Wall clock time and date at job start Wed Apr 1 2020 04:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08999 * 109.50361 * 327.76155 * 3 2 1 5 5 C 1.53115 * 109.50372 * 207.67652 * 3 2 1 6 6 C 1.53120 * 109.16122 * 182.36611 * 5 3 2 7 7 C 1.53031 * 109.27653 * 57.65857 * 6 5 3 8 8 N 1.46848 * 109.52511 * 300.81661 * 7 6 5 9 9 C 1.38582 * 111.00396 * 185.83975 * 8 7 6 10 10 N 1.31210 * 126.47138 * 299.65096 * 9 8 7 11 11 N 1.28530 * 109.86020 * 180.02562 * 10 9 8 12 12 C 1.30297 * 110.05097 * 359.71208 * 11 10 9 13 13 C 1.50704 * 126.34820 * 180.31181 * 12 11 10 14 14 C 1.53002 * 109.46853 * 358.26702 * 13 12 11 15 15 C 1.52998 * 109.47063 * 118.26699 * 13 12 11 16 16 C 1.50697 * 109.47086 * 238.26706 * 13 12 11 17 17 H 1.08002 * 120.00458 * 356.62779 * 16 13 12 18 18 C 1.37883 * 119.99720 * 176.62825 * 16 13 12 19 19 N 1.31510 * 120.00080 * 3.76504 * 18 16 13 20 20 Si 1.86800 * 119.99676 * 183.76462 * 18 16 13 21 21 H 1.48498 * 109.47249 * 94.93782 * 20 18 16 22 22 H 1.48505 * 109.46996 * 214.93662 * 20 18 16 23 23 H 1.48505 * 109.47252 * 334.93570 * 20 18 16 24 24 N 1.36448 * 126.47188 * 119.69060 * 9 8 7 25 25 C 1.46501 * 127.13924 * 359.96149 * 24 9 8 26 26 C 1.52998 * 109.47580 * 264.78422 * 25 24 9 27 27 O 1.42900 * 109.47140 * 185.42796 * 26 25 24 28 28 C 1.42901 * 114.00034 * 179.97438 * 27 26 25 29 29 C 1.46851 * 111.19580 * 61.74461 * 8 7 6 30 30 H 4.18787 * 15.03150 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.52195 * 62.46031 * 5 3 2 32 32 H 1.09000 * 109.52751 * 302.27303 * 5 3 2 33 33 H 1.09000 * 109.50353 * 297.71444 * 6 5 3 34 34 H 1.08998 * 109.53716 * 177.61554 * 6 5 3 35 35 H 1.09004 * 109.46456 * 180.80472 * 7 6 5 36 36 H 1.09005 * 109.46085 * 60.83140 * 7 6 5 37 37 H 1.08993 * 109.47192 * 59.54555 * 14 13 12 38 38 H 1.09000 * 109.46466 * 179.54793 * 14 13 12 39 39 H 1.08998 * 109.46873 * 299.53989 * 14 13 12 40 40 H 1.09001 * 109.47282 * 77.92875 * 15 13 12 41 41 H 1.09000 * 109.47285 * 197.93066 * 15 13 12 42 42 H 1.09002 * 109.46954 * 317.92700 * 15 13 12 43 43 H 0.97000 * 119.99626 * 180.02562 * 19 18 16 44 44 H 1.09009 * 109.46679 * 24.78645 * 25 24 9 45 45 H 1.08998 * 109.47373 * 144.77746 * 25 24 9 46 46 H 1.09003 * 109.46644 * 305.42681 * 26 25 24 47 47 H 1.08998 * 109.47359 * 65.42785 * 26 25 24 48 48 H 1.09001 * 109.47138 * 300.00855 * 28 27 26 49 49 H 1.09002 * 109.46958 * 59.99832 * 28 27 26 50 50 H 1.08994 * 109.47369 * 179.97438 * 28 27 26 51 51 H 1.09006 * 109.46273 * 58.27397 * 29 8 7 52 52 H 1.08994 * 109.46649 * 178.24018 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0103 -0.8682 0.5481 5 6 3.1566 1.2790 0.6704 6 6 4.6866 1.2997 0.6134 7 6 5.1391 1.2084 -0.8456 8 7 4.6261 -0.0316 -1.4419 9 6 5.1248 -0.2105 -2.7224 10 7 4.9581 0.5958 -3.7440 11 7 5.5568 0.1208 -4.7774 12 6 6.1412 -1.0044 -4.4772 13 6 6.9505 -1.8674 -5.4108 14 6 6.9549 -1.2429 -6.8075 15 6 8.3867 -1.9706 -4.8936 16 6 6.3406 -3.2439 -5.4778 17 1 5.4882 -3.4875 -4.8610 18 6 6.8709 -4.1922 -6.3268 19 7 7.9530 -3.9201 -7.0228 20 14 6.0521 -5.8634 -6.4882 21 1 5.1277 -5.8516 -7.6503 22 1 7.0902 -6.9056 -6.6920 23 1 5.2875 -6.1617 -5.2505 24 7 5.8814 -1.2586 -3.1591 25 6 6.3284 -2.4135 -2.3763 26 6 7.7393 -2.1538 -1.8443 27 8 8.2246 -3.3272 -1.1887 28 6 9.5422 -3.1907 -0.6528 29 6 3.1577 -0.0531 -1.4413 30 1 -1.0500 -0.0005 0.0009 31 1 2.8304 1.3003 1.7102 32 1 2.7608 2.1486 0.1457 33 1 5.0830 0.4513 1.1713 34 1 5.0552 2.2273 1.0513 35 1 6.2283 1.2085 -0.8887 36 1 4.7537 2.0644 -1.3996 37 1 7.3886 -0.2442 -6.7576 38 1 7.5469 -1.8629 -7.4807 39 1 5.9324 -1.1769 -7.1792 40 1 8.4259 -2.6830 -4.0695 41 1 9.0391 -2.3097 -5.6983 42 1 8.7183 -0.9927 -4.5447 43 1 8.3258 -4.5872 -7.6202 44 1 5.6477 -2.5707 -1.5395 45 1 6.3365 -3.3006 -3.0096 46 1 8.3997 -1.9017 -2.6740 47 1 7.7137 -1.3260 -1.1357 48 1 10.2398 -2.9601 -1.4580 49 1 9.5545 -2.3842 0.0804 50 1 9.8372 -4.1231 -0.1717 51 1 2.7817 0.8089 -1.9926 52 1 2.8077 -0.9691 -1.9171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341387226.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:12 Heat of formation + Delta-G solvation = 79.983233 kcal Electronic energy + Delta-G solvation = -32426.631304 eV Core-core repulsion = 28428.971519 eV Total energy + Delta-G solvation = -3997.659785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.98657 -40.30501 -39.07246 -37.59433 -36.12591 -35.49395 -33.71605 -33.13682 -31.22327 -30.87042 -29.66912 -27.77973 -27.35091 -27.22383 -25.68867 -24.78511 -24.46360 -23.72791 -22.17582 -21.02415 -20.47052 -19.24615 -18.66731 -18.04225 -17.52215 -17.22596 -16.94144 -16.86579 -16.52143 -16.05207 -15.81740 -15.55449 -15.40467 -15.00662 -14.93890 -14.69805 -14.57468 -14.32898 -13.64249 -13.58729 -13.40594 -13.26141 -13.04456 -12.88832 -12.78051 -12.71677 -12.49745 -12.42708 -12.28227 -12.25113 -12.20565 -11.95327 -11.79228 -11.77756 -11.62724 -11.46662 -11.15446 -11.10341 -10.97875 -10.86878 -10.59256 -10.44219 -9.91461 -9.83270 -8.09125 -6.24172 0.80159 1.21137 1.42619 1.46800 1.53411 1.80981 1.88920 1.90690 2.43348 2.50226 3.02669 3.16989 3.44205 3.62689 3.72312 3.78610 3.83200 3.93844 3.97546 4.15151 4.21782 4.24038 4.25428 4.32351 4.40526 4.51083 4.53053 4.58116 4.64038 4.69494 4.73113 4.75139 4.78570 4.84825 4.87563 4.92718 4.96280 5.07655 5.10156 5.12677 5.14320 5.23979 5.33955 5.39370 5.52544 5.54045 5.66506 5.70115 5.92372 6.05532 6.10454 6.23951 6.28555 6.68272 6.73113 7.42872 7.80857 8.92542 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.003706 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.628259 B = 7553.198976 C = 8209.462050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.216 4.216 3 C 0.033 3.967 4 H 0.109 0.891 5 C -0.107 4.107 6 C -0.103 4.103 7 C 0.063 3.937 8 N -0.450 5.450 9 C 0.326 3.674 10 N -0.344 5.344 11 N -0.341 5.341 12 C 0.237 3.763 13 C 0.142 3.858 14 C -0.107 4.107 15 C -0.113 4.113 16 C -0.525 4.525 17 H 0.044 0.956 18 C 0.043 3.957 19 N -0.892 5.892 20 Si 0.944 3.056 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.273 1.273 24 N -0.452 5.452 25 C 0.115 3.885 26 C 0.053 3.947 27 O -0.401 6.401 28 C 0.027 3.973 29 C 0.082 3.918 30 H 0.246 0.754 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.023 0.977 38 H 0.079 0.921 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.018 0.982 43 H 0.265 0.735 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.041 0.959 49 H 0.057 0.943 50 H 0.105 0.895 51 H 0.039 0.961 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 5.592 19.305 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.216 4.216 3 C 0.015 3.985 4 H 0.127 0.873 5 C -0.144 4.144 6 C -0.141 4.141 7 C -0.064 4.064 8 N -0.176 5.176 9 C -0.031 4.031 10 N -0.187 5.187 11 N -0.180 5.180 12 C -0.032 4.032 13 C 0.139 3.861 14 C -0.165 4.165 15 C -0.171 4.171 16 C -0.563 4.563 17 H 0.063 0.937 18 C -0.159 4.159 19 N -0.529 5.529 20 Si 0.771 3.229 21 H -0.210 1.210 22 H -0.203 1.203 23 H -0.198 1.198 24 N -0.145 5.145 25 C -0.007 4.007 26 C -0.024 4.024 27 O -0.320 6.320 28 C -0.069 4.069 29 C -0.046 4.046 30 H 0.262 0.738 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.097 0.903 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.131 0.869 45 H 0.118 0.882 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.060 0.940 49 H 0.076 0.924 50 H 0.124 0.876 51 H 0.057 0.943 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.552 6.140 18.697 19.997 hybrid contribution -0.345 -1.166 -0.594 1.353 sum -3.897 4.974 18.103 19.174 Atomic orbital electron populations 1.25709 0.96787 0.99767 0.98685 1.23178 0.94708 1.01597 1.02145 1.18223 0.84306 1.01598 0.94400 0.87297 1.21613 0.95684 0.95317 1.01801 1.21607 0.94965 1.04573 0.92923 1.22297 0.99984 0.87483 0.96612 1.58691 1.09143 1.39296 1.10482 1.22435 0.99230 0.88196 0.93230 1.74366 1.21504 1.25884 0.96960 1.73964 1.13582 1.09868 1.20544 1.25908 0.99149 0.94786 0.83334 1.16861 0.90384 0.90371 0.88437 1.21502 0.99402 0.97448 0.98176 1.21885 0.96881 0.97290 1.01035 1.20915 1.14927 0.95547 1.24927 0.93736 1.25338 0.94972 1.00880 0.94732 1.69922 1.20636 1.35403 1.26968 0.85755 0.78452 0.80499 0.78217 1.20976 1.20341 1.19767 1.46113 1.39202 1.19109 1.10038 1.21648 0.96234 0.86567 0.96295 1.22852 0.94327 0.88345 0.96923 1.87778 1.33465 1.35843 1.74893 1.22973 0.82131 1.03867 0.97919 1.22014 0.83914 1.01126 0.97500 0.73760 0.88935 0.91971 0.89606 0.88020 0.90798 0.94135 0.95812 0.90261 0.96358 0.92897 0.91448 0.96256 0.92502 0.86899 0.88164 0.92140 0.92034 0.94024 0.92445 0.87648 0.94265 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.51 19.25 74.32 1.43 -2.08 16 2 C -0.22 -4.60 12.56 31.13 0.39 -4.21 16 3 C 0.03 0.67 2.73 -12.55 -0.03 0.63 16 4 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 5 C -0.11 -1.65 5.24 30.67 0.16 -1.49 16 6 C -0.10 -1.52 6.09 30.64 0.19 -1.33 16 7 C 0.06 1.46 5.37 86.32 0.46 1.92 16 8 N -0.45 -12.84 4.64 -706.14 -3.28 -16.12 16 9 C 0.33 12.29 6.42 260.12 1.67 13.96 16 10 N -0.34 -15.19 12.18 -58.01 -0.71 -15.89 16 11 N -0.34 -16.61 11.50 -49.53 -0.57 -17.18 16 12 C 0.24 10.97 6.20 137.64 0.85 11.82 16 13 C 0.14 6.86 0.53 -53.67 -0.03 6.83 16 14 C -0.11 -5.33 7.64 71.98 0.55 -4.78 16 15 C -0.11 -5.02 6.65 71.98 0.48 -4.54 16 16 C -0.52 -26.81 6.51 25.60 0.17 -26.64 16 17 H 0.04 2.34 6.99 -2.91 -0.02 2.32 16 18 C 0.04 2.16 5.14 84.66 0.44 2.60 16 19 N -0.89 -46.01 9.66 21.45 0.21 -45.80 16 20 Si 0.94 41.35 29.54 68.60 2.03 43.37 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 N -0.45 -17.96 2.81 -514.85 -1.45 -19.40 16 25 C 0.12 4.00 5.77 86.38 0.50 4.50 16 26 C 0.05 1.62 5.71 71.98 0.41 2.04 16 27 O -0.40 -11.80 10.70 -148.98 -1.59 -13.40 16 28 C 0.03 0.57 11.01 113.37 1.25 1.82 16 29 C 0.08 2.23 4.63 86.33 0.40 2.63 16 30 H 0.25 2.53 7.80 -4.42 -0.03 2.50 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 36 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 4.11 5.95 -2.39 -0.01 4.10 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 2.28 5.31 -2.39 -0.01 2.26 16 41 H 0.07 3.21 6.72 -2.39 -0.02 3.19 16 42 H 0.02 0.78 7.79 -2.39 -0.02 0.76 16 43 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 44 H 0.11 3.44 8.11 -2.38 -0.02 3.43 16 45 H 0.10 4.00 5.91 -2.39 -0.01 3.99 16 46 H 0.06 2.07 4.43 -2.39 -0.01 2.06 16 47 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 51 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 52 H 0.06 1.85 8.10 -2.39 -0.02 1.83 16 Total: -1.00 -63.39 409.17 4.82 -58.58 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.90 Total: 22.16 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 9.28 Total: 3.68 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -5.79 Total: -114.40 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -1.59 Total: -13.40 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.37 kcal Total: -63.39 4.82 -58.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341387226.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.559 kcal (2) G-P(sol) polarization free energy of solvation -63.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds