Wall clock time and date at job start Wed Apr 1 2020 04:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50705 * 120.00197 * 2 1 4 4 N 1.46501 * 109.46989 * 127.68221 * 3 2 1 5 5 C 1.36450 * 127.13197 * 264.18772 * 4 3 2 6 6 N 1.38576 * 126.48049 * 359.97438 * 5 4 3 7 7 C 1.48658 * 110.99713 * 55.48608 * 6 5 4 8 8 C 1.54670 * 104.63703 * 201.53636 * 7 6 5 9 9 C 1.53177 * 104.63174 * 23.68577 * 8 7 6 10 10 C 1.53726 * 111.15429 * 238.68203 * 9 8 7 11 11 C 1.55240 * 101.80664 * 259.30891 * 10 9 8 12 12 O 1.44545 * 103.65643 * 323.88508 * 11 10 9 13 13 C 1.44067 * 107.00487 * 39.32333 * 12 11 10 14 14 C 1.48829 * 110.99537 * 299.85624 * 6 5 4 15 15 N 1.31225 * 107.05317 * 180.24368 * 5 4 3 16 16 N 1.28536 * 109.85726 * 359.56345 * 15 5 4 17 17 C 1.30296 * 110.05119 * 0.44910 * 16 15 5 18 18 C 1.50696 * 126.34504 * 179.76469 * 17 16 15 19 19 C 1.52998 * 109.47150 * 126.58434 * 18 17 16 20 20 C 1.53004 * 109.47317 * 246.58297 * 18 17 16 21 21 C 1.50695 * 109.47349 * 6.58353 * 18 17 16 22 22 H 1.08001 * 120.00181 * 357.72591 * 21 18 17 23 23 C 1.37883 * 120.00296 * 177.72333 * 21 18 17 24 24 N 1.31509 * 119.99754 * 6.62544 * 23 21 18 25 25 Si 1.86791 * 120.00041 * 186.62235 * 23 21 18 26 26 H 1.48498 * 109.47471 * 94.99696 * 25 23 21 27 27 H 1.48500 * 109.47189 * 214.99378 * 25 23 21 28 28 H 1.48501 * 109.47619 * 334.99267 * 25 23 21 29 29 H 1.08003 * 119.99931 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00401 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99931 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47045 * 7.68112 * 3 2 1 33 33 H 1.08997 * 109.46902 * 247.68496 * 3 2 1 34 34 H 1.09001 * 110.40403 * 82.75136 * 7 6 5 35 35 H 1.08995 * 110.50480 * 320.38018 * 7 6 5 36 36 H 1.08998 * 110.40208 * 264.89497 * 8 7 6 37 37 H 1.09002 * 110.49918 * 142.52067 * 8 7 6 38 38 H 1.08992 * 110.96798 * 17.43812 * 10 9 8 39 39 H 1.09004 * 110.96189 * 141.15037 * 10 9 8 40 40 H 1.08996 * 110.58807 * 82.39538 * 11 10 9 41 41 H 1.08994 * 110.59636 * 205.17306 * 11 10 9 42 42 H 1.08998 * 109.98064 * 214.45737 * 13 12 11 43 43 H 1.09005 * 109.97240 * 93.21107 * 13 12 11 44 44 H 1.08997 * 110.46640 * 39.39387 * 14 6 5 45 45 H 1.09007 * 110.45734 * 276.81581 * 14 6 5 46 46 H 1.09004 * 109.46933 * 69.27699 * 19 18 17 47 47 H 1.08999 * 109.47363 * 189.26793 * 19 18 17 48 48 H 1.08991 * 109.47211 * 309.27327 * 19 18 17 49 49 H 1.09002 * 109.47059 * 65.53708 * 20 18 17 50 50 H 1.08997 * 109.47275 * 185.54207 * 20 18 17 51 51 H 1.08997 * 109.47163 * 305.54205 * 20 18 17 52 52 H 0.97003 * 119.99944 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0388 1.3058 1.0931 5 6 2.8780 1.8356 2.3402 6 7 1.7511 2.4829 2.8213 7 6 0.5449 1.6248 2.6851 8 6 -0.6439 2.6136 2.7166 9 6 -0.0468 3.9510 2.2680 10 6 -0.2389 5.0328 3.3432 11 6 -1.4547 5.8214 2.7868 12 8 -1.2491 5.8007 1.3561 13 6 -0.7497 4.4916 1.0212 14 6 1.4407 3.6894 2.0070 15 7 3.9942 1.6216 2.9962 16 7 4.8268 0.9909 2.2471 17 6 4.2990 0.7753 1.0755 18 6 4.9555 0.0712 -0.0839 19 6 4.0485 -1.0595 -0.5736 20 6 5.1870 1.0681 -1.2212 21 6 6.2772 -0.5012 0.3592 22 1 6.6258 -0.3370 1.3681 23 6 7.0416 -1.2346 -0.5234 24 7 6.6830 -1.3256 -1.7854 25 14 8.5864 -2.0987 0.0733 26 1 8.2651 -3.5078 0.4142 27 1 9.6144 -2.0708 -0.9980 28 1 9.1080 -1.4045 1.2780 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3632 2.1290 0.1374 33 1 2.5831 1.4246 -0.9507 34 1 0.4798 0.9256 3.5188 35 1 0.5653 1.0851 1.7383 36 1 -1.0432 2.6957 3.7275 37 1 -1.4241 2.2948 2.0253 38 1 -0.4733 4.5854 4.3091 39 1 0.6413 5.6719 3.4150 40 1 -2.3876 5.3211 3.0467 41 1 -1.4523 6.8447 3.1621 42 1 -0.0414 4.5631 0.1958 43 1 -1.5766 3.8367 0.7463 44 1 1.6127 3.4900 0.9494 45 1 2.0405 4.5373 2.3383 46 1 3.1617 -0.6357 -1.0449 47 1 4.5879 -1.6703 -1.2976 48 1 3.7498 -1.6780 0.2727 49 1 5.9101 1.8195 -0.9042 50 1 5.5705 0.5404 -2.0945 51 1 4.2453 1.5545 -1.4753 52 1 7.2210 -1.8413 -2.4065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339057042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:39 Heat of formation + Delta-G solvation = 91.148583 kcal Electronic energy + Delta-G solvation = -32997.965438 eV Core-core repulsion = 29000.789819 eV Total energy + Delta-G solvation = -3997.175619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.54641 -40.72247 -38.01508 -36.50232 -35.20203 -33.27059 -32.45692 -31.19777 -30.32271 -29.61125 -28.21532 -26.85484 -26.08444 -25.31885 -24.99763 -23.04940 -22.74019 -21.77978 -20.74213 -20.46243 -19.81904 -18.93569 -17.33597 -16.45968 -16.34524 -16.03010 -15.80013 -15.55634 -15.34118 -15.14069 -14.90615 -14.72531 -14.42376 -13.66997 -13.46860 -13.33734 -13.04483 -12.90673 -12.69280 -12.60002 -12.30980 -12.04981 -11.89785 -11.80643 -11.63046 -11.39796 -11.31159 -11.08897 -10.99690 -10.95825 -10.79013 -10.69231 -10.58158 -10.23338 -10.11834 -10.02017 -10.00879 -9.70109 -9.60947 -9.51347 -8.98980 -8.66438 -8.42241 -8.15154 -6.06985 -4.11572 1.86240 2.32820 2.97355 3.32068 3.39069 3.47153 3.49192 3.60877 3.64705 3.98107 4.08817 4.37739 4.42122 4.47256 4.62046 4.68457 4.74141 4.79602 4.93402 5.09168 5.12859 5.18236 5.22759 5.25241 5.32060 5.35586 5.39298 5.42595 5.45273 5.54552 5.59798 5.68029 5.69313 5.72987 5.76125 5.87155 6.24029 6.35819 6.36783 6.38857 6.46241 6.48583 6.50612 6.57650 6.60285 6.65582 7.04028 7.13880 7.28731 7.53281 7.75201 7.77454 8.05338 8.27434 8.96209 9.50971 9.62869 10.96809 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.003100 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.251427 B = 9029.710164 C = 9430.182404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.172 4.172 3 C 0.123 3.877 4 N -0.501 5.501 5 C 0.291 3.709 6 N -0.407 5.407 7 C 0.009 3.991 8 C -0.109 4.109 9 C -0.099 4.099 10 C -0.135 4.135 11 C 0.045 3.955 12 O -0.378 6.378 13 C 0.059 3.941 14 C 0.044 3.956 15 N -0.270 5.270 16 N -0.290 5.290 17 C 0.249 3.751 18 C 0.145 3.855 19 C -0.142 4.142 20 C -0.129 4.129 21 C -0.493 4.493 22 H 0.078 0.922 23 C 0.063 3.937 24 N -0.894 5.894 25 Si 0.898 3.102 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.270 1.270 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.096 0.904 46 H 0.025 0.975 47 H 0.097 0.903 48 H 0.027 0.973 49 H 0.036 0.964 50 H 0.098 0.902 51 H 0.004 0.996 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.872 8.641 2.619 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.000 4.000 4 N -0.199 5.199 5 C -0.064 4.064 6 N -0.130 5.130 7 C -0.118 4.118 8 C -0.147 4.147 9 C -0.100 4.100 10 C -0.173 4.173 11 C -0.032 4.032 12 O -0.297 6.297 13 C -0.018 4.018 14 C -0.083 4.083 15 N -0.111 5.111 16 N -0.128 5.128 17 C -0.018 4.018 18 C 0.142 3.858 19 C -0.200 4.200 20 C -0.187 4.187 21 C -0.532 4.532 22 H 0.096 0.904 23 C -0.137 4.137 24 N -0.533 5.533 25 Si 0.726 3.274 26 H -0.208 1.208 27 H -0.214 1.214 28 H -0.195 1.195 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.130 0.870 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.043 0.957 47 H 0.115 0.885 48 H 0.046 0.954 49 H 0.055 0.945 50 H 0.117 0.883 51 H 0.023 0.977 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.685 8.895 4.057 21.088 hybrid contribution -0.273 -0.896 -1.400 1.685 sum -18.958 7.999 2.657 20.748 Atomic orbital electron populations 1.23879 0.95452 1.02229 1.00141 1.23685 0.96311 0.99526 0.99540 1.21240 0.91047 0.96528 0.91226 1.47321 1.14589 1.45726 1.12270 1.23019 0.96230 1.03991 0.83135 1.62572 0.99458 1.04055 1.46915 1.23823 0.88002 0.96147 1.03850 1.22424 0.96942 0.92620 1.02746 1.21924 0.95151 0.96729 0.96172 1.23158 0.99218 0.96552 0.98341 1.23662 0.97273 1.01304 0.80929 1.88955 1.85955 1.31809 1.22954 1.23272 0.97428 0.84816 0.96306 1.23377 0.94631 0.93979 0.96315 1.74463 0.97713 1.14129 1.24762 1.74297 1.22463 1.15191 1.00811 1.26184 0.80795 0.96123 0.98676 1.16927 0.93728 0.90378 0.84765 1.22193 0.97318 0.99756 1.00776 1.21948 0.96963 0.98151 1.01633 1.21107 1.01331 1.31519 0.99235 0.90374 1.24865 0.97914 0.96286 0.94651 1.69805 1.39514 1.41412 1.02548 0.86445 0.82412 0.79854 0.78645 1.20792 1.21384 1.19504 0.88593 0.87433 0.84539 0.89339 0.86975 0.89298 0.90692 0.89943 0.90445 0.89417 0.89882 0.92158 0.88929 0.89728 0.91718 0.92645 0.88617 0.95672 0.88492 0.95381 0.94524 0.88335 0.97723 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 12.43 29.02 0.36 -1.33 16 2 C -0.17 -2.18 7.48 -36.02 -0.27 -2.44 16 3 C 0.12 1.70 4.45 -5.19 -0.02 1.68 16 4 N -0.50 -9.10 2.74 -115.37 -0.32 -9.41 16 5 C 0.29 5.45 6.81 -318.87 -2.17 3.28 16 6 N -0.41 -5.91 5.46 -170.28 -0.93 -6.84 16 7 C 0.01 0.10 6.16 -1.97 -0.01 0.09 16 8 C -0.11 -0.89 6.34 -25.76 -0.16 -1.05 16 9 C -0.10 -0.86 0.90 -153.90 -0.14 -1.00 16 10 C -0.14 -1.07 6.29 -25.17 -0.16 -1.23 16 11 C 0.04 0.33 7.74 38.34 0.30 0.63 16 12 O -0.38 -3.80 11.55 -35.23 -0.41 -4.20 16 13 C 0.06 0.50 7.07 37.16 0.26 0.76 16 14 C 0.04 0.52 5.18 -2.61 -0.01 0.51 16 15 N -0.27 -6.18 12.23 30.31 0.37 -5.81 16 16 N -0.29 -7.22 11.00 32.99 0.36 -6.86 16 17 C 0.25 5.60 6.32 -154.02 -0.97 4.63 16 18 C 0.15 3.38 0.52 -156.82 -0.08 3.30 16 19 C -0.14 -3.05 6.75 37.16 0.25 -2.80 16 20 C -0.13 -2.87 8.11 37.16 0.30 -2.57 16 21 C -0.49 -13.19 7.91 -34.44 -0.27 -13.46 16 22 H 0.08 2.23 6.96 -52.49 -0.37 1.87 16 23 C 0.06 1.66 5.07 -17.82 -0.09 1.57 16 24 N -0.89 -23.22 9.46 55.43 0.52 -22.69 16 25 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 29 H 0.10 0.73 7.66 -52.48 -0.40 0.32 16 30 H 0.11 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.14 2.01 5.27 -52.48 -0.28 1.74 16 32 H 0.09 1.01 4.42 -51.93 -0.23 0.78 16 33 H 0.11 1.62 5.24 -51.93 -0.27 1.35 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.85 2.10 -51.93 -0.11 0.74 16 36 H 0.08 0.61 7.29 -51.93 -0.38 0.23 16 37 H 0.08 0.50 7.20 -51.93 -0.37 0.12 16 38 H 0.09 0.63 7.37 -51.93 -0.38 0.25 16 39 H 0.08 0.71 7.46 -51.93 -0.39 0.32 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.71 7.38 -51.93 -0.38 0.32 16 43 H 0.06 0.46 7.18 -51.93 -0.37 0.08 16 44 H 0.06 0.66 4.53 -51.93 -0.24 0.42 16 45 H 0.10 1.19 7.43 -51.93 -0.39 0.80 16 46 H 0.02 0.45 4.44 -51.93 -0.23 0.22 16 47 H 0.10 2.30 5.95 -51.93 -0.31 1.99 16 48 H 0.03 0.60 7.70 -51.93 -0.40 0.20 16 49 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 50 H 0.10 2.36 6.19 -51.93 -0.32 2.04 16 51 H 0.00 0.08 5.70 -51.93 -0.30 -0.22 16 52 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 375.22 15.07 5.65 5.65 Total: -1.00 -30.62 375.22 -10.02 -40.63 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.36 Total: 2.85 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -2.90 Total: -9.44 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.01 Total: -51.61 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.41 Total: -4.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.62 -10.02 -40.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339057042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.783 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds