Wall clock time and date at job start Wed Apr 1 2020 04:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 H 1.08997 * 109.45198 * 125.26415 * 3 2 1 5 5 C 1.53036 * 109.45989 * 5.28537 * 3 2 1 6 6 C 1.53125 * 109.27293 * 180.80306 * 5 3 2 7 7 C 1.53126 * 109.15628 * 57.65996 * 6 5 3 8 8 C 1.53037 * 109.27534 * 302.33875 * 7 6 5 9 9 N 1.46845 * 109.52335 * 59.18684 * 8 7 6 10 10 C 1.38581 * 111.00199 * 174.15571 * 9 8 7 11 11 N 1.31220 * 126.47397 * 231.10051 * 10 9 8 12 12 N 1.28528 * 109.85841 * 179.97438 * 11 10 9 13 13 C 1.30291 * 110.05327 * 0.02562 * 12 11 10 14 14 C 1.50701 * 126.34608 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47221 * 245.38583 * 14 13 12 16 16 C 1.53003 * 109.47288 * 125.38157 * 14 13 12 17 17 C 1.50702 * 109.47209 * 5.38089 * 14 13 12 18 18 H 1.08004 * 120.00180 * 123.80352 * 17 14 13 19 19 C 1.37873 * 119.99986 * 303.81398 * 17 14 13 20 20 N 1.31513 * 120.00259 * 357.53833 * 19 17 14 21 21 Si 1.86808 * 120.00162 * 177.54175 * 19 17 14 22 22 H 1.48502 * 109.46710 * 0.02562 * 21 19 17 23 23 H 1.48493 * 109.46956 * 239.99759 * 21 19 17 24 24 H 1.48496 * 109.46732 * 119.99580 * 21 19 17 25 25 N 1.36451 * 126.47177 * 51.40987 * 10 9 8 26 26 C 1.46501 * 127.13990 * 0.02562 * 25 10 9 27 27 C 1.53005 * 109.46997 * 269.65162 * 26 25 10 28 28 O 1.42900 * 109.46841 * 185.21609 * 27 26 25 29 29 C 1.42906 * 113.99614 * 180.02562 * 28 27 26 30 30 H 4.18714 * 15.04332 * 359.97438 * 4 2 1 31 31 H 1.09001 * 109.50032 * 60.87144 * 5 3 2 32 32 H 1.08997 * 109.53867 * 300.76280 * 5 3 2 33 33 H 1.08998 * 109.52814 * 297.75576 * 6 5 3 34 34 H 1.09003 * 109.57258 * 177.59234 * 6 5 3 35 35 H 1.09004 * 109.49748 * 182.40537 * 7 6 5 36 36 H 1.08996 * 109.53746 * 62.30467 * 7 6 5 37 37 H 1.09000 * 109.46518 * 299.16462 * 8 7 6 38 38 H 1.09006 * 109.45984 * 179.19634 * 8 7 6 39 39 H 1.09000 * 109.47402 * 185.18063 * 15 14 13 40 40 H 1.09001 * 109.46482 * 305.17414 * 15 14 13 41 41 H 1.08996 * 109.47144 * 65.17218 * 15 14 13 42 42 H 1.08998 * 109.47178 * 309.35560 * 16 14 13 43 43 H 1.09000 * 109.46926 * 69.35903 * 16 14 13 44 44 H 1.09003 * 109.47088 * 189.35635 * 16 14 13 45 45 H 0.97003 * 119.99618 * 5.46627 * 20 19 17 46 46 H 1.08999 * 109.47014 * 29.64759 * 26 25 10 47 47 H 1.08993 * 109.47210 * 149.65009 * 26 25 10 48 48 H 1.09001 * 109.46858 * 305.21429 * 27 26 25 49 49 H 1.09003 * 109.47108 * 65.21777 * 27 26 25 50 50 H 1.09004 * 109.46693 * 179.97438 * 29 28 27 51 51 H 1.08995 * 109.46566 * 299.99370 * 29 28 27 52 52 H 1.08996 * 109.47226 * 60.00007 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 0.5942 -0.8392 5 6 3.1565 -1.4359 -0.1329 6 6 4.6876 -1.4322 -0.1123 7 6 5.1711 -0.7790 1.1856 8 6 4.6021 0.6385 1.2802 9 7 3.1350 0.5809 1.2573 10 6 2.5853 1.8347 1.4725 11 7 1.6606 2.1406 2.3518 12 7 1.3868 3.3943 2.2793 13 6 2.1141 3.9578 1.3568 14 6 2.0904 5.4130 0.9657 15 6 1.5754 5.5472 -0.4687 16 6 3.5053 5.9883 1.0556 17 6 1.1804 6.1693 1.8989 18 1 1.5570 7.0182 2.4503 19 6 -0.1330 5.7775 2.0489 20 7 -0.6048 4.7741 1.3416 21 14 -1.2424 6.6719 3.2568 22 1 -0.4765 7.7557 3.9231 23 1 -1.7361 5.7138 4.2782 24 1 -2.3964 7.2575 2.5285 25 7 2.8992 2.9833 0.8060 26 6 3.8770 3.1404 -0.2736 27 6 5.2432 3.4867 0.3220 28 8 6.1676 3.7590 -0.7331 29 6 7.4815 4.0947 -0.2824 30 1 -1.0500 -0.0007 0.0002 31 1 2.8064 -1.8609 -1.0736 32 1 2.7828 -2.0339 0.6982 33 1 5.0621 -0.8671 -0.9659 34 1 5.0560 -2.4568 -0.1637 35 1 6.2602 -0.7348 1.1869 36 1 4.8296 -1.3660 2.0382 37 1 4.9557 1.2290 0.4350 38 1 4.9328 1.1012 2.2101 39 1 1.6447 6.5884 -0.7838 40 1 2.1789 4.9264 -1.1309 41 1 0.5359 5.2224 -0.5134 42 1 3.9352 5.7457 2.0274 43 1 4.1232 5.5582 0.2673 44 1 3.4655 7.0711 0.9360 45 1 -0.0103 4.2592 0.7738 46 1 3.9511 2.2090 -0.8351 47 1 3.5573 3.9417 -0.9396 48 1 5.1493 4.3663 0.9589 49 1 5.6050 2.6462 0.9142 50 1 8.1228 4.2864 -1.1427 51 1 7.4344 4.9867 0.3421 52 1 7.8895 3.2665 0.2970 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341278469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:04 Heat of formation + Delta-G solvation = 122.784524 kcal Electronic energy + Delta-G solvation = -33734.432166 eV Core-core repulsion = 29738.628385 eV Total energy + Delta-G solvation = -3995.803781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.34679 -39.38268 -38.21769 -36.07123 -34.78566 -33.65992 -33.00530 -31.01619 -30.29335 -29.66752 -28.27464 -26.55453 -26.42340 -24.68329 -24.47857 -23.77256 -23.35675 -21.73104 -20.66154 -20.22884 -19.15755 -18.44618 -17.15514 -16.73977 -16.38226 -16.25357 -15.85488 -15.41997 -15.12822 -14.79113 -14.55780 -14.26296 -14.07281 -13.77690 -13.67351 -13.61423 -13.26929 -12.91572 -12.81307 -12.58779 -12.22570 -11.87844 -11.65016 -11.55704 -11.30913 -11.17294 -11.12788 -10.99176 -10.83323 -10.80192 -10.63942 -10.52405 -10.27551 -10.19022 -10.10915 -9.99177 -9.97884 -9.75135 -9.43198 -9.37741 -8.74791 -8.42276 -8.19835 -7.84197 -6.12017 -3.97345 2.46994 2.69915 2.91277 3.11233 3.54829 3.63442 3.71445 3.73303 3.94274 4.00146 4.36172 4.49737 4.59368 4.66961 4.67684 4.79446 4.86085 4.96217 5.01448 5.09687 5.12680 5.15926 5.24273 5.33636 5.38412 5.42684 5.44217 5.47205 5.60842 5.63733 5.66995 5.73474 5.82800 5.91802 5.94259 6.07924 6.12619 6.19498 6.21882 6.30862 6.42649 6.58791 6.62775 6.65989 6.82533 6.83287 6.86426 7.10047 7.32893 7.43179 7.85808 7.92353 8.17780 8.50913 8.97065 9.78258 9.91438 11.18067 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.005024 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.281241 B = 5572.279516 C = 7337.568770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.197 4.197 3 C 0.205 3.795 4 H 0.059 0.941 5 C -0.106 4.106 6 C -0.122 4.122 7 C -0.116 4.116 8 C 0.042 3.958 9 N -0.429 5.429 10 C 0.295 3.705 11 N -0.264 5.264 12 N -0.244 5.244 13 C 0.231 3.769 14 C 0.129 3.871 15 C -0.142 4.142 16 C -0.132 4.132 17 C -0.596 4.596 18 H 0.056 0.944 19 C 0.048 3.952 20 N -0.878 5.878 21 Si 1.072 2.928 22 H -0.292 1.292 23 H -0.286 1.286 24 H -0.291 1.291 25 N -0.507 5.507 26 C 0.105 3.895 27 C 0.027 3.973 28 O -0.387 6.387 29 C 0.033 3.967 30 H 0.217 0.783 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.052 0.948 40 H 0.015 0.985 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.037 0.963 44 H 0.059 0.941 45 H 0.274 0.726 46 H 0.085 0.915 47 H 0.109 0.891 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.088 0.912 51 H 0.044 0.956 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.252 -9.325 -6.712 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.197 4.197 3 C 0.098 3.902 4 H 0.077 0.923 5 C -0.144 4.144 6 C -0.160 4.160 7 C -0.154 4.154 8 C -0.085 4.085 9 N -0.153 5.153 10 C -0.058 4.058 11 N -0.105 5.105 12 N -0.081 5.081 13 C -0.035 4.035 14 C 0.126 3.874 15 C -0.200 4.200 16 C -0.190 4.190 17 C -0.634 4.634 18 H 0.074 0.926 19 C -0.162 4.162 20 N -0.512 5.512 21 Si 0.901 3.099 22 H -0.218 1.218 23 H -0.212 1.212 24 H -0.218 1.218 25 N -0.208 5.208 26 C -0.019 4.019 27 C -0.050 4.050 28 O -0.305 6.305 29 C -0.063 4.063 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.127 0.873 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.107 0.893 51 H 0.063 0.937 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.487 -9.786 -4.832 16.584 hybrid contribution 2.742 0.458 -1.862 3.346 sum 15.229 -9.328 -6.694 19.072 Atomic orbital electron populations 1.24862 0.95786 0.98792 0.98215 1.22222 0.93510 1.01976 1.02023 1.18560 0.85561 0.96463 0.89647 0.92320 1.21619 0.95434 0.94157 1.03190 1.21633 0.95225 1.01362 0.97773 1.21620 0.99897 0.95033 0.98852 1.22672 0.85271 0.98421 1.02159 1.58928 1.07346 1.14884 1.34127 1.22689 1.01387 0.83889 0.97825 1.74588 1.10352 1.08574 1.17032 1.74653 1.18879 0.97872 1.16661 1.26750 0.89348 0.94342 0.93050 1.16988 0.94056 0.81807 0.94572 1.22102 1.02301 0.99980 0.95654 1.22029 0.96616 1.01149 0.99206 1.21529 0.97122 1.15910 1.28792 0.92621 1.25525 0.96632 0.96459 0.97555 1.70653 1.39082 1.17295 1.24199 0.83521 0.75209 0.75095 0.76078 1.21800 1.21210 1.21758 1.47383 1.32860 1.10363 1.30152 1.21620 0.86983 1.04232 0.89112 1.23402 0.89138 1.01760 0.90708 1.87795 1.20481 1.90204 1.32035 1.22764 0.83536 0.99236 1.00808 0.76571 0.90645 0.90063 0.91924 0.90935 0.90904 0.90364 0.92981 0.89893 0.92880 0.96625 0.91105 0.93905 0.94458 0.92235 0.91162 0.89684 0.87253 0.90692 0.92126 0.89328 0.93706 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 19.25 29.55 0.57 -2.20 16 2 C -0.20 -3.49 11.67 -37.12 -0.43 -3.92 16 3 C 0.20 3.06 2.15 -70.51 -0.15 2.90 16 4 H 0.06 0.86 6.21 -51.93 -0.32 0.54 16 5 C -0.11 -1.17 5.33 -26.65 -0.14 -1.31 16 6 C -0.12 -1.06 6.00 -26.60 -0.16 -1.22 16 7 C -0.12 -1.10 6.09 -26.65 -0.16 -1.27 16 8 C 0.04 0.53 3.89 -3.84 -0.01 0.52 16 9 N -0.43 -7.10 4.55 -170.18 -0.77 -7.88 16 10 C 0.30 6.13 5.59 -318.87 -1.78 4.35 16 11 N -0.26 -6.72 12.23 30.31 0.37 -6.35 16 12 N -0.24 -6.69 9.21 32.99 0.30 -6.39 16 13 C 0.23 5.58 4.94 -154.02 -0.76 4.82 16 14 C 0.13 3.06 0.50 -156.81 -0.08 2.98 16 15 C -0.14 -3.19 8.11 37.16 0.30 -2.88 16 16 C -0.13 -2.61 6.97 37.16 0.26 -2.36 16 17 C -0.60 -16.24 7.81 -34.44 -0.27 -16.51 16 18 H 0.06 1.52 7.75 -52.48 -0.41 1.11 16 19 C 0.05 1.36 4.56 -17.82 -0.08 1.28 16 20 N -0.88 -26.32 11.79 55.43 0.65 -25.67 16 21 Si 1.07 26.13 29.90 -169.99 -5.08 21.05 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 N -0.51 -10.10 2.80 -114.08 -0.32 -10.42 16 26 C 0.11 1.66 4.63 -4.04 -0.02 1.64 16 27 C 0.03 0.37 5.02 37.16 0.19 0.56 16 28 O -0.39 -4.86 10.70 -35.23 -0.38 -5.24 16 29 C 0.03 0.30 11.01 101.05 1.11 1.41 16 30 H 0.22 3.19 7.80 -54.09 -0.42 2.77 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.63 3.77 -51.93 -0.20 0.44 16 38 H 0.08 1.12 7.87 -51.93 -0.41 0.71 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.01 0.30 5.57 -51.93 -0.29 0.01 16 41 H 0.07 1.81 5.56 -51.93 -0.29 1.52 16 42 H 0.04 0.85 7.84 -51.93 -0.41 0.45 16 43 H 0.04 0.64 4.57 -51.93 -0.24 0.40 16 44 H 0.06 1.14 8.11 -51.93 -0.42 0.71 16 45 H 0.27 8.20 3.99 -40.82 -0.16 8.04 16 46 H 0.08 1.20 5.05 -51.93 -0.26 0.94 16 47 H 0.11 1.80 4.84 -51.93 -0.25 1.54 16 48 H 0.08 1.13 5.17 -51.93 -0.27 0.86 16 49 H 0.06 0.76 5.07 -51.93 -0.26 0.50 16 50 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -34.34 386.60 -8.65 -42.99 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.63 Total: 3.28 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.63 Total: -11.22 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.23 Total: -56.69 kcal Atomic # 8 Polarization: -4.86 SS G_CDS: -0.38 Total: -5.24 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -5.08 Total: 21.05 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.34 -8.65 -42.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341278469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.776 kcal (2) G-P(sol) polarization free energy of solvation -34.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds