Wall clock time and date at job start Wed Apr 1 2020 04:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50705 * 120.00197 * 2 1 4 4 N 1.46501 * 109.46989 * 127.68221 * 3 2 1 5 5 C 1.36450 * 127.13197 * 264.18772 * 4 3 2 6 6 N 1.38576 * 126.48049 * 359.97438 * 5 4 3 7 7 C 1.48658 * 110.99713 * 55.48608 * 6 5 4 8 8 C 1.54670 * 104.63703 * 201.53636 * 7 6 5 9 9 C 1.53177 * 104.63174 * 23.68577 * 8 7 6 10 10 C 1.53726 * 111.15429 * 238.68203 * 9 8 7 11 11 C 1.55240 * 101.80664 * 259.30891 * 10 9 8 12 12 O 1.44545 * 103.65643 * 323.88508 * 11 10 9 13 13 C 1.44067 * 107.00487 * 39.32333 * 12 11 10 14 14 C 1.48829 * 110.99537 * 299.85624 * 6 5 4 15 15 N 1.31225 * 107.05317 * 180.24368 * 5 4 3 16 16 N 1.28536 * 109.85726 * 359.56345 * 15 5 4 17 17 C 1.30296 * 110.05119 * 0.44910 * 16 15 5 18 18 C 1.50696 * 126.34504 * 179.76469 * 17 16 15 19 19 C 1.52998 * 109.47150 * 126.58434 * 18 17 16 20 20 C 1.53004 * 109.47317 * 246.58297 * 18 17 16 21 21 C 1.50695 * 109.47349 * 6.58353 * 18 17 16 22 22 H 1.08001 * 120.00181 * 357.72591 * 21 18 17 23 23 C 1.37883 * 120.00296 * 177.72333 * 21 18 17 24 24 N 1.31509 * 119.99754 * 6.62544 * 23 21 18 25 25 Si 1.86791 * 120.00041 * 186.62235 * 23 21 18 26 26 H 1.48498 * 109.47471 * 94.99696 * 25 23 21 27 27 H 1.48500 * 109.47189 * 214.99378 * 25 23 21 28 28 H 1.48501 * 109.47619 * 334.99267 * 25 23 21 29 29 H 1.08003 * 119.99931 * 359.97438 * 1 2 3 30 30 H 1.08001 * 120.00401 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99931 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47045 * 7.68112 * 3 2 1 33 33 H 1.08997 * 109.46902 * 247.68496 * 3 2 1 34 34 H 1.09001 * 110.40403 * 82.75136 * 7 6 5 35 35 H 1.08995 * 110.50480 * 320.38018 * 7 6 5 36 36 H 1.08998 * 110.40208 * 264.89497 * 8 7 6 37 37 H 1.09002 * 110.49918 * 142.52067 * 8 7 6 38 38 H 1.08992 * 110.96798 * 17.43812 * 10 9 8 39 39 H 1.09004 * 110.96189 * 141.15037 * 10 9 8 40 40 H 1.08996 * 110.58807 * 82.39538 * 11 10 9 41 41 H 1.08994 * 110.59636 * 205.17306 * 11 10 9 42 42 H 1.08998 * 109.98064 * 214.45737 * 13 12 11 43 43 H 1.09005 * 109.97240 * 93.21107 * 13 12 11 44 44 H 1.08997 * 110.46640 * 39.39387 * 14 6 5 45 45 H 1.09007 * 110.45734 * 276.81581 * 14 6 5 46 46 H 1.09004 * 109.46933 * 69.27699 * 19 18 17 47 47 H 1.08999 * 109.47363 * 189.26793 * 19 18 17 48 48 H 1.08991 * 109.47211 * 309.27327 * 19 18 17 49 49 H 1.09002 * 109.47059 * 65.53708 * 20 18 17 50 50 H 1.08997 * 109.47275 * 185.54207 * 20 18 17 51 51 H 1.08997 * 109.47163 * 305.54205 * 20 18 17 52 52 H 0.97003 * 119.99944 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0388 1.3058 1.0931 5 6 2.8780 1.8356 2.3402 6 7 1.7511 2.4829 2.8213 7 6 0.5449 1.6248 2.6851 8 6 -0.6439 2.6136 2.7166 9 6 -0.0468 3.9510 2.2680 10 6 -0.2389 5.0328 3.3432 11 6 -1.4547 5.8214 2.7868 12 8 -1.2491 5.8007 1.3561 13 6 -0.7497 4.4916 1.0212 14 6 1.4407 3.6894 2.0070 15 7 3.9942 1.6216 2.9962 16 7 4.8268 0.9909 2.2471 17 6 4.2990 0.7753 1.0755 18 6 4.9555 0.0712 -0.0839 19 6 4.0485 -1.0595 -0.5736 20 6 5.1870 1.0681 -1.2212 21 6 6.2772 -0.5012 0.3592 22 1 6.6258 -0.3370 1.3681 23 6 7.0416 -1.2346 -0.5234 24 7 6.6830 -1.3256 -1.7854 25 14 8.5864 -2.0987 0.0733 26 1 8.2651 -3.5078 0.4142 27 1 9.6144 -2.0708 -0.9980 28 1 9.1080 -1.4045 1.2780 29 1 -0.5400 0.9353 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3632 2.1290 0.1374 33 1 2.5831 1.4246 -0.9507 34 1 0.4798 0.9256 3.5188 35 1 0.5653 1.0851 1.7383 36 1 -1.0432 2.6957 3.7275 37 1 -1.4241 2.2948 2.0253 38 1 -0.4733 4.5854 4.3091 39 1 0.6413 5.6719 3.4150 40 1 -2.3876 5.3211 3.0467 41 1 -1.4523 6.8447 3.1621 42 1 -0.0414 4.5631 0.1958 43 1 -1.5766 3.8367 0.7463 44 1 1.6127 3.4900 0.9494 45 1 2.0405 4.5373 2.3383 46 1 3.1617 -0.6357 -1.0449 47 1 4.5879 -1.6703 -1.2976 48 1 3.7498 -1.6780 0.2727 49 1 5.9101 1.8195 -0.9042 50 1 5.5705 0.5404 -2.0945 51 1 4.2453 1.5545 -1.4753 52 1 7.2210 -1.8413 -2.4065 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339057042.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:38 Heat of formation + Delta-G solvation = 73.379956 kcal Electronic energy + Delta-G solvation = -32998.735943 eV Core-core repulsion = 29000.789819 eV Total energy + Delta-G solvation = -3997.946124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.04757 -41.54254 -38.93279 -38.01615 -36.61231 -34.29610 -33.79169 -32.88801 -31.17824 -30.34626 -29.65567 -28.01772 -27.84904 -27.15801 -26.00992 -23.91936 -23.61943 -23.22540 -22.08239 -21.63423 -20.66494 -20.28899 -18.51534 -18.01018 -17.24592 -17.15990 -17.00512 -16.86518 -16.44125 -16.29827 -16.00436 -15.79695 -15.42688 -15.21157 -14.61132 -14.55323 -14.35259 -13.90239 -13.67170 -13.55277 -13.43160 -13.32396 -13.12102 -12.96962 -12.83547 -12.72020 -12.67488 -12.52543 -12.39748 -12.21933 -12.07360 -12.03242 -11.89245 -11.83320 -11.64737 -11.45177 -11.36885 -11.02190 -10.72753 -10.61650 -10.49348 -10.38082 -9.93195 -9.80896 -8.08053 -6.17724 0.79054 0.98512 1.40867 1.43706 1.54536 1.68813 1.98555 2.41902 2.47570 2.96590 3.17772 3.20504 3.34494 3.45754 3.64204 3.69419 3.77963 3.98950 4.03812 4.04352 4.08818 4.19894 4.31117 4.35935 4.41402 4.51096 4.57092 4.65744 4.68730 4.73900 4.76482 4.79674 4.82512 4.85731 4.87124 4.93590 4.93884 4.97524 5.01842 5.06632 5.09131 5.16448 5.23791 5.44911 5.46148 5.48644 5.54830 5.58296 5.72007 5.91278 5.94394 6.03962 6.28319 6.40750 6.85674 7.47840 7.98667 8.93332 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020763 B = 0.003100 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.251427 B = 9029.710164 C = 9430.182404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.213 4.213 3 C 0.118 3.882 4 N -0.491 5.491 5 C 0.320 3.680 6 N -0.419 5.419 7 C 0.004 3.996 8 C -0.098 4.098 9 C -0.089 4.089 10 C -0.136 4.136 11 C 0.046 3.954 12 O -0.402 6.402 13 C 0.058 3.942 14 C 0.042 3.958 15 N -0.323 5.323 16 N -0.338 5.338 17 C 0.232 3.768 18 C 0.142 3.858 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.518 4.518 22 H 0.048 0.952 23 C 0.034 3.966 24 N -0.899 5.899 25 Si 0.944 3.056 26 H -0.277 1.277 27 H -0.278 1.278 28 H -0.284 1.284 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.016 0.984 49 H 0.014 0.986 50 H 0.082 0.918 51 H 0.036 0.964 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.099 9.207 1.857 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.232 4.232 3 C -0.003 4.003 4 N -0.187 5.187 5 C -0.037 4.037 6 N -0.144 5.144 7 C -0.122 4.122 8 C -0.135 4.135 9 C -0.090 4.090 10 C -0.174 4.174 11 C -0.030 4.030 12 O -0.321 6.321 13 C -0.019 4.019 14 C -0.084 4.084 15 N -0.164 5.164 16 N -0.175 5.175 17 C -0.037 4.037 18 C 0.139 3.861 19 C -0.183 4.183 20 C -0.175 4.175 21 C -0.557 4.557 22 H 0.066 0.934 23 C -0.166 4.166 24 N -0.538 5.538 25 Si 0.771 3.229 26 H -0.203 1.203 27 H -0.203 1.203 28 H -0.209 1.209 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.035 0.965 49 H 0.033 0.967 50 H 0.101 0.899 51 H 0.055 0.945 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.936 9.459 3.273 25.025 hybrid contribution 0.890 -0.995 -1.103 1.732 sum -22.045 8.464 2.170 23.714 Atomic orbital electron populations 1.24241 0.94061 1.04506 0.94371 1.23353 0.97445 0.97585 1.04811 1.21567 0.90659 0.98691 0.89384 1.47458 1.13829 1.44311 1.13128 1.23419 0.96199 1.01365 0.82701 1.62754 0.99252 1.05146 1.47232 1.23980 0.87815 0.96682 1.03749 1.22464 0.95863 0.90646 1.04550 1.21863 0.92678 0.97487 0.97012 1.23164 0.99225 0.96354 0.98651 1.23782 0.97523 1.01992 0.79714 1.88938 1.86138 1.32752 1.24292 1.23362 0.98148 0.84691 0.95660 1.23465 0.96957 0.92175 0.95846 1.74316 0.99525 1.16466 1.26068 1.74157 1.24447 1.16674 1.02231 1.25826 0.82633 0.97276 0.97949 1.16834 0.92792 0.91077 0.85373 1.21992 0.97909 0.98656 0.99720 1.21762 0.97938 0.97325 1.00453 1.21198 1.03527 1.32772 0.98166 0.93375 1.25324 0.99759 0.96627 0.94903 1.69867 1.39961 1.41301 1.02633 0.85759 0.80292 0.78990 0.77878 1.20256 1.20294 1.20935 0.85551 0.85671 0.87172 0.86313 0.87685 0.90141 0.90273 0.88667 0.87244 0.88493 0.91181 0.90284 0.88231 0.89915 0.89251 0.92446 0.89941 0.92269 0.90776 0.96475 0.96660 0.89897 0.94479 0.92680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 12.43 67.79 0.84 -1.02 16 2 C -0.21 -4.83 7.48 25.66 0.19 -4.64 16 3 C 0.12 3.03 4.45 85.63 0.38 3.41 16 4 N -0.49 -17.77 2.74 -518.91 -1.42 -19.20 16 5 C 0.32 12.04 6.81 260.11 1.77 13.81 16 6 N -0.42 -11.64 5.46 -692.64 -3.78 -15.42 16 7 C 0.00 0.08 6.16 86.53 0.53 0.62 16 8 C -0.10 -1.10 6.34 31.22 0.20 -0.91 16 9 C -0.09 -1.24 0.90 -51.78 -0.05 -1.29 16 10 C -0.14 -1.78 6.29 31.61 0.20 -1.58 16 11 C 0.05 0.52 7.74 72.75 0.56 1.09 16 12 O -0.40 -6.70 11.55 -148.98 -1.72 -8.42 16 13 C 0.06 0.73 7.07 71.98 0.51 1.24 16 14 C 0.04 0.92 5.18 86.02 0.45 1.36 16 15 N -0.32 -15.50 12.23 -58.00 -0.71 -16.21 16 16 N -0.34 -17.80 11.00 -49.54 -0.55 -18.34 16 17 C 0.23 10.84 6.32 137.64 0.87 11.71 16 18 C 0.14 6.86 0.52 -53.68 -0.03 6.83 16 19 C -0.12 -5.44 6.75 71.98 0.49 -4.95 16 20 C -0.12 -5.30 8.11 71.98 0.58 -4.71 16 21 C -0.52 -29.07 7.91 25.60 0.20 -28.86 16 22 H 0.05 2.94 6.96 -2.91 -0.02 2.92 16 23 C 0.03 1.81 5.07 84.66 0.43 2.24 16 24 N -0.90 -47.46 9.46 21.45 0.20 -47.25 16 25 Si 0.94 44.53 29.54 68.60 2.03 46.56 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 28 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 29 H 0.13 1.02 7.66 -2.91 -0.02 1.00 16 30 H 0.13 1.38 8.06 -2.91 -0.02 1.36 16 31 H 0.11 3.13 5.27 -2.91 -0.02 3.12 16 32 H 0.12 2.26 4.42 -2.39 -0.01 2.25 16 33 H 0.11 2.82 5.24 -2.39 -0.01 2.81 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.08 1.50 2.10 -2.39 -0.01 1.50 16 36 H 0.09 0.92 7.29 -2.39 -0.02 0.90 16 37 H 0.11 0.63 7.20 -2.39 -0.02 0.61 16 38 H 0.10 1.09 7.37 -2.39 -0.02 1.08 16 39 H 0.07 1.10 7.46 -2.38 -0.02 1.09 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.06 7.38 -2.39 -0.02 1.05 16 43 H 0.09 0.71 7.18 -2.38 -0.02 0.69 16 44 H 0.06 1.22 4.53 -2.39 -0.01 1.21 16 45 H 0.08 2.00 7.43 -2.38 -0.02 1.99 16 46 H 0.06 2.13 4.44 -2.38 -0.01 2.12 16 47 H 0.07 3.58 5.95 -2.39 -0.01 3.56 16 48 H 0.02 0.74 7.70 -2.39 -0.02 0.72 16 49 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.08 4.03 6.19 -2.39 -0.01 4.01 16 51 H 0.04 1.39 5.70 -2.39 -0.01 1.38 16 52 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -72.32 375.22 3.13 -69.19 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.96 Total: 14.76 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 8.13 Total: -5.66 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -6.26 Total: -116.43 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: -1.72 Total: -8.42 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -72.32 3.13 -69.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339057042.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.567 kcal (2) G-P(sol) polarization free energy of solvation -72.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds