Wall clock time and date at job start Wed Apr 1 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00009 * 2 1 4 4 C 1.50696 * 120.00208 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47326 * 91.51419 * 4 2 1 6 6 C 1.36737 * 127.13501 * 92.08338 * 5 4 2 7 7 C 1.50700 * 126.35062 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47195 * 262.43610 * 7 6 5 9 9 H 1.08998 * 109.47274 * 53.92158 * 8 7 6 10 10 O 1.42899 * 109.47070 * 293.91671 * 8 7 6 11 11 C 1.50707 * 109.47123 * 173.92143 * 8 7 6 12 12 H 1.08004 * 119.99707 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00020 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00096 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99945 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47062 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47254 * 120.00027 * 15 13 11 18 18 H 1.48504 * 109.46830 * 239.99874 * 15 13 11 19 19 N 1.30297 * 107.30537 * 180.02562 * 6 5 4 20 20 N 1.28529 * 110.05378 * 0.02562 * 19 6 5 21 21 C 1.31219 * 109.86003 * 359.97438 * 20 19 6 22 22 N 1.38583 * 126.47508 * 179.74231 * 21 20 19 23 23 C 1.48561 * 110.99466 * 349.66098 * 22 21 20 24 24 C 1.54382 * 104.59053 * 159.04267 * 23 22 21 25 25 H 1.09001 * 117.60645 * 115.27918 * 24 23 22 26 26 C 1.54268 * 105.05927 * 336.14683 * 24 23 22 27 27 H 1.09002 * 121.77943 * 137.87304 * 26 24 23 28 28 C 1.48551 * 111.00186 * 105.08230 * 22 21 20 29 29 C 1.52994 * 59.72812 * 245.90465 * 26 24 23 30 30 C 1.52996 * 117.44785 * 252.35469 * 29 26 24 31 31 C 1.53003 * 117.44358 * 107.64452 * 29 26 24 32 32 H 1.08000 * 120.00120 * 0.02562 * 1 2 3 33 33 H 1.07997 * 119.99689 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47542 * 174.73138 * 3 2 1 35 35 H 1.09000 * 109.46898 * 294.73074 * 3 2 1 36 36 H 1.08998 * 109.47120 * 54.72888 * 3 2 1 37 37 H 1.09002 * 109.47161 * 331.51277 * 4 2 1 38 38 H 1.09003 * 109.47191 * 211.51398 * 4 2 1 39 39 H 1.08997 * 109.46851 * 22.43289 * 7 6 5 40 40 H 1.08995 * 109.47275 * 142.43046 * 7 6 5 41 41 H 0.96699 * 114.00302 * 300.00470 * 10 8 7 42 42 H 0.97001 * 120.00024 * 180.02562 * 14 13 11 43 43 H 1.08997 * 110.41441 * 277.81945 * 23 22 21 44 44 H 1.09000 * 110.41304 * 40.26815 * 23 22 21 45 45 H 1.08997 * 110.41344 * 319.74073 * 28 22 21 46 46 H 1.09010 * 110.41364 * 82.18163 * 28 22 21 47 47 H 1.09007 * 109.47497 * 129.22829 * 30 29 26 48 48 H 1.08997 * 109.47316 * 249.22924 * 30 29 26 49 49 H 1.08997 * 109.47301 * 9.22935 * 30 29 26 50 50 H 1.08996 * 109.46909 * 354.31774 * 31 29 26 51 51 H 1.09004 * 109.47018 * 114.31804 * 31 29 26 52 52 H 1.09001 * 109.47201 * 234.31705 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.3393 -1.7091 -1.3814 6 6 3.4562 -1.4248 -2.1173 7 6 4.6496 -0.6276 -1.6578 8 6 4.5174 0.8162 -2.1465 9 1 3.5568 1.2211 -1.8281 10 8 4.5975 0.8454 -3.5730 11 6 5.6311 1.6478 -1.5638 12 1 6.3605 1.1919 -0.9106 13 6 5.7194 2.9902 -1.8655 14 7 4.8321 3.5449 -2.6621 15 14 7.1003 4.0207 -1.1439 16 1 7.9597 3.1658 -0.2862 17 1 7.9149 4.5968 -2.2438 18 1 6.5235 5.1190 -0.3275 19 7 3.2969 -1.9700 -3.2900 20 7 2.1638 -2.5743 -3.3448 21 6 1.5346 -2.4464 -2.2004 22 7 0.2859 -2.9582 -1.8852 23 6 -0.3955 -3.4832 -3.0964 24 6 -1.4564 -4.4635 -2.5517 25 1 -2.5050 -4.2150 -2.7153 26 6 -0.9300 -4.8953 -1.1674 27 1 -1.5895 -4.9817 -0.3039 28 6 0.4046 -4.1395 -0.9923 29 6 -1.0382 -5.9142 -2.3036 30 6 -2.1491 -6.9618 -2.2079 31 6 0.2643 -6.3926 -2.9481 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5399 -0.9353 0.0004 34 1 3.1313 1.1082 0.0944 35 1 1.8728 1.8347 -0.9334 36 1 1.7313 1.9165 0.8390 37 1 1.4630 -2.0716 0.4892 38 1 3.0039 -1.1819 0.5366 39 1 4.6971 -0.6396 -0.5689 40 1 5.5595 -1.0675 -2.0659 41 1 5.4277 0.4990 -3.9275 42 1 4.8945 4.4893 -2.8747 43 1 -0.8737 -2.6720 -3.6453 44 1 0.3151 -4.0083 -3.7348 45 1 1.2404 -4.7672 -1.3013 46 1 0.5288 -3.8224 0.0433 47 1 -2.7132 -6.9796 -3.1405 48 1 -1.7090 -7.9431 -2.0308 49 1 -2.8169 -6.7092 -1.3843 50 1 1.1017 -5.8290 -2.5368 51 1 0.4039 -7.4537 -2.7411 52 1 0.2154 -6.2361 -4.0257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342111053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:10 Heat of formation + Delta-G solvation = 90.871953 kcal Electronic energy + Delta-G solvation = -32147.707992 eV Core-core repulsion = 28150.520377 eV Total energy + Delta-G solvation = -3997.187614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.61559 -40.60616 -36.71606 -36.09940 -35.41170 -33.11066 -32.13878 -31.34675 -29.78871 -28.84403 -28.02171 -27.63606 -27.07610 -26.69103 -25.27546 -23.70878 -21.81850 -20.72882 -20.54670 -19.81938 -18.79305 -18.50081 -17.25478 -16.82600 -16.39689 -15.91785 -15.60360 -14.72318 -14.63839 -14.50928 -14.41385 -14.27772 -14.06749 -13.89721 -13.70358 -13.26429 -13.07746 -12.71620 -12.62031 -12.60993 -12.50569 -12.23316 -12.06746 -11.80335 -11.63957 -11.46399 -11.29332 -11.23555 -11.20347 -11.06691 -11.01036 -10.85873 -10.73751 -10.42880 -10.10867 -9.93931 -9.87220 -9.70199 -9.38612 -9.05601 -8.95199 -8.59742 -8.30733 -7.83614 -6.03875 -4.23541 1.94543 2.22674 2.81449 3.18442 3.23986 3.33237 3.34846 3.39519 3.83122 4.11449 4.30972 4.35189 4.49148 4.62508 4.74586 4.76122 4.82202 4.93868 5.04052 5.13951 5.17581 5.23285 5.25778 5.33637 5.36123 5.41640 5.45453 5.57503 5.59864 5.65697 5.70464 5.76159 5.78685 5.86426 5.90217 5.96369 6.09533 6.11956 6.13950 6.18787 6.21149 6.33332 6.48783 6.49110 6.52534 6.67347 6.77378 6.93801 6.99896 7.47545 7.66501 7.80343 8.10738 8.79256 9.27379 9.42396 9.58091 10.99691 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002837 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.975955 B = 9868.074369 C =10505.079519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.144 4.144 3 C -0.123 4.123 4 C 0.149 3.851 5 N -0.469 5.469 6 C 0.217 3.783 7 C -0.066 4.066 8 C 0.232 3.768 9 H 0.068 0.932 10 O -0.556 6.556 11 C -0.574 4.574 12 H 0.057 0.943 13 C 0.082 3.918 14 N -0.854 5.854 15 Si 0.887 3.113 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.283 1.283 19 N -0.282 5.282 20 N -0.320 5.320 21 C 0.322 3.678 22 N -0.426 5.426 23 C 0.076 3.924 24 C -0.154 4.154 25 H 0.121 0.879 26 C -0.157 4.157 27 H 0.121 0.879 28 C 0.060 3.940 29 C -0.092 4.092 30 C -0.112 4.112 31 C -0.128 4.128 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.347 0.653 42 H 0.260 0.740 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.061 0.939 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.063 -17.371 7.235 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.145 4.145 3 C -0.179 4.179 4 C 0.027 3.973 5 N -0.163 5.163 6 C -0.050 4.050 7 C -0.106 4.106 8 C 0.173 3.827 9 H 0.085 0.915 10 O -0.358 6.358 11 C -0.612 4.612 12 H 0.075 0.925 13 C -0.124 4.124 14 N -0.489 5.489 15 Si 0.714 3.286 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.210 1.210 19 N -0.120 5.120 20 N -0.164 5.164 21 C -0.034 4.034 22 N -0.150 5.150 23 C -0.050 4.050 24 C -0.173 4.173 25 H 0.139 0.861 26 C -0.176 4.176 27 H 0.138 0.862 28 C -0.067 4.067 29 C -0.093 4.093 30 C -0.169 4.169 31 C -0.185 4.185 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.190 0.810 42 H 0.070 0.930 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.080 0.920 46 H 0.105 0.895 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.721 -16.913 6.044 22.602 hybrid contribution 1.269 0.505 1.486 2.019 sum -12.452 -16.408 7.529 21.931 Atomic orbital electron populations 1.23774 0.95139 1.02124 0.99065 1.21905 0.95613 0.95368 1.01636 1.21012 1.01129 0.93397 1.02390 1.20839 1.01619 0.95227 0.79643 1.46258 1.15946 1.40693 1.13402 1.25301 0.90719 1.00415 0.88534 1.21257 0.90233 0.98537 1.00595 1.19565 0.98367 0.85130 0.79610 0.91481 1.86611 1.40320 1.86635 1.22198 1.21626 1.13394 0.94399 1.31746 0.92460 1.25005 0.95522 0.97811 0.94109 1.70096 1.33996 1.11758 1.33097 0.86655 0.82449 0.80417 0.79084 1.19689 1.20861 1.20951 1.74008 1.10239 1.11940 1.15831 1.74478 1.02562 1.21183 1.18156 1.22475 0.91572 0.99940 0.89461 1.62369 1.10452 1.28010 1.14179 1.22527 0.94925 0.97103 0.90472 1.23588 0.99697 0.94569 0.99419 0.86109 1.23574 0.98093 1.02812 0.93128 0.86155 1.22772 0.96633 0.89558 0.97731 1.21688 0.97805 0.90120 0.99676 1.21312 0.96411 0.97172 1.02030 1.21514 0.95034 1.01061 1.00897 0.88205 0.87985 0.90246 0.90638 0.91884 0.89043 0.88225 0.90740 0.89488 0.80971 0.92999 0.89025 0.90359 0.92016 0.89542 0.91773 0.91826 0.92290 0.91935 0.91992 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 13.93 29.01 0.40 -1.74 16 2 C -0.14 -2.10 5.64 -101.07 -0.57 -2.67 16 3 C -0.12 -2.04 8.72 36.01 0.31 -1.72 16 4 C 0.15 2.04 6.13 -5.20 -0.03 2.01 16 5 N -0.47 -8.00 2.79 -115.37 -0.32 -8.33 16 6 C 0.22 4.35 7.11 -154.02 -1.10 3.25 16 7 C -0.07 -1.31 5.25 -27.88 -0.15 -1.46 16 8 C 0.23 5.62 2.33 -27.88 -0.06 5.55 16 9 H 0.07 1.74 5.03 -51.93 -0.26 1.48 16 10 O -0.56 -14.70 12.51 -35.23 -0.44 -15.14 16 11 C -0.57 -14.77 8.76 -34.44 -0.30 -15.07 16 12 H 0.06 1.42 7.74 -52.48 -0.41 1.02 16 13 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 14 N -0.85 -24.54 12.84 55.43 0.71 -23.83 16 15 Si 0.89 20.44 29.54 -169.99 -5.02 15.41 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 N -0.28 -6.21 12.18 32.99 0.40 -5.81 16 20 N -0.32 -6.48 10.93 30.32 0.33 -6.15 16 21 C 0.32 5.54 6.91 -318.87 -2.20 3.33 16 22 N -0.43 -5.76 5.42 -170.10 -0.92 -6.68 16 23 C 0.08 0.96 5.73 -2.18 -0.01 0.95 16 24 C -0.15 -1.44 6.81 -89.23 -0.61 -2.05 16 25 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 26 C -0.16 -1.38 6.71 -89.24 -0.60 -1.98 16 27 H 0.12 0.89 8.13 -51.93 -0.42 0.47 16 28 C 0.06 0.65 5.73 -2.19 -0.01 0.63 16 29 C -0.09 -0.77 2.67 -154.51 -0.41 -1.18 16 30 C -0.11 -0.71 9.84 37.16 0.37 -0.34 16 31 C -0.13 -1.17 8.47 37.16 0.31 -0.86 16 32 H 0.10 1.25 8.05 -52.49 -0.42 0.83 16 33 H 0.10 1.24 8.02 -52.49 -0.42 0.82 16 34 H 0.08 1.42 6.76 -51.93 -0.35 1.07 16 35 H 0.07 1.49 7.43 -51.93 -0.39 1.10 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.02 6.52 -51.93 -0.34 0.68 16 38 H 0.10 1.26 6.97 -51.93 -0.36 0.89 16 39 H 0.07 1.32 7.04 -51.93 -0.37 0.95 16 40 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 41 H 0.35 8.30 9.04 45.56 0.41 8.71 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.09 5.98 -51.93 -0.31 0.78 16 45 H 0.06 0.74 5.63 -51.93 -0.29 0.44 16 46 H 0.09 0.84 6.85 -51.92 -0.36 0.48 16 47 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 48 H 0.06 0.36 7.89 -51.93 -0.41 -0.05 16 49 H 0.06 0.33 7.96 -51.93 -0.41 -0.08 16 50 H 0.06 0.68 5.26 -51.93 -0.27 0.41 16 51 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 52 H 0.07 0.63 7.95 -51.93 -0.41 0.21 16 LS Contribution 408.79 15.07 6.16 6.16 Total: -1.00 -32.14 408.79 -11.30 -43.44 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -7.45 Total: 12.14 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -4.75 Total: -11.22 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.20 Total: -50.80 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.44 Total: -15.14 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.14 -11.30 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342111053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.310 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds