Wall clock time and date at job start Wed Apr 1 2020 04:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08999 * 109.50361 * 327.76155 * 3 2 1 5 5 C 1.53115 * 109.50372 * 207.67652 * 3 2 1 6 6 C 1.53120 * 109.16122 * 182.36611 * 5 3 2 7 7 C 1.53031 * 109.27653 * 57.65857 * 6 5 3 8 8 N 1.46848 * 109.52511 * 300.81661 * 7 6 5 9 9 C 1.38582 * 111.00396 * 185.83975 * 8 7 6 10 10 N 1.31210 * 126.47138 * 299.65096 * 9 8 7 11 11 N 1.28530 * 109.86020 * 180.02562 * 10 9 8 12 12 C 1.30297 * 110.05097 * 359.71208 * 11 10 9 13 13 C 1.50704 * 126.34820 * 180.31181 * 12 11 10 14 14 C 1.53002 * 109.46853 * 358.26702 * 13 12 11 15 15 C 1.52998 * 109.47063 * 118.26699 * 13 12 11 16 16 C 1.50697 * 109.47086 * 238.26706 * 13 12 11 17 17 H 1.08002 * 120.00458 * 356.62779 * 16 13 12 18 18 C 1.37883 * 119.99720 * 176.62825 * 16 13 12 19 19 N 1.31510 * 120.00080 * 3.76504 * 18 16 13 20 20 Si 1.86800 * 119.99676 * 183.76462 * 18 16 13 21 21 H 1.48498 * 109.47249 * 94.93782 * 20 18 16 22 22 H 1.48505 * 109.46996 * 214.93662 * 20 18 16 23 23 H 1.48505 * 109.47252 * 334.93570 * 20 18 16 24 24 N 1.36448 * 126.47188 * 119.69060 * 9 8 7 25 25 C 1.46501 * 127.13924 * 359.96149 * 24 9 8 26 26 C 1.52998 * 109.47580 * 264.78422 * 25 24 9 27 27 O 1.42900 * 109.47140 * 185.42796 * 26 25 24 28 28 C 1.42901 * 114.00034 * 179.97438 * 27 26 25 29 29 C 1.46851 * 111.19580 * 61.74461 * 8 7 6 30 30 H 4.18787 * 15.03150 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.52195 * 62.46031 * 5 3 2 32 32 H 1.09000 * 109.52751 * 302.27303 * 5 3 2 33 33 H 1.09000 * 109.50353 * 297.71444 * 6 5 3 34 34 H 1.08998 * 109.53716 * 177.61554 * 6 5 3 35 35 H 1.09004 * 109.46456 * 180.80472 * 7 6 5 36 36 H 1.09005 * 109.46085 * 60.83140 * 7 6 5 37 37 H 1.08993 * 109.47192 * 59.54555 * 14 13 12 38 38 H 1.09000 * 109.46466 * 179.54793 * 14 13 12 39 39 H 1.08998 * 109.46873 * 299.53989 * 14 13 12 40 40 H 1.09001 * 109.47282 * 77.92875 * 15 13 12 41 41 H 1.09000 * 109.47285 * 197.93066 * 15 13 12 42 42 H 1.09002 * 109.46954 * 317.92700 * 15 13 12 43 43 H 0.97000 * 119.99626 * 180.02562 * 19 18 16 44 44 H 1.09009 * 109.46679 * 24.78645 * 25 24 9 45 45 H 1.08998 * 109.47373 * 144.77746 * 25 24 9 46 46 H 1.09003 * 109.46644 * 305.42681 * 26 25 24 47 47 H 1.08998 * 109.47359 * 65.42785 * 26 25 24 48 48 H 1.09001 * 109.47138 * 300.00855 * 28 27 26 49 49 H 1.09002 * 109.46958 * 59.99832 * 28 27 26 50 50 H 1.08994 * 109.47369 * 179.97438 * 28 27 26 51 51 H 1.09006 * 109.46273 * 58.27397 * 29 8 7 52 52 H 1.08994 * 109.46649 * 178.24018 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0103 -0.8682 0.5481 5 6 3.1566 1.2790 0.6704 6 6 4.6866 1.2997 0.6134 7 6 5.1391 1.2084 -0.8456 8 7 4.6261 -0.0316 -1.4419 9 6 5.1248 -0.2105 -2.7224 10 7 4.9581 0.5958 -3.7440 11 7 5.5568 0.1208 -4.7774 12 6 6.1412 -1.0044 -4.4772 13 6 6.9505 -1.8674 -5.4108 14 6 6.9549 -1.2429 -6.8075 15 6 8.3867 -1.9706 -4.8936 16 6 6.3406 -3.2439 -5.4778 17 1 5.4882 -3.4875 -4.8610 18 6 6.8709 -4.1922 -6.3268 19 7 7.9530 -3.9201 -7.0228 20 14 6.0521 -5.8634 -6.4882 21 1 5.1277 -5.8516 -7.6503 22 1 7.0902 -6.9056 -6.6920 23 1 5.2875 -6.1617 -5.2505 24 7 5.8814 -1.2586 -3.1591 25 6 6.3284 -2.4135 -2.3763 26 6 7.7393 -2.1538 -1.8443 27 8 8.2246 -3.3272 -1.1887 28 6 9.5422 -3.1907 -0.6528 29 6 3.1577 -0.0531 -1.4413 30 1 -1.0500 -0.0005 0.0009 31 1 2.8304 1.3003 1.7102 32 1 2.7608 2.1486 0.1457 33 1 5.0830 0.4513 1.1713 34 1 5.0552 2.2273 1.0513 35 1 6.2283 1.2085 -0.8887 36 1 4.7537 2.0644 -1.3996 37 1 7.3886 -0.2442 -6.7576 38 1 7.5469 -1.8629 -7.4807 39 1 5.9324 -1.1769 -7.1792 40 1 8.4259 -2.6830 -4.0695 41 1 9.0391 -2.3097 -5.6983 42 1 8.7183 -0.9927 -4.5447 43 1 8.3258 -4.5872 -7.6202 44 1 5.6477 -2.5707 -1.5395 45 1 6.3365 -3.3006 -3.0096 46 1 8.3997 -1.9017 -2.6740 47 1 7.7137 -1.3260 -1.1357 48 1 10.2398 -2.9601 -1.4580 49 1 9.5545 -2.3842 0.0804 50 1 9.8372 -4.1231 -0.1717 51 1 2.7817 0.8089 -1.9926 52 1 2.8077 -0.9691 -1.9171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341387226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:13 Heat of formation + Delta-G solvation = 93.651498 kcal Electronic energy + Delta-G solvation = -32426.038604 eV Core-core repulsion = 28428.971519 eV Total energy + Delta-G solvation = -3997.067084 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.36534 -39.24878 -37.86232 -35.84037 -34.84500 -34.18031 -32.68847 -31.36936 -30.30760 -29.49578 -28.10065 -26.27010 -25.84249 -25.39282 -24.56627 -23.81415 -23.08885 -22.03939 -20.97056 -19.76184 -18.86179 -18.32191 -17.14876 -16.58780 -16.20787 -15.83420 -15.71490 -15.31763 -14.99200 -14.87031 -14.82655 -14.38503 -14.01325 -13.94834 -13.76798 -13.40225 -13.27029 -12.72777 -12.61810 -12.11056 -11.89868 -11.78143 -11.49962 -11.40748 -11.33722 -11.31991 -11.10590 -11.04917 -10.99241 -10.89981 -10.74938 -10.61840 -10.38775 -10.27107 -10.17902 -10.14491 -9.88329 -9.74700 -9.50942 -9.30009 -9.05100 -8.60841 -8.49808 -8.13023 -6.15518 -4.25949 2.35169 2.55802 2.70146 2.81559 3.23026 3.30783 3.32992 3.58791 3.67491 4.14110 4.30688 4.35482 4.62952 4.70461 4.80206 5.06022 5.06790 5.15229 5.18303 5.20373 5.31745 5.36788 5.38688 5.44908 5.49597 5.53656 5.60639 5.67658 5.69763 5.72199 5.83701 5.84880 5.88095 5.89855 5.95001 6.12920 6.14087 6.22127 6.57987 6.64628 6.73883 6.77272 6.78553 7.00668 7.19333 7.21513 7.27995 7.45372 7.47694 7.58319 7.75286 7.83701 8.01315 8.17785 8.69826 9.39756 9.48341 10.87033 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.003706 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.628259 B = 7553.198976 C = 8209.462050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.024 3.976 4 H 0.102 0.898 5 C -0.111 4.111 6 C -0.115 4.115 7 C 0.066 3.934 8 N -0.457 5.457 9 C 0.304 3.696 10 N -0.315 5.315 11 N -0.312 5.312 12 C 0.254 3.746 13 C 0.145 3.855 14 C -0.118 4.118 15 C -0.130 4.130 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.077 3.923 19 N -0.877 5.877 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.274 1.274 24 N -0.454 5.454 25 C 0.115 3.885 26 C 0.040 3.960 27 O -0.384 6.384 28 C 0.035 3.965 29 C 0.078 3.922 30 H 0.217 0.783 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.018 0.982 38 H 0.091 0.909 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.084 0.916 42 H 0.009 0.991 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.078 0.922 47 H 0.044 0.956 48 H 0.043 0.957 49 H 0.037 0.963 50 H 0.085 0.915 51 H 0.055 0.945 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.919 5.653 16.263 17.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C 0.006 3.994 4 H 0.120 0.880 5 C -0.149 4.149 6 C -0.153 4.153 7 C -0.061 4.061 8 N -0.183 5.183 9 C -0.052 4.052 10 N -0.159 5.159 11 N -0.151 5.151 12 C -0.013 4.013 13 C 0.142 3.858 14 C -0.177 4.177 15 C -0.188 4.188 16 C -0.556 4.556 17 H 0.074 0.926 18 C -0.127 4.127 19 N -0.514 5.514 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.198 1.198 24 N -0.147 5.147 25 C -0.009 4.009 26 C -0.037 4.037 27 O -0.302 6.302 28 C -0.062 4.062 29 C -0.050 4.050 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.142 0.858 46 H 0.096 0.904 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.056 0.944 50 H 0.104 0.896 51 H 0.074 0.926 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.183 6.197 15.641 17.123 hybrid contribution -0.396 -1.207 0.294 1.304 sum -3.579 4.990 15.935 17.077 Atomic orbital electron populations 1.24880 0.95865 1.01118 1.00418 1.22863 0.94037 1.00238 1.00599 1.18294 0.84224 1.00173 0.96710 0.88047 1.21614 0.95720 0.96685 1.00879 1.21619 0.95150 1.02783 0.95714 1.22132 1.00120 0.89296 0.94554 1.58365 1.08632 1.37956 1.13313 1.21985 1.01359 0.89543 0.92347 1.74429 1.20328 1.24653 0.96496 1.74061 1.12804 1.09088 1.19165 1.26207 0.98317 0.94695 0.82124 1.16941 0.89443 0.90893 0.88532 1.21647 1.00867 0.97428 0.97711 1.22088 0.98239 0.96784 1.01677 1.20842 1.15195 0.94630 1.24899 0.92574 1.24806 0.94510 0.98456 0.94886 1.69845 1.20081 1.34678 1.26771 0.86535 0.79251 0.83371 0.78665 1.20558 1.21010 1.19830 1.46052 1.39368 1.18536 1.10712 1.21582 0.94438 0.88248 0.96631 1.23098 0.95995 0.87560 0.97062 1.87804 1.31548 1.36009 1.74808 1.22715 0.84002 1.01910 0.97546 1.22043 0.84741 1.02896 0.95276 0.76615 0.91125 0.91422 0.90663 0.90555 0.90610 0.92875 0.96253 0.89061 0.94646 0.93305 0.89764 0.97201 0.92618 0.88748 0.85830 0.90450 0.93747 0.93805 0.94435 0.89616 0.92619 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.09 19.25 29.55 0.57 -1.53 16 2 C -0.18 -2.03 12.56 -37.12 -0.47 -2.50 16 3 C 0.02 0.27 2.73 -93.33 -0.25 0.01 16 4 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 5 C -0.11 -1.02 5.24 -26.61 -0.14 -1.16 16 6 C -0.11 -1.03 6.09 -26.65 -0.16 -1.19 16 7 C 0.07 0.82 5.37 -3.84 -0.02 0.80 16 8 N -0.46 -6.72 4.64 -174.55 -0.81 -7.53 16 9 C 0.30 5.71 6.42 -318.89 -2.05 3.66 16 10 N -0.32 -6.82 12.18 30.31 0.37 -6.45 16 11 N -0.31 -7.40 11.50 32.99 0.38 -7.02 16 12 C 0.25 5.75 6.20 -154.01 -0.95 4.79 16 13 C 0.14 3.41 0.53 -156.81 -0.08 3.32 16 14 C -0.12 -2.85 7.64 37.16 0.28 -2.57 16 15 C -0.13 -2.85 6.65 37.16 0.25 -2.60 16 16 C -0.52 -12.95 6.51 -34.44 -0.22 -13.17 16 17 H 0.06 1.44 6.99 -52.49 -0.37 1.07 16 18 C 0.08 1.93 5.14 -17.82 -0.09 1.84 16 19 N -0.88 -22.36 9.66 55.43 0.54 -21.83 16 20 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 N -0.45 -8.95 2.81 -114.08 -0.32 -9.27 16 25 C 0.11 2.01 5.77 -4.04 -0.02 1.99 16 26 C 0.04 0.64 5.71 37.16 0.21 0.85 16 27 O -0.38 -5.96 10.70 -35.23 -0.38 -6.34 16 28 C 0.04 0.41 11.01 101.05 1.11 1.52 16 29 C 0.08 1.07 4.63 -3.83 -0.02 1.06 16 30 H 0.22 1.44 7.80 -54.09 -0.42 1.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 2.30 5.95 -51.93 -0.31 1.99 16 39 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 1.04 5.31 -51.93 -0.28 0.76 16 41 H 0.08 1.98 6.72 -51.93 -0.35 1.63 16 42 H 0.01 0.19 7.79 -51.93 -0.40 -0.22 16 43 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 44 H 0.09 1.50 8.11 -51.92 -0.42 1.07 16 45 H 0.12 2.44 5.91 -51.93 -0.31 2.13 16 46 H 0.08 1.35 4.43 -51.93 -0.23 1.11 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 409.17 15.07 6.17 6.17 Total: -1.00 -28.78 409.17 -9.70 -38.47 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -8.56 Total: 3.61 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.06 Total: -4.86 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 0.15 Total: -52.10 kcal Atomic # 8 Polarization: -5.96 SS G_CDS: -0.38 Total: -6.34 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -28.78 -9.70 -38.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341387226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.125 kcal (2) G-P(sol) polarization free energy of solvation -28.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds