Wall clock time and date at job start Wed Apr 1 2020 04:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00573 * 2 1 4 4 N 1.46498 * 109.47270 * 124.99357 * 3 2 1 5 5 C 1.36452 * 127.13693 * 267.37626 * 4 3 2 6 6 N 1.38584 * 126.47434 * 359.97438 * 5 4 3 7 7 C 1.46843 * 110.99875 * 56.33828 * 6 5 4 8 8 C 1.50143 * 110.27318 * 174.31041 * 7 6 5 9 9 C 1.29819 * 123.28690 * 342.97718 * 8 7 6 10 10 C 1.50699 * 118.55327 * 180.34981 * 9 8 7 11 11 O 1.42897 * 109.47325 * 359.97438 * 10 9 8 12 12 C 1.42901 * 114.00189 * 180.02562 * 11 10 9 13 13 C 1.50312 * 122.89286 * 0.36317 * 9 8 7 14 14 C 1.47241 * 110.99945 * 179.26822 * 6 5 4 15 15 N 1.31225 * 107.05207 * 180.26851 * 5 4 3 16 16 N 1.28527 * 109.85864 * 359.73296 * 15 5 4 17 17 C 1.30300 * 110.05308 * 0.02562 * 16 15 5 18 18 C 1.50696 * 126.34275 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.47290 * 119.25400 * 18 17 16 20 20 C 1.52995 * 109.47558 * 359.24973 * 18 17 16 21 21 C 1.50704 * 109.47041 * 239.25088 * 18 17 16 22 22 H 1.07999 * 119.99973 * 0.02562 * 21 18 17 23 23 C 1.37874 * 120.00153 * 180.27561 * 21 18 17 24 24 N 1.31517 * 119.99980 * 359.72942 * 23 21 18 25 25 Si 1.86797 * 120.00231 * 179.72405 * 23 21 18 26 26 H 1.48501 * 109.47144 * 90.00069 * 25 23 21 27 27 H 1.48499 * 109.47377 * 210.00274 * 25 23 21 28 28 H 1.48498 * 109.47231 * 330.00404 * 25 23 21 29 29 H 1.08003 * 119.99375 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00379 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99375 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46690 * 4.99859 * 3 2 1 33 33 H 1.08999 * 109.47130 * 245.00173 * 3 2 1 34 34 H 1.08995 * 109.33619 * 294.56239 * 7 6 5 35 35 H 1.08999 * 109.33303 * 54.22673 * 7 6 5 36 36 H 1.08001 * 118.35700 * 162.94851 * 8 7 6 37 37 H 1.09004 * 109.47279 * 119.99768 * 10 9 8 38 38 H 1.08997 * 109.46842 * 239.99429 * 10 9 8 39 39 H 1.08996 * 109.46768 * 59.99897 * 12 11 10 40 40 H 1.09001 * 109.47141 * 179.97438 * 12 11 10 41 41 H 1.09001 * 109.47029 * 300.00143 * 12 11 10 42 42 H 1.08996 * 109.42829 * 103.56036 * 13 9 8 43 43 H 1.08997 * 109.43188 * 223.45823 * 13 9 8 44 44 H 1.09005 * 109.63515 * 287.50742 * 14 6 5 45 45 H 1.09005 * 109.63918 * 48.11023 * 14 6 5 46 46 H 1.08998 * 109.47406 * 189.19829 * 19 18 17 47 47 H 1.09007 * 109.47041 * 309.20317 * 19 18 17 48 48 H 1.09006 * 109.47064 * 69.19736 * 19 18 17 49 49 H 1.09004 * 109.47428 * 300.00018 * 20 18 17 50 50 H 1.08998 * 109.46989 * 59.99970 * 20 18 17 51 51 H 1.09001 * 109.47593 * 180.02562 * 20 18 17 52 52 H 0.97004 * 120.00360 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.7612 1.8375 2.3773 6 7 1.5895 2.4304 2.8202 7 6 0.4445 1.5276 2.6462 8 6 -0.7891 2.1285 3.2557 9 6 -0.7584 3.1069 4.1084 10 6 -2.0625 3.6232 4.6595 11 8 -3.1455 2.8820 4.0940 12 6 -4.4344 3.2947 4.5527 13 6 0.5206 3.7477 4.5698 14 6 1.7051 2.8392 4.2300 15 7 3.8587 1.6620 3.0749 16 7 4.7476 1.0805 2.3514 17 6 4.2741 0.8528 1.1590 18 6 5.0045 0.1900 0.0197 19 6 4.2599 -1.0814 -0.3926 20 6 6.4231 -0.1714 0.4645 21 6 5.0711 1.1354 -1.1521 22 1 4.6291 2.1181 -1.0788 23 6 5.6917 0.7439 -2.3193 24 7 6.2303 -0.4526 -2.4084 25 14 5.7675 1.9129 -3.7743 26 1 7.0017 2.7341 -3.6859 27 1 5.7823 1.1315 -5.0370 28 1 4.5787 2.8027 -3.7569 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1316 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 0.2762 1.3590 1.5826 35 1 0.6580 0.5761 3.1331 36 1 -1.7502 1.7269 2.9701 37 1 -2.0699 3.5081 5.7434 38 1 -2.1724 4.6774 4.4054 39 1 -4.5930 4.3421 4.2962 40 1 -5.2020 2.6842 4.0769 41 1 -4.4914 3.1728 5.6343 42 1 0.6454 4.7086 4.0706 43 1 0.4804 3.9019 5.6481 44 1 1.6864 1.9569 4.8699 45 1 2.6381 3.3830 4.3784 46 1 4.8680 -1.6454 -1.0999 47 1 4.0680 -1.6923 0.4895 48 1 3.3132 -0.8123 -0.8612 49 1 6.9536 0.7344 0.7582 50 1 6.3750 -0.8551 1.3120 51 1 6.9515 -0.6504 -0.3597 52 1 6.6667 -0.7282 -3.2298 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340429097.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:52 Heat of formation + Delta-G solvation = 77.306024 kcal Electronic energy + Delta-G solvation = -32107.854443 eV Core-core repulsion = 28110.078566 eV Total energy + Delta-G solvation = -3997.775877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.91281 -40.45504 -38.73518 -37.86395 -36.87334 -35.08114 -33.70152 -33.22999 -31.96651 -30.25352 -28.50505 -27.75496 -27.58639 -27.26692 -26.66580 -25.08130 -24.06516 -23.36004 -21.89083 -21.49831 -20.24563 -18.85021 -18.66123 -18.11734 -17.46955 -17.22244 -16.84835 -16.82763 -16.72452 -16.34690 -15.99360 -15.76741 -15.28875 -15.17707 -14.84916 -14.50271 -14.25862 -13.96270 -13.86576 -13.61600 -13.46252 -13.33211 -13.21591 -12.93765 -12.91663 -12.78724 -12.64557 -12.53152 -12.40015 -12.30102 -12.23497 -11.97527 -11.73892 -11.68610 -11.51337 -11.44099 -11.07877 -10.89372 -10.74263 -10.57159 -10.46320 -10.42193 -9.72544 -9.13585 -8.07101 -6.24124 0.88664 1.04396 1.19922 1.43143 1.47284 1.53749 1.64817 1.98581 2.43815 2.69399 2.81090 3.17044 3.57108 3.67213 3.77494 3.84460 3.89068 4.11231 4.12493 4.27229 4.28860 4.30437 4.36724 4.40353 4.49801 4.54618 4.58621 4.62369 4.62773 4.68190 4.74847 4.85726 4.86166 4.92022 4.95268 4.96130 4.99219 5.08090 5.10776 5.13429 5.35511 5.43213 5.53021 5.55953 5.59991 5.62654 5.69884 5.76310 5.87007 5.98122 6.07491 6.27094 6.31902 6.33749 6.74101 7.43114 7.93904 8.93489 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.002977 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.325977 B = 9403.685698 C = 9991.522650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.199 4.199 3 C 0.131 3.869 4 N -0.466 5.466 5 C 0.336 3.664 6 N -0.441 5.441 7 C 0.071 3.929 8 C -0.148 4.148 9 C -0.125 4.125 10 C 0.099 3.901 11 O -0.413 6.413 12 C 0.027 3.973 13 C -0.068 4.068 14 C 0.069 3.931 15 N -0.361 5.361 16 N -0.344 5.344 17 C 0.229 3.771 18 C 0.144 3.856 19 C -0.120 4.120 20 C -0.106 4.106 21 C -0.522 4.522 22 H 0.044 0.956 23 C 0.040 3.960 24 N -0.895 5.895 25 Si 0.948 3.052 26 H -0.285 1.285 27 H -0.278 1.278 28 H -0.269 1.269 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.039 0.961 36 H 0.137 0.863 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.093 0.907 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.013 0.987 48 H 0.055 0.945 49 H 0.017 0.983 50 H 0.020 0.980 51 H 0.076 0.924 52 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.169 5.930 9.869 24.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.218 4.218 3 C 0.010 3.990 4 N -0.159 5.159 5 C -0.021 4.021 6 N -0.165 5.165 7 C -0.055 4.055 8 C -0.166 4.166 9 C -0.125 4.125 10 C 0.024 3.976 11 O -0.332 6.332 12 C -0.069 4.069 13 C -0.105 4.105 14 C -0.058 4.058 15 N -0.205 5.205 16 N -0.182 5.182 17 C -0.040 4.040 18 C 0.141 3.859 19 C -0.178 4.178 20 C -0.164 4.164 21 C -0.561 4.561 22 H 0.062 0.938 23 C -0.162 4.162 24 N -0.532 5.532 25 Si 0.774 3.226 26 H -0.212 1.212 27 H -0.204 1.204 28 H -0.194 1.194 29 H 0.137 0.863 30 H 0.145 0.855 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.057 0.943 36 H 0.154 0.846 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.063 0.937 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.033 0.967 48 H 0.074 0.926 49 H 0.036 0.964 50 H 0.039 0.961 51 H 0.094 0.906 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.197 6.148 10.511 24.446 hybrid contribution -0.031 -0.007 -1.295 1.295 sum -21.228 6.141 9.216 23.944 Atomic orbital electron populations 1.24185 0.94300 1.04057 0.95768 1.23267 0.97066 0.97555 1.03877 1.21235 0.91538 0.97951 0.88317 1.46166 1.13032 1.45892 1.10840 1.22852 0.95499 0.99515 0.84246 1.59305 0.98121 1.36323 1.22794 1.21616 0.87544 0.92652 1.03696 1.21929 0.97256 0.98871 0.98508 1.21064 0.95164 0.97852 0.98468 1.21350 0.83779 0.95184 0.97324 1.87798 1.15513 1.60659 1.69256 1.22903 0.83658 1.00597 0.99729 1.20469 0.88765 0.98296 1.02950 1.22183 1.00609 0.99275 0.83718 1.74323 0.99442 1.20844 1.25889 1.73859 1.23957 1.17783 1.02569 1.25779 0.82720 0.98509 0.96987 1.16809 0.90652 0.92517 0.85895 1.21887 1.00266 0.96849 0.98813 1.21483 0.97591 0.98422 0.98903 1.20911 1.38331 0.99624 0.97247 0.93819 1.25393 0.94285 0.96350 1.00164 1.69916 1.36580 1.18985 1.27703 0.85718 0.78343 0.79186 0.79365 1.21158 1.20358 1.19379 0.86289 0.85519 0.87185 0.87401 0.87541 0.87190 0.94324 0.84555 0.90623 0.90805 0.93076 0.88818 0.93038 0.89069 0.87163 0.93743 0.89964 0.90875 0.96746 0.92619 0.96361 0.96135 0.90568 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 12.48 67.78 0.85 -2.12 16 2 C -0.20 -5.65 8.18 25.65 0.21 -5.44 16 3 C 0.13 4.40 4.91 85.63 0.42 4.82 16 4 N -0.47 -19.06 2.79 -518.91 -1.45 -20.51 16 5 C 0.34 13.40 7.18 260.11 1.87 15.27 16 6 N -0.44 -13.68 4.76 -710.42 -3.38 -17.06 16 7 C 0.07 1.85 5.15 85.39 0.44 2.29 16 8 C -0.15 -3.15 9.33 26.69 0.25 -2.90 16 9 C -0.13 -2.31 5.89 -15.39 -0.09 -2.40 16 10 C 0.10 1.37 6.28 71.24 0.45 1.82 16 11 O -0.41 -6.66 8.88 -148.98 -1.32 -7.99 16 12 C 0.03 0.26 11.01 113.37 1.25 1.51 16 13 C -0.07 -1.21 6.05 29.76 0.18 -1.03 16 14 C 0.07 1.84 5.11 86.27 0.44 2.28 16 15 N -0.36 -16.66 11.11 -58.00 -0.64 -17.30 16 16 N -0.34 -17.49 11.50 -49.54 -0.57 -18.06 16 17 C 0.23 11.00 6.26 137.64 0.86 11.86 16 18 C 0.14 7.11 0.53 -53.68 -0.03 7.08 16 19 C -0.12 -5.45 7.17 71.98 0.52 -4.94 16 20 C -0.11 -5.41 7.74 71.98 0.56 -4.85 16 21 C -0.52 -26.91 6.44 25.60 0.16 -26.74 16 22 H 0.04 2.31 7.28 -2.91 -0.02 2.29 16 23 C 0.04 2.01 5.15 84.65 0.44 2.44 16 24 N -0.89 -46.44 9.47 21.45 0.20 -46.24 16 25 Si 0.95 40.99 29.54 68.60 2.03 43.02 16 26 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 H 0.12 2.01 7.03 -2.91 -0.02 1.99 16 30 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 31 H 0.11 3.53 5.77 -2.91 -0.02 3.51 16 32 H 0.11 3.11 7.02 -2.38 -0.02 3.09 16 33 H 0.11 4.06 5.96 -2.39 -0.01 4.05 16 34 H 0.11 2.71 2.11 -2.39 -0.01 2.70 16 35 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 36 H 0.14 2.76 6.54 -2.91 -0.02 2.74 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.04 1.24 8.08 -2.38 -0.02 1.22 16 45 H 0.08 2.43 7.67 -2.38 -0.02 2.42 16 46 H 0.07 3.58 6.35 -2.39 -0.02 3.56 16 47 H 0.01 0.60 8.12 -2.38 -0.02 0.58 16 48 H 0.05 2.34 4.65 -2.38 -0.01 2.33 16 49 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.08 4.04 6.08 -2.39 -0.01 4.03 16 52 H 0.27 13.18 8.31 -92.70 -0.77 12.41 16 Total: -1.00 -65.34 394.64 4.55 -60.79 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.92 Total: 24.40 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 8.76 Total: -1.07 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -5.84 Total: -119.16 kcal Atomic # 8 Polarization: -6.66 SS G_CDS: -1.32 Total: -7.99 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -65.34 4.55 -60.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340429097.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.100 kcal (2) G-P(sol) polarization free energy of solvation -65.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds