Wall clock time and date at job start Wed Apr 1 2020 04:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00573 * 2 1 4 4 N 1.46498 * 109.47270 * 124.99357 * 3 2 1 5 5 C 1.36452 * 127.13693 * 267.37626 * 4 3 2 6 6 N 1.38584 * 126.47434 * 359.97438 * 5 4 3 7 7 C 1.46843 * 110.99875 * 56.33828 * 6 5 4 8 8 C 1.50143 * 110.27318 * 174.31041 * 7 6 5 9 9 C 1.29819 * 123.28690 * 342.97718 * 8 7 6 10 10 C 1.50699 * 118.55327 * 180.34981 * 9 8 7 11 11 O 1.42897 * 109.47325 * 359.97438 * 10 9 8 12 12 C 1.42901 * 114.00189 * 180.02562 * 11 10 9 13 13 C 1.50312 * 122.89286 * 0.36317 * 9 8 7 14 14 C 1.47241 * 110.99945 * 179.26822 * 6 5 4 15 15 N 1.31225 * 107.05207 * 180.26851 * 5 4 3 16 16 N 1.28527 * 109.85864 * 359.73296 * 15 5 4 17 17 C 1.30300 * 110.05308 * 0.02562 * 16 15 5 18 18 C 1.50696 * 126.34275 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47290 * 119.25400 * 18 17 16 20 20 C 1.52995 * 109.47558 * 359.24973 * 18 17 16 21 21 C 1.50704 * 109.47041 * 239.25088 * 18 17 16 22 22 H 1.07999 * 119.99973 * 0.02562 * 21 18 17 23 23 C 1.37874 * 120.00153 * 180.27561 * 21 18 17 24 24 N 1.31517 * 119.99980 * 359.72942 * 23 21 18 25 25 Si 1.86797 * 120.00231 * 179.72405 * 23 21 18 26 26 H 1.48501 * 109.47144 * 90.00069 * 25 23 21 27 27 H 1.48499 * 109.47377 * 210.00274 * 25 23 21 28 28 H 1.48498 * 109.47231 * 330.00404 * 25 23 21 29 29 H 1.08003 * 119.99375 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00379 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99375 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46690 * 4.99859 * 3 2 1 33 33 H 1.08999 * 109.47130 * 245.00173 * 3 2 1 34 34 H 1.08995 * 109.33619 * 294.56239 * 7 6 5 35 35 H 1.08999 * 109.33303 * 54.22673 * 7 6 5 36 36 H 1.08001 * 118.35700 * 162.94851 * 8 7 6 37 37 H 1.09004 * 109.47279 * 119.99768 * 10 9 8 38 38 H 1.08997 * 109.46842 * 239.99429 * 10 9 8 39 39 H 1.08996 * 109.46768 * 59.99897 * 12 11 10 40 40 H 1.09001 * 109.47141 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47029 * 300.00143 * 12 11 10 42 42 H 1.08996 * 109.42829 * 103.56036 * 13 9 8 43 43 H 1.08997 * 109.43188 * 223.45823 * 13 9 8 44 44 H 1.09005 * 109.63515 * 287.50742 * 14 6 5 45 45 H 1.09005 * 109.63918 * 48.11023 * 14 6 5 46 46 H 1.08998 * 109.47406 * 189.19829 * 19 18 17 47 47 H 1.09007 * 109.47041 * 309.20317 * 19 18 17 48 48 H 1.09006 * 109.47064 * 69.19736 * 19 18 17 49 49 H 1.09004 * 109.47428 * 300.00018 * 20 18 17 50 50 H 1.08998 * 109.46989 * 59.99970 * 20 18 17 51 51 H 1.09001 * 109.47593 * 180.02562 * 20 18 17 52 52 H 0.97004 * 120.00360 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.7612 1.8375 2.3773 6 7 1.5895 2.4304 2.8202 7 6 0.4445 1.5276 2.6462 8 6 -0.7891 2.1285 3.2557 9 6 -0.7584 3.1069 4.1084 10 6 -2.0625 3.6232 4.6595 11 8 -3.1455 2.8820 4.0940 12 6 -4.4344 3.2947 4.5527 13 6 0.5206 3.7477 4.5698 14 6 1.7051 2.8392 4.2300 15 7 3.8587 1.6620 3.0749 16 7 4.7476 1.0805 2.3514 17 6 4.2741 0.8528 1.1590 18 6 5.0045 0.1900 0.0197 19 6 4.2599 -1.0814 -0.3926 20 6 6.4231 -0.1714 0.4645 21 6 5.0711 1.1354 -1.1521 22 1 4.6291 2.1181 -1.0788 23 6 5.6917 0.7439 -2.3193 24 7 6.2303 -0.4526 -2.4084 25 14 5.7675 1.9129 -3.7743 26 1 7.0017 2.7341 -3.6859 27 1 5.7823 1.1315 -5.0370 28 1 4.5787 2.8027 -3.7569 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 0.2762 1.3590 1.5826 35 1 0.6580 0.5761 3.1331 36 1 -1.7502 1.7269 2.9701 37 1 -2.0699 3.5081 5.7434 38 1 -2.1724 4.6774 4.4054 39 1 -4.5930 4.3421 4.2962 40 1 -5.2020 2.6842 4.0769 41 1 -4.4914 3.1728 5.6343 42 1 0.6454 4.7086 4.0706 43 1 0.4804 3.9019 5.6481 44 1 1.6864 1.9569 4.8699 45 1 2.6381 3.3830 4.3784 46 1 4.8680 -1.6454 -1.0999 47 1 4.0680 -1.6923 0.4895 48 1 3.3132 -0.8123 -0.8612 49 1 6.9536 0.7344 0.7582 50 1 6.3750 -0.8551 1.3120 51 1 6.9515 -0.6504 -0.3597 52 1 6.6667 -0.7282 -3.2298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340429097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:53 Heat of formation + Delta-G solvation = 91.354214 kcal Electronic energy + Delta-G solvation = -32107.245267 eV Core-core repulsion = 28110.078566 eV Total energy + Delta-G solvation = -3997.166702 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.28639 -39.43850 -37.95737 -36.26641 -35.34702 -33.97660 -32.30318 -31.38732 -30.96115 -28.98498 -27.37956 -26.46339 -25.95306 -25.70395 -25.31383 -24.01401 -22.97028 -21.73443 -20.46964 -20.19088 -18.64705 -17.80358 -17.24892 -16.64049 -16.49623 -16.26123 -16.04293 -15.41058 -15.17107 -14.98361 -14.92972 -14.48693 -14.16858 -13.64375 -13.44922 -13.23714 -13.20487 -13.11590 -12.63326 -12.43016 -12.12651 -12.05198 -11.84943 -11.65912 -11.43515 -11.38410 -11.12776 -11.07130 -10.86176 -10.75053 -10.68746 -10.54950 -10.31543 -10.16016 -10.10168 -9.80289 -9.72370 -9.46036 -9.36285 -9.17353 -8.94527 -8.79873 -8.48615 -7.55403 -6.13955 -4.25515 2.03266 2.12349 2.56246 3.03716 3.21607 3.29174 3.31065 3.38037 3.70009 4.06178 4.30251 4.47977 4.79750 4.87168 4.94185 4.94781 5.03366 5.05233 5.09013 5.12502 5.15879 5.17203 5.30502 5.31988 5.42526 5.45140 5.49196 5.59172 5.75114 5.80805 5.86726 5.90271 6.00797 6.06359 6.13224 6.38453 6.52544 6.57469 6.60905 6.65220 6.75083 6.75980 6.88043 6.95410 7.01191 7.06995 7.26581 7.33124 7.52078 7.58620 7.81760 7.91733 8.05126 8.21539 8.71322 9.40185 9.63707 10.87552 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.002977 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.325977 B = 9403.685698 C = 9991.522650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.165 4.165 3 C 0.130 3.870 4 N -0.468 5.468 5 C 0.320 3.680 6 N -0.443 5.443 7 C 0.065 3.935 8 C -0.131 4.131 9 C -0.134 4.134 10 C 0.099 3.901 11 O -0.389 6.389 12 C 0.032 3.968 13 C -0.075 4.075 14 C 0.073 3.927 15 N -0.331 5.331 16 N -0.312 5.312 17 C 0.247 3.753 18 C 0.146 3.854 19 C -0.135 4.135 20 C -0.117 4.117 21 C -0.515 4.515 22 H 0.055 0.945 23 C 0.074 3.926 24 N -0.878 5.878 25 Si 0.894 3.106 26 H -0.279 1.279 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.129 0.871 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.010 0.990 48 H 0.041 0.959 49 H 0.034 0.966 50 H 0.018 0.982 51 H 0.088 0.912 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.694 4.679 9.567 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.184 4.184 3 C 0.007 3.993 4 N -0.161 5.161 5 C -0.036 4.036 6 N -0.166 5.166 7 C -0.061 4.061 8 C -0.149 4.149 9 C -0.135 4.135 10 C 0.023 3.977 11 O -0.308 6.308 12 C -0.064 4.064 13 C -0.112 4.112 14 C -0.055 4.055 15 N -0.175 5.175 16 N -0.150 5.150 17 C -0.021 4.021 18 C 0.143 3.857 19 C -0.193 4.193 20 C -0.175 4.175 21 C -0.554 4.554 22 H 0.074 0.926 23 C -0.129 4.129 24 N -0.515 5.515 25 Si 0.722 3.278 26 H -0.205 1.205 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.107 0.893 33 H 0.147 0.853 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.115 0.885 46 H 0.109 0.891 47 H 0.029 0.971 48 H 0.060 0.940 49 H 0.054 0.946 50 H 0.037 0.963 51 H 0.106 0.894 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.692 4.898 10.209 21.005 hybrid contribution -0.981 0.323 -1.291 1.653 sum -18.673 5.221 8.918 21.342 Atomic orbital electron populations 1.23882 0.95577 1.02085 1.00953 1.23591 0.96133 0.99507 0.99153 1.21117 0.91974 0.95780 0.90411 1.46032 1.13542 1.46612 1.09960 1.22424 0.94949 1.01620 0.84653 1.59107 0.99153 1.36760 1.21624 1.21627 0.87728 0.93503 1.03291 1.22037 0.98246 0.97536 0.97084 1.20799 0.93948 0.98887 0.99820 1.21301 0.85067 0.94751 0.96581 1.87843 1.14357 1.59999 1.68606 1.22736 0.84877 0.99850 0.98969 1.20454 0.90615 0.99180 1.00957 1.22069 0.99329 0.99011 0.85067 1.74424 0.98514 1.19228 1.25307 1.73968 1.22518 1.16736 1.01733 1.26041 0.81279 0.97341 0.97394 1.16882 0.90968 0.91961 0.85843 1.22063 1.00195 0.97824 0.99209 1.21618 0.96935 0.99466 0.99480 1.20866 1.38091 0.99917 0.96500 0.92647 1.24830 0.94570 0.95146 0.98316 1.69826 1.36399 1.18049 1.27207 0.86558 0.78719 0.80817 0.81754 1.20483 1.21046 1.19934 0.88202 0.87813 0.85448 0.89301 0.85299 0.87553 0.92808 0.85296 0.92358 0.92278 0.94026 0.89555 0.94063 0.89843 0.90145 0.93060 0.88519 0.89105 0.97056 0.93988 0.94643 0.96317 0.89386 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.18 12.48 29.01 0.36 -1.82 16 2 C -0.17 -2.43 8.18 -36.03 -0.29 -2.73 16 3 C 0.13 2.20 4.91 -5.20 -0.03 2.17 16 4 N -0.47 -9.42 2.79 -115.37 -0.32 -9.75 16 5 C 0.32 6.32 7.18 -318.86 -2.29 4.03 16 6 N -0.44 -7.05 4.76 -175.90 -0.84 -7.89 16 7 C 0.06 0.90 5.15 -5.28 -0.03 0.87 16 8 C -0.13 -1.56 9.33 -35.96 -0.34 -1.90 16 9 C -0.13 -1.45 5.89 -100.92 -0.59 -2.04 16 10 C 0.10 0.87 6.28 36.01 0.23 1.09 16 11 O -0.39 -3.77 8.88 -35.23 -0.31 -4.08 16 12 C 0.03 0.20 11.01 101.05 1.11 1.32 16 13 C -0.07 -0.77 6.05 -28.02 -0.17 -0.94 16 14 C 0.07 1.00 5.11 -3.58 -0.02 0.98 16 15 N -0.33 -7.41 11.11 30.32 0.34 -7.08 16 16 N -0.31 -7.64 11.50 32.99 0.38 -7.26 16 17 C 0.25 5.74 6.26 -154.02 -0.96 4.77 16 18 C 0.15 3.49 0.53 -156.82 -0.08 3.41 16 19 C -0.13 -2.98 7.17 37.16 0.27 -2.72 16 20 C -0.12 -2.86 7.74 37.16 0.29 -2.58 16 21 C -0.52 -12.95 6.44 -34.44 -0.22 -13.18 16 22 H 0.06 1.43 7.28 -52.49 -0.38 1.05 16 23 C 0.07 1.87 5.15 -17.82 -0.09 1.78 16 24 N -0.88 -22.44 9.47 55.43 0.52 -21.91 16 25 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.10 1.04 7.03 -52.48 -0.37 0.67 16 30 H 0.10 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.13 2.05 5.77 -52.48 -0.30 1.75 16 32 H 0.09 1.34 7.02 -51.93 -0.36 0.98 16 33 H 0.13 2.42 5.96 -51.93 -0.31 2.11 16 34 H 0.11 1.42 2.11 -51.93 -0.11 1.31 16 35 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.13 1.49 6.54 -52.49 -0.34 1.14 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 45 H 0.10 1.43 7.67 -51.93 -0.40 1.04 16 46 H 0.09 2.17 6.35 -51.93 -0.33 1.84 16 47 H 0.01 0.22 8.12 -51.92 -0.42 -0.20 16 48 H 0.04 0.86 4.65 -51.93 -0.24 0.62 16 49 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 51 H 0.09 2.25 6.08 -51.93 -0.32 1.93 16 52 H 0.26 6.50 8.31 -40.82 -0.34 6.16 16 LS Contribution 394.64 15.07 5.95 5.95 Total: -1.00 -29.31 394.64 -10.26 -39.57 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.09 Total: 5.04 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -2.86 Total: -7.47 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.08 Total: -53.88 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: -0.31 Total: -4.08 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.31 -10.26 -39.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340429097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.920 kcal (2) G-P(sol) polarization free energy of solvation -29.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds