20672 -10.17266 -10.02450 -8.87919 -7.87146 -5.10981 -0.08367 0.05590 1.46732 1.48404 1.53376 1.65728 2.22266 2.60071 2.75082 3.03147 3.28058 3.44670 3.46143 3.48130 3.62203 3.77667 3.95731 3.98441 3.98914 4.19265 4.25079 4.27858 4.32093 4.37157 4.45304 4.47049 4.56293 4.57038 4.66218 4.72824 4.82132 4.84797 4.86204 4.90185 4.99830 5.05225 5.07956 5.10487 5.20528 5.24175 5.27742 5.31206 5.40543 5.47694 5.47917 5.54035 5.59841 5.73759 5.82455 6.00162 6.35909 6.63683 7.10209 7.33949 7.42657 8.20687 8.41863 9.36285 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.002186 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.842069 B =12806.880777 C =13590.566213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C -0.139 4.139 4 C 0.178 3.822 5 H 0.037 0.963 6 C -0.119 4.119 7 C 0.133 3.867 8 N -0.711 5.711 9 C 0.511 3.489 10 O -0.587 6.587 11 C -0.095 4.095 12 H 0.131 0.869 13 C -0.098 4.098 14 C -0.064 4.064 15 C 0.168 3.832 16 N -0.540 5.540 17 C 0.280 3.720 18 N -0.541 5.541 19 C 0.149 3.851 20 C -0.178 4.178 21 C -0.060 4.060 22 N -0.729 5.729 23 C -0.210 4.210 24 H 0.073 0.927 25 C -0.079 4.079 26 N -0.970 5.970 27 Si 0.954 3.046 28 H -0.301 1.301 29 H -0.279 1.279 30 H -0.285 1.285 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.047 0.953 42 H 0.417 0.583 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.218 0.782 48 H 0.195 0.805 49 H 0.117 0.883 50 H 0.079 0.921 51 H 0.372 0.628 52 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.603 -17.076 -0.722 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.196 4.196 4 C 0.069 3.931 5 H 0.055 0.945 6 C -0.157 4.157 7 C 0.009 3.991 8 N -0.363 5.363 9 C 0.298 3.702 10 O -0.467 6.467 11 C -0.116 4.116 12 H 0.149 0.851 13 C -0.137 4.137 14 C -0.102 4.102 15 C 0.024 3.976 16 N -0.255 5.255 17 C -0.007 4.007 18 N -0.255 5.255 19 C -0.018 4.018 20 C -0.182 4.182 21 C -0.098 4.098 22 N -0.369 5.369 23 C -0.342 4.342 24 H 0.091 0.909 25 C -0.271 4.271 26 N -0.622 5.622 27 Si 0.785 3.215 28 H -0.228 1.228 29 H -0.205 1.205 30 H -0.211 1.211 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.254 0.746 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.127 0.873 46 H 0.114 0.886 47 H 0.234 0.766 48 H 0.211 0.789 49 H 0.136 0.864 50 H 0.097 0.903 51 H 0.204 0.796 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -18.329 -17.583 0.087 25.399 hybrid contribution 1.545 1.392 -0.007 2.080 sum -16.784 -16.191 0.081 23.321 Atomic orbital electron populations 1.21853 0.93659 1.02494 1.01597 1.21642 0.96060 0.96072 0.98885 1.21771 1.01500 0.96535 0.99837 1.20457 0.83124 0.93940 0.95596 0.94467 1.21991 1.02619 0.95325 0.95814 1.21069 0.98200 0.81400 0.98454 1.45914 1.57199 1.12458 1.20694 1.21101 0.78766 0.88437 0.81853 1.90734 1.42283 1.77056 1.36656 1.21338 1.03586 0.89175 0.97512 0.85102 1.21368 1.00368 0.94803 0.97116 1.20432 1.03206 0.93724 0.92831 1.21671 0.90175 0.90111 0.95627 1.68436 1.17632 1.07108 1.32280 1.25409 0.90599 1.01834 0.82860 1.68488 1.13973 1.13923 1.29095 1.23775 0.90167 0.88641 0.99174 1.21136 1.03134 0.98723 0.95163 1.20305 1.01993 0.88466 0.99042 1.42600 1.01186 1.19744 1.73342 1.19428 0.88896 0.96514 1.29387 0.90913 1.25344 0.97662 1.00018 1.04054 1.69778 1.06236 1.31721 1.54428 0.85481 0.77445 0.80233 0.78336 1.22777 1.20486 1.21150 0.92990 0.92525 0.90815 0.92741 0.93652 0.93216 0.94136 0.87592 0.90841 0.94635 0.93416 0.74567 0.92425 0.90027 0.87257 0.88612 0.76621 0.78862 0.86437 0.90265 0.79637 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.85 71.98 0.64 -2.37 16 2 C -0.11 -3.21 2.69 -10.79 -0.03 -3.24 16 3 C -0.14 -4.82 8.26 71.98 0.59 -4.22 16 4 C 0.18 6.13 2.02 44.99 0.09 6.23 16 5 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 6 C -0.12 -3.05 4.65 30.59 0.14 -2.91 16 7 C 0.13 4.00 5.56 86.38 0.48 4.48 16 8 N -0.71 -15.20 5.46 -463.08 -2.53 -17.73 16 9 C 0.51 12.59 7.14 87.66 0.63 13.21 16 10 O -0.59 -21.33 15.84 -3.02 -0.05 -21.38 16 11 C -0.09 -1.45 2.55 -11.49 -0.03 -1.47 16 12 H 0.13 1.28 8.11 -2.38 -0.02 1.26 16 13 C -0.10 -1.69 4.71 30.63 0.14 -1.55 16 14 C -0.06 -0.90 5.96 29.71 0.18 -0.72 16 15 C 0.17 2.83 6.62 42.21 0.28 3.11 16 16 N -0.54 -10.07 10.32 -188.72 -1.95 -12.02 16 17 C 0.28 4.65 12.29 180.94 2.22 6.88 16 18 N -0.54 -9.56 10.44 -199.93 -2.09 -11.65 16 19 C 0.15 2.16 10.94 84.83 0.93 3.08 16 20 C -0.18 -2.61 5.73 -19.90 -0.11 -2.72 16 21 C -0.06 -0.75 4.87 29.68 0.14 -0.61 16 22 N -0.73 -33.89 4.45 -322.95 -1.44 -35.33 16 23 C -0.21 -11.12 7.57 84.03 0.64 -10.49 16 24 H 0.07 3.76 7.39 -2.91 -0.02 3.74 16 25 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 26 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 27 Si 0.95 46.67 29.55 68.60 2.03 48.69 16 28 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 29 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 30 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.07 1.26 6.32 -2.39 -0.02 1.24 16 34 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.04 1.94 6.01 -2.39 -0.01 1.93 16 36 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.93 6.17 -2.39 -0.01 1.91 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.44 7.75 -2.39 -0.02 1.42 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.42 5.27 8.09 -92.71 -0.75 4.52 16 43 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 44 H 0.08 1.56 7.80 -2.38 -0.02 1.54 16 45 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.22 2.21 8.06 -2.91 -0.02 2.19 16 48 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 49 H 0.12 0.79 7.83 -2.38 -0.02 0.77 16 50 H 0.08 1.26 8.11 -2.39 -0.02 1.24 16 51 H 0.37 18.88 7.80 -92.71 -0.72 18.16 16 52 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.62 411.64 1.11 -74.51 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: -0.54 Total: 31.00 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 7.40 Total: 2.66 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -7.72 Total: -135.47 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.69 kcal Total: -75.62 1.11 -74.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283449527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.507 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds