Wall clock time and date at job start Wed Apr 1 2020 04:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09005 * 109.46821 * 339.76889 * 3 2 1 5 5 C 1.53037 * 109.46482 * 99.74226 * 3 2 1 6 6 C 1.53117 * 109.27988 * 179.19241 * 5 3 2 7 7 C 1.53123 * 109.16173 * 302.34576 * 6 5 3 8 8 C 1.53041 * 109.27918 * 57.65267 * 7 6 5 9 9 N 1.46849 * 109.52100 * 300.82395 * 8 7 6 10 10 C 1.38583 * 110.99718 * 185.83799 * 9 8 7 11 11 N 1.31213 * 126.47098 * 237.99952 * 10 9 8 12 12 N 1.28533 * 109.85481 * 179.82346 * 11 10 9 13 13 C 1.30288 * 110.05825 * 0.44866 * 12 11 10 14 14 C 1.50693 * 126.35171 * 179.76427 * 13 12 11 15 15 C 1.53005 * 109.47059 * 3.81385 * 14 13 12 16 16 C 1.52998 * 109.47470 * 123.81352 * 14 13 12 17 17 C 1.50701 * 109.47230 * 243.81095 * 14 13 12 18 18 H 1.07999 * 120.00083 * 0.02562 * 17 14 13 19 19 C 1.37883 * 120.00118 * 179.97438 * 17 14 13 20 20 N 1.31517 * 119.99632 * 0.02562 * 19 17 14 21 21 Si 1.86795 * 120.00083 * 179.97438 * 19 17 14 22 22 H 1.48504 * 109.47072 * 0.02562 * 21 19 17 23 23 H 1.48511 * 109.46874 * 120.00454 * 21 19 17 24 24 H 1.48491 * 109.47343 * 240.00257 * 21 19 17 25 25 N 1.36449 * 126.46968 * 58.30848 * 10 9 8 26 26 C 1.46508 * 127.14088 * 359.97438 * 25 10 9 27 27 C 1.53000 * 109.47077 * 264.26841 * 26 25 10 28 28 O 1.42895 * 109.47289 * 185.35778 * 27 26 25 29 29 C 1.42897 * 114.00193 * 180.02562 * 28 27 26 30 30 H 4.18731 * 15.04292 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.49862 * 299.13143 * 5 3 2 32 32 H 1.08998 * 109.50379 * 59.24679 * 5 3 2 33 33 H 1.08995 * 109.52361 * 182.43750 * 6 5 3 34 34 H 1.09003 * 109.52611 * 62.24710 * 6 5 3 35 35 H 1.09004 * 109.49863 * 297.71305 * 7 6 5 36 36 H 1.08997 * 109.50415 * 177.59445 * 7 6 5 37 37 H 1.08997 * 109.45919 * 180.80917 * 8 7 6 38 38 H 1.08997 * 109.46123 * 60.83892 * 8 7 6 39 39 H 1.08997 * 109.46811 * 54.03690 * 15 14 13 40 40 H 1.09001 * 109.47228 * 174.04225 * 15 14 13 41 41 H 1.09000 * 109.46669 * 294.04048 * 15 14 13 42 42 H 1.08993 * 109.47343 * 74.55516 * 16 14 13 43 43 H 1.09004 * 109.47440 * 194.56366 * 16 14 13 44 44 H 1.09007 * 109.46955 * 314.55710 * 16 14 13 45 45 H 0.96998 * 119.99977 * 179.97438 * 20 19 17 46 46 H 1.08993 * 109.46543 * 24.26827 * 26 25 10 47 47 H 1.08999 * 109.47067 * 144.27082 * 26 25 10 48 48 H 1.08999 * 109.47121 * 305.36091 * 27 26 25 49 49 H 1.09001 * 109.46950 * 65.35140 * 27 26 25 50 50 H 1.08997 * 109.47076 * 180.02562 * 29 28 27 51 51 H 1.08998 * 109.47328 * 299.99968 * 29 28 27 52 52 H 1.09000 * 109.47008 * 60.00148 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0096 -0.9635 0.3554 5 6 3.1558 0.2450 -1.4221 6 6 4.6868 0.2650 -1.4138 7 6 5.1701 1.3493 -0.4467 8 6 4.6019 1.0730 0.9472 9 7 3.1347 1.0648 0.8862 10 6 2.5856 0.9471 2.1532 11 7 1.7715 0.0045 2.5660 12 7 1.4625 0.2032 3.7977 13 6 2.0485 1.2806 4.2373 14 6 1.9364 1.8553 5.6258 15 6 1.0911 0.9235 6.4966 16 6 3.3331 1.9946 6.2346 17 6 1.2810 3.2106 5.5572 18 1 0.9758 3.6152 4.6035 19 6 1.0701 3.9337 6.7121 20 7 1.4413 3.4408 7.8735 21 14 0.2584 5.6139 6.6269 22 1 -0.0612 5.9382 5.2134 23 1 -0.9931 5.6001 7.4264 24 1 1.1835 6.6389 7.1734 25 7 2.7850 1.7929 3.2052 26 6 3.6161 2.9993 3.2251 27 6 4.9977 2.6576 3.7864 28 8 5.7660 3.8547 3.9227 29 6 7.0809 3.6456 4.4416 30 1 -1.0500 -0.0008 0.0008 31 1 2.8058 -0.5534 -2.0763 32 1 2.7813 1.2028 -1.7834 33 1 5.0537 0.4818 -2.4170 34 1 5.0620 -0.7057 -1.0896 35 1 4.8273 2.3245 -0.7927 36 1 6.2592 1.3398 -0.4042 37 1 4.9325 1.8512 1.6349 38 1 4.9562 0.1038 1.2982 39 1 1.5068 -0.0835 6.4609 40 1 1.0974 1.2829 7.5257 41 1 0.0671 0.9074 6.1236 42 1 3.8461 2.8406 5.7773 43 1 3.2467 2.1593 7.3086 44 1 3.9018 1.0828 6.0515 45 1 1.2932 3.9496 8.6859 46 1 3.7210 3.3849 2.2111 47 1 3.1450 3.7546 3.8542 48 1 4.8866 2.1841 4.7619 49 1 5.5071 1.9742 3.1069 50 1 7.5988 4.6018 4.5151 51 1 7.0135 3.1924 5.4306 52 1 7.6333 2.9831 3.7752 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341278468.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:58 Heat of formation + Delta-G solvation = 108.714075 kcal Electronic energy + Delta-G solvation = -33096.372905 eV Core-core repulsion = 29099.958984 eV Total energy + Delta-G solvation = -3996.413922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.37285 -39.32593 -38.02257 -35.78107 -34.69587 -33.78788 -32.94926 -31.32315 -30.21699 -29.58813 -28.10457 -26.37247 -25.83945 -25.34100 -24.67741 -23.76973 -23.22085 -21.72737 -20.73240 -20.07346 -18.95634 -18.00656 -17.22277 -16.52409 -16.20784 -16.08525 -15.78047 -15.25127 -15.13961 -14.90532 -14.70541 -14.42982 -14.05971 -13.86638 -13.61808 -13.40779 -13.29908 -12.78301 -12.51517 -12.16464 -11.77778 -11.68705 -11.45381 -11.43933 -11.36417 -11.20441 -11.06020 -11.00458 -10.90599 -10.77631 -10.73472 -10.58519 -10.37419 -10.27728 -10.11369 -9.91787 -9.88494 -9.65678 -9.44136 -9.33633 -9.15630 -8.89528 -8.48397 -7.58504 -6.12809 -4.22679 2.39041 2.66694 3.10125 3.22550 3.23194 3.32189 3.36322 3.64898 3.83741 4.22936 4.33680 4.41001 4.54806 4.70134 4.80731 4.88782 5.04006 5.06444 5.11679 5.15795 5.25657 5.30289 5.35360 5.39338 5.42818 5.50383 5.51917 5.62151 5.64017 5.66903 5.76754 5.81924 5.90512 5.94864 6.03199 6.08975 6.20439 6.25735 6.54069 6.61436 6.65835 6.79821 6.92916 7.01776 7.11230 7.22094 7.29811 7.48994 7.59293 7.77694 7.87453 8.01027 8.02314 8.20357 8.74400 9.43093 9.61382 10.89911 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010923 B = 0.004404 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.686688 B = 6356.432133 C = 7696.677656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.166 4.166 3 C 0.220 3.780 4 H 0.074 0.926 5 C -0.109 4.109 6 C -0.123 4.123 7 C -0.116 4.116 8 C 0.040 3.960 9 N -0.443 5.443 10 C 0.318 3.682 11 N -0.315 5.315 12 N -0.310 5.310 13 C 0.248 3.752 14 C 0.145 3.855 15 C -0.114 4.114 16 C -0.134 4.134 17 C -0.513 4.513 18 H 0.056 0.944 19 C 0.075 3.925 20 N -0.879 5.879 21 Si 0.894 3.106 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.282 1.282 25 N -0.470 5.470 26 C 0.112 3.888 27 C 0.026 3.974 28 O -0.382 6.382 29 C 0.034 3.966 30 H 0.213 0.787 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.017 0.983 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.088 0.912 44 H 0.008 0.992 45 H 0.262 0.738 46 H 0.093 0.907 47 H 0.125 0.875 48 H 0.085 0.915 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.044 0.956 52 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.286 -2.800 -13.640 17.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.113 3.887 4 H 0.091 0.909 5 C -0.147 4.147 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.086 4.086 9 N -0.167 5.167 10 C -0.038 4.038 11 N -0.158 5.158 12 N -0.147 5.147 13 C -0.020 4.020 14 C 0.142 3.858 15 C -0.172 4.172 16 C -0.192 4.192 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.128 4.128 20 N -0.516 5.516 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.208 1.208 25 N -0.166 5.166 26 C -0.012 4.012 27 C -0.051 4.051 28 O -0.300 6.300 29 C -0.063 4.063 30 H 0.230 0.770 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.027 0.973 45 H 0.073 0.927 46 H 0.111 0.889 47 H 0.143 0.857 48 H 0.103 0.897 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.063 0.937 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.247 -3.377 -13.738 17.468 hybrid contribution 0.471 1.249 0.349 1.380 sum 10.718 -2.128 -13.388 17.281 Atomic orbital electron populations 1.24645 0.95625 0.99511 1.00299 1.22047 0.93295 1.01044 1.00303 1.18301 0.85654 0.92259 0.92464 0.90884 1.21659 0.95480 1.03452 0.94072 1.21632 0.95280 0.99185 0.99912 1.21622 1.00078 1.00136 0.93563 1.22653 0.84702 1.01993 0.99292 1.58636 1.07543 1.46531 1.04011 1.22315 1.02528 0.91484 0.87496 1.74532 1.15542 1.19920 1.05827 1.74007 1.22663 1.15486 1.02542 1.26073 0.90823 0.91554 0.93513 1.16910 0.94311 0.94369 0.80161 1.21610 0.98304 0.95197 1.02097 1.22158 0.95744 0.96797 1.04511 1.20875 1.40471 1.00258 0.93542 0.92619 1.24815 0.94869 0.97922 0.95162 1.69860 1.46412 1.37529 0.97819 0.86493 0.79262 0.83780 0.78302 1.19812 1.20809 1.20827 1.45900 1.38379 1.21960 1.10314 1.21573 0.89426 0.86255 1.03977 1.23462 0.91512 0.87734 1.02383 1.87817 1.26172 1.30432 1.85584 1.22740 0.83589 1.02192 0.97774 0.77039 0.90418 0.90405 0.91010 0.91767 0.90502 0.90757 0.89023 0.93633 0.96376 0.89648 0.94431 0.93380 0.89374 0.97256 0.92740 0.88893 0.85715 0.89696 0.93539 0.89467 0.93692 0.94389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 19.24 29.55 0.57 -2.34 16 2 C -0.17 -2.75 10.40 -37.13 -0.39 -3.13 16 3 C 0.22 3.14 2.02 -70.51 -0.14 2.99 16 4 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 5 C -0.11 -1.11 5.33 -26.65 -0.14 -1.26 16 6 C -0.12 -1.01 6.00 -26.61 -0.16 -1.17 16 7 C -0.12 -1.05 6.09 -26.65 -0.16 -1.21 16 8 C 0.04 0.50 5.12 -3.83 -0.02 0.48 16 9 N -0.44 -6.89 4.49 -170.18 -0.76 -7.65 16 10 C 0.32 6.22 6.68 -318.88 -2.13 4.09 16 11 N -0.31 -7.02 9.91 30.31 0.30 -6.72 16 12 N -0.31 -7.54 11.48 32.99 0.38 -7.16 16 13 C 0.25 5.73 6.23 -154.02 -0.96 4.77 16 14 C 0.15 3.48 0.53 -156.81 -0.08 3.39 16 15 C -0.11 -2.78 7.66 37.16 0.28 -2.50 16 16 C -0.13 -2.95 6.40 37.16 0.24 -2.71 16 17 C -0.51 -13.14 6.64 -34.44 -0.23 -13.37 16 18 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 19 C 0.08 1.92 5.15 -17.82 -0.09 1.83 16 20 N -0.88 -22.66 9.63 55.43 0.53 -22.12 16 21 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 N -0.47 -9.44 2.81 -114.09 -0.32 -9.76 16 26 C 0.11 1.94 4.71 -4.04 -0.02 1.92 16 27 C 0.03 0.40 5.16 37.16 0.19 0.59 16 28 O -0.38 -5.64 10.70 -35.23 -0.38 -6.02 16 29 C 0.03 0.37 11.01 101.05 1.11 1.48 16 30 H 0.21 2.71 7.80 -54.09 -0.42 2.29 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.16 3.13 -51.93 -0.16 1.00 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 40 H 0.08 2.16 6.16 -51.93 -0.32 1.84 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 1.02 4.90 -51.93 -0.25 0.76 16 43 H 0.09 2.09 6.46 -51.93 -0.34 1.75 16 44 H 0.01 0.18 7.56 -51.93 -0.39 -0.21 16 45 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 46 H 0.09 1.46 7.42 -51.93 -0.39 1.07 16 47 H 0.12 2.46 6.40 -51.93 -0.33 2.13 16 48 H 0.09 1.44 4.26 -51.93 -0.22 1.22 16 49 H 0.05 0.63 5.76 -51.93 -0.30 0.33 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 395.85 15.07 5.97 5.97 Total: -1.00 -30.25 395.85 -9.59 -39.84 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -8.15 Total: 4.39 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.13 Total: -6.12 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.13 Total: -53.41 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.38 Total: -6.02 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.25 -9.59 -39.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341278468.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.554 kcal (2) G-P(sol) polarization free energy of solvation -30.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds