Wall clock time and date at job start Wed Apr 1 2020 04:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50697 * 119.99798 * 2 1 4 4 C 1.53006 * 109.47239 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46961 * 240.00101 * 3 2 1 6 6 C 1.52997 * 109.47466 * 119.99751 * 3 2 1 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 3 2 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 3 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 3 10 10 C 1.48115 * 127.02917 * 179.70654 * 9 7 6 11 11 C 1.54597 * 103.42225 * 219.29102 * 10 9 7 12 12 H 1.08998 * 110.57763 * 81.17356 * 11 10 9 13 13 C 1.50701 * 110.83088 * 204.45216 * 11 10 9 14 14 C 1.39865 * 126.04605 * 53.25349 * 13 11 10 15 15 N 1.30838 * 108.20636 * 179.81602 * 14 13 11 16 16 N 1.40080 * 108.20455 * 0.44102 * 15 14 13 17 17 C 1.46499 * 126.03945 * 179.73814 * 16 15 14 18 18 C 1.34950 * 107.92300 * 359.71620 * 16 15 14 19 19 C 1.54620 * 102.91199 * 322.86927 * 11 10 9 20 20 H 1.09002 * 110.41593 * 262.76555 * 19 11 10 21 21 N 1.46497 * 110.32475 * 140.59010 * 19 11 10 22 22 C 1.36943 * 119.99868 * 157.92638 * 21 19 11 23 23 H 1.08001 * 119.99742 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99760 * 179.97438 * 22 21 19 25 25 N 1.31622 * 119.99563 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00311 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47445 * 89.99702 * 26 24 22 28 28 H 1.48497 * 109.47220 * 209.99828 * 26 24 22 29 29 H 1.48507 * 109.46923 * 329.99651 * 26 24 22 30 30 C 1.47484 * 127.03381 * 0.02996 * 9 7 6 31 31 H 1.08002 * 119.99626 * 179.97438 * 1 2 3 32 32 H 1.07992 * 120.00236 * 0.02562 * 1 2 3 33 33 H 1.08002 * 120.00334 * 179.97438 * 2 1 3 34 34 H 1.08993 * 109.46955 * 180.02562 * 4 3 2 35 35 H 1.09000 * 109.47050 * 300.00336 * 4 3 2 36 36 H 1.09001 * 109.47002 * 60.00070 * 4 3 2 37 37 H 1.09002 * 109.46716 * 299.99650 * 5 3 2 38 38 H 1.09000 * 109.47486 * 59.99568 * 5 3 2 39 39 H 1.09001 * 109.47362 * 180.02562 * 5 3 2 40 40 H 1.09002 * 109.47153 * 59.99773 * 6 3 2 41 41 H 1.09001 * 109.46832 * 299.99964 * 6 3 2 42 42 H 1.09002 * 110.66903 * 337.77835 * 10 9 7 43 43 H 1.09003 * 110.66008 * 100.89214 * 10 9 7 44 44 H 1.08010 * 125.89375 * 359.97438 * 14 13 11 45 45 H 1.09000 * 109.47331 * 269.97475 * 17 16 15 46 46 H 1.09001 * 109.46624 * 29.97682 * 17 16 15 47 47 H 1.08998 * 109.47211 * 149.96838 * 17 16 15 48 48 H 1.08002 * 126.12715 * 180.02562 * 18 16 15 49 49 H 0.97002 * 120.00369 * 337.92930 * 21 19 11 50 50 H 0.96997 * 119.99785 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.91216 * 273.87346 * 30 9 7 52 52 H 1.08996 * 109.91336 * 35.15247 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 1.0692 2.4681 -0.0006 5 6 2.9431 1.3861 -1.2493 6 6 2.9431 1.3863 1.2492 7 6 3.6970 2.6912 1.2488 8 8 3.5453 3.4788 0.3392 9 7 4.5390 2.9832 2.2599 10 6 5.3574 4.2082 2.4136 11 6 6.6945 3.6777 2.9799 12 1 7.3202 3.2835 2.1791 13 6 7.4188 4.7565 3.7433 14 6 6.8892 5.5241 4.7856 15 7 7.8170 6.3497 5.1975 16 7 8.9648 6.1401 4.4223 17 6 10.2343 6.8600 4.5499 18 6 8.6947 5.1576 3.5375 19 6 6.2422 2.5445 3.9296 20 1 6.1938 2.9059 4.9568 21 7 7.1580 1.4050 3.8345 22 6 7.2384 0.5036 4.8623 23 1 6.6263 0.6325 5.7427 24 6 8.1058 -0.5764 4.7720 25 7 8.1826 -1.4431 5.7596 26 14 9.1638 -0.7998 3.2489 27 1 10.4572 -0.0949 3.4368 28 1 9.4160 -2.2466 3.0292 29 1 8.4593 -0.2355 2.0696 30 6 4.8389 2.1456 3.4362 31 1 -0.5399 -0.9354 -0.0004 32 1 -0.5400 0.9352 -0.0004 33 1 1.8501 -0.9353 0.0004 34 1 1.6142 3.4120 -0.0011 35 1 0.4428 2.4101 -0.8908 36 1 0.4422 2.4105 0.8891 37 1 3.6514 0.5577 -1.2492 38 1 2.3164 1.3283 -2.1393 39 1 3.4884 2.3299 -1.2491 40 1 3.6514 0.5578 1.2493 41 1 2.3163 1.3286 2.1392 42 1 5.5135 4.6901 1.4485 43 1 4.8902 4.8970 3.1175 44 1 5.8881 5.4468 5.1836 45 1 10.2204 7.7384 3.9048 46 1 10.3727 7.1716 5.5852 47 1 11.0544 6.2054 4.2549 48 1 9.3751 4.7620 2.7979 49 1 7.7075 1.2890 3.0436 50 1 8.7890 -2.1975 5.6967 51 1 4.1038 2.3291 4.2198 52 1 4.8299 1.0928 3.1542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316670832.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:38 Heat of formation + Delta-G solvation = 88.601122 kcal Electronic energy + Delta-G solvation = -31268.852175 eV Core-core repulsion = 27271.566090 eV Total energy + Delta-G solvation = -3997.286085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.17799 -40.12285 -38.24993 -36.61390 -34.12937 -33.46446 -31.98323 -31.29025 -30.95128 -29.28380 -27.82338 -27.70718 -27.21158 -26.06194 -24.05727 -22.86454 -22.06947 -21.20634 -20.53832 -19.65965 -18.95826 -18.06475 -17.70723 -16.93107 -16.64447 -15.82036 -15.41905 -15.33525 -15.20053 -14.94618 -14.41589 -14.29937 -13.94842 -13.90077 -13.57979 -13.38693 -12.95805 -12.92435 -12.81463 -12.67651 -12.63976 -12.20211 -12.15273 -12.06781 -11.86541 -11.65691 -11.31729 -11.18531 -11.03555 -10.97871 -10.91759 -10.84895 -10.70431 -10.59406 -10.36217 -10.13125 -9.67734 -9.43125 -9.32519 -9.30017 -9.07644 -8.46030 -8.15053 -7.34519 -5.85201 -3.22008 2.00534 2.23849 2.60202 2.81689 2.94837 3.23383 3.30091 3.32892 3.39448 4.50885 4.52298 4.60541 4.79285 4.89964 4.93191 4.97455 5.03887 5.05099 5.07564 5.24849 5.27806 5.29589 5.30490 5.38797 5.50189 5.51505 5.63996 5.66228 5.69983 5.74699 5.76804 5.78712 5.83237 5.90843 5.97274 6.03283 6.08767 6.14567 6.16525 6.29599 6.39666 6.42492 6.46553 6.52247 6.63526 6.76991 6.78059 6.81219 7.09101 7.79901 7.81976 7.90752 8.33574 8.40310 9.10767 9.83168 10.01641 11.32729 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007986 B = 0.003761 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3505.167827 B = 7443.181183 C =10000.772276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.141 4.141 3 C -0.020 4.020 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.125 4.125 7 C 0.535 3.465 8 O -0.546 6.546 9 N -0.617 5.617 10 C 0.117 3.883 11 C -0.033 4.033 12 H 0.084 0.916 13 C -0.208 4.208 14 C 0.058 3.942 15 N -0.301 5.301 16 N -0.380 5.380 17 C 0.105 3.895 18 C 0.060 3.940 19 C 0.184 3.816 20 H 0.077 0.923 21 N -0.738 5.738 22 C -0.247 4.247 23 H 0.092 0.908 24 C 0.010 3.990 25 N -0.930 5.930 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.071 3.929 31 H 0.093 0.907 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.181 0.819 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.170 0.830 49 H 0.362 0.638 50 H 0.260 0.740 51 H 0.061 0.939 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.251 11.827 -8.960 16.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.159 4.159 3 C -0.020 4.020 4 C -0.211 4.211 5 C -0.206 4.206 6 C -0.165 4.165 7 C 0.325 3.675 8 O -0.426 6.426 9 N -0.350 5.350 10 C -0.006 4.006 11 C -0.054 4.054 12 H 0.102 0.898 13 C -0.220 4.220 14 C -0.128 4.128 15 N -0.122 5.122 16 N -0.163 5.163 17 C -0.037 4.037 18 C -0.085 4.085 19 C 0.072 3.928 20 H 0.095 0.905 21 N -0.379 5.379 22 C -0.377 4.377 23 H 0.110 0.890 24 C -0.187 4.187 25 N -0.577 5.577 26 Si 0.711 3.289 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.203 1.203 30 C -0.055 4.055 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.198 0.802 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.187 0.813 49 H 0.195 0.805 50 H 0.070 0.930 51 H 0.080 0.920 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.949 13.077 -8.427 16.656 hybrid contribution 0.756 -1.324 -1.412 2.078 sum -5.193 11.753 -9.839 16.183 Atomic orbital electron populations 1.23973 0.96143 1.01888 1.01753 1.22993 0.95948 0.97789 0.99172 1.19374 0.94895 0.93112 0.94622 1.22170 0.98481 0.99791 1.00638 1.22052 0.99205 1.03674 0.95660 1.21674 0.99160 0.95990 0.99679 1.20228 0.78651 0.88316 0.80292 1.90535 1.65400 1.51272 1.35398 1.48894 1.42613 1.20675 1.22813 1.22338 0.89682 0.87335 1.01199 1.20750 0.94541 0.93154 0.96999 0.89804 1.19684 0.94808 1.04027 1.03487 1.23683 0.99051 0.94212 0.95879 1.77300 0.92776 1.24687 1.17433 1.48343 1.11391 1.29481 1.27080 1.21788 0.81104 0.96684 1.04129 1.22269 0.97629 0.92397 0.96235 1.21143 0.87518 0.86706 0.97391 0.90549 1.42811 1.47295 1.27459 1.20361 1.19063 1.20156 1.01723 0.96756 0.89000 1.24649 0.99458 0.97332 0.97214 1.69695 1.40821 1.15491 1.31729 0.86617 0.81162 0.77225 0.83892 1.21157 1.21738 1.20267 1.23399 0.99445 0.96277 0.86350 0.88836 0.87933 0.87427 0.89519 0.93040 0.93321 0.93347 0.93229 0.89450 0.88613 0.88971 0.90251 0.91058 0.80241 0.91099 0.89481 0.89637 0.81257 0.80488 0.92990 0.92042 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 13.70 29.01 0.40 -1.59 16 2 C -0.14 -1.54 8.76 -36.03 -0.32 -1.85 16 3 C -0.02 -0.23 0.74 -155.66 -0.11 -0.35 16 4 C -0.15 -1.82 6.83 37.16 0.25 -1.56 16 5 C -0.15 -1.87 8.16 37.16 0.30 -1.56 16 6 C -0.13 -1.59 3.83 -27.88 -0.11 -1.70 16 7 C 0.54 7.85 7.30 -10.98 -0.08 7.77 16 8 O -0.55 -8.95 11.56 5.56 0.06 -8.89 16 9 N -0.62 -8.87 3.29 -169.98 -0.56 -9.43 16 10 C 0.12 1.57 6.49 -2.31 -0.02 1.56 16 11 C -0.03 -0.47 3.17 -90.08 -0.29 -0.76 16 12 H 0.08 1.25 7.73 -51.93 -0.40 0.85 16 13 C -0.21 -2.92 4.93 -105.05 -0.52 -3.43 16 14 C 0.06 0.81 10.81 -17.37 -0.19 0.62 16 15 N -0.30 -4.48 12.58 30.63 0.39 -4.10 16 16 N -0.38 -4.93 4.01 -68.16 -0.27 -5.21 16 17 C 0.10 0.88 11.47 59.85 0.69 1.57 16 18 C 0.06 0.79 11.40 -17.22 -0.20 0.59 16 19 C 0.18 3.11 3.19 -66.56 -0.21 2.89 16 20 H 0.08 1.35 7.45 -51.93 -0.39 0.96 16 21 N -0.74 -15.70 4.88 -52.09 -0.25 -15.95 16 22 C -0.25 -6.42 10.45 -15.06 -0.16 -6.58 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 25 N -0.93 -27.99 13.97 55.49 0.78 -27.21 16 26 Si 0.88 21.02 27.74 -169.99 -4.71 16.30 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.19 6.52 56.52 0.37 -5.82 16 30 C 0.07 1.08 6.56 -2.98 -0.02 1.06 16 31 H 0.09 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.10 0.97 5.69 -52.49 -0.30 0.67 16 33 H 0.11 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.09 1.19 5.51 -51.93 -0.29 0.91 16 35 H 0.05 0.56 7.50 -51.93 -0.39 0.17 16 36 H 0.05 0.53 7.50 -51.93 -0.39 0.14 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.26 5.51 -51.93 -0.29 0.97 16 40 H 0.10 1.23 7.91 -51.93 -0.41 0.82 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.09 7.85 -51.93 -0.41 0.68 16 43 H 0.07 0.87 7.43 -51.93 -0.39 0.48 16 44 H 0.18 2.08 7.99 -52.48 -0.42 1.66 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 49 H 0.36 7.72 5.40 -40.82 -0.22 7.50 16 50 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 51 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 52 H 0.09 1.44 7.32 -51.93 -0.38 1.06 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -32.33 410.36 -7.54 -39.86 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -8.48 Total: 11.59 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -0.66 Total: -3.15 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: 0.07 Total: -61.90 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.06 Total: -8.89 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.33 -7.54 -39.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316670832.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.465 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds