Wall clock time and date at job start Wed Apr 1 2020 05:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 120.00009 * 2 1 4 4 C 1.50696 * 120.00208 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47326 * 91.51419 * 4 2 1 6 6 C 1.36737 * 127.13501 * 92.08338 * 5 4 2 7 7 C 1.50700 * 126.35062 * 359.97438 * 6 5 4 8 8 C 1.53000 * 109.47195 * 262.43610 * 7 6 5 9 9 H 1.08998 * 109.47274 * 53.92158 * 8 7 6 10 10 O 1.42899 * 109.47070 * 293.91671 * 8 7 6 11 11 C 1.50707 * 109.47123 * 173.92143 * 8 7 6 12 12 H 1.08004 * 119.99707 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00020 * 179.97438 * 11 8 7 14 14 N 1.31517 * 120.00096 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99945 * 180.02562 * 13 11 8 16 16 H 1.48496 * 109.47062 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47254 * 120.00027 * 15 13 11 18 18 H 1.48504 * 109.46830 * 239.99874 * 15 13 11 19 19 N 1.30297 * 107.30537 * 180.02562 * 6 5 4 20 20 N 1.28529 * 110.05378 * 0.02562 * 19 6 5 21 21 C 1.31219 * 109.86003 * 359.97438 * 20 19 6 22 22 N 1.38583 * 126.47508 * 179.74231 * 21 20 19 23 23 C 1.48561 * 110.99466 * 349.66098 * 22 21 20 24 24 C 1.54382 * 104.59053 * 159.04267 * 23 22 21 25 25 H 1.09001 * 117.60645 * 115.27918 * 24 23 22 26 26 C 1.54268 * 105.05927 * 336.14683 * 24 23 22 27 27 H 1.09002 * 121.77943 * 137.87304 * 26 24 23 28 28 C 1.48551 * 111.00186 * 105.08230 * 22 21 20 29 29 C 1.52994 * 59.72812 * 245.90465 * 26 24 23 30 30 C 1.52996 * 117.44785 * 252.35469 * 29 26 24 31 31 C 1.53003 * 117.44358 * 107.64452 * 29 26 24 32 32 H 1.08000 * 120.00120 * 0.02562 * 1 2 3 33 33 H 1.07997 * 119.99689 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47542 * 174.73138 * 3 2 1 35 35 H 1.09000 * 109.46898 * 294.73074 * 3 2 1 36 36 H 1.08998 * 109.47120 * 54.72888 * 3 2 1 37 37 H 1.09002 * 109.47161 * 331.51277 * 4 2 1 38 38 H 1.09003 * 109.47191 * 211.51398 * 4 2 1 39 39 H 1.08997 * 109.46851 * 22.43289 * 7 6 5 40 40 H 1.08995 * 109.47275 * 142.43046 * 7 6 5 41 41 H 0.96699 * 114.00302 * 300.00470 * 10 8 7 42 42 H 0.97001 * 120.00024 * 180.02562 * 14 13 11 43 43 H 1.08997 * 110.41441 * 277.81945 * 23 22 21 44 44 H 1.09000 * 110.41304 * 40.26815 * 23 22 21 45 45 H 1.08997 * 110.41344 * 319.74073 * 28 22 21 46 46 H 1.09010 * 110.41364 * 82.18163 * 28 22 21 47 47 H 1.09007 * 109.47497 * 129.22829 * 30 29 26 48 48 H 1.08997 * 109.47316 * 249.22924 * 30 29 26 49 49 H 1.08997 * 109.47301 * 9.22935 * 30 29 26 50 50 H 1.08996 * 109.46909 * 354.31774 * 31 29 26 51 51 H 1.09004 * 109.47018 * 114.31804 * 31 29 26 52 52 H 1.09001 * 109.47201 * 234.31705 * 31 29 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 -0.0006 5 7 2.3393 -1.7091 -1.3814 6 6 3.4562 -1.4248 -2.1173 7 6 4.6496 -0.6276 -1.6578 8 6 4.5174 0.8162 -2.1465 9 1 3.5568 1.2211 -1.8281 10 8 4.5975 0.8454 -3.5730 11 6 5.6311 1.6478 -1.5638 12 1 6.3605 1.1919 -0.9106 13 6 5.7194 2.9902 -1.8655 14 7 4.8321 3.5449 -2.6621 15 14 7.1003 4.0207 -1.1439 16 1 7.9597 3.1658 -0.2862 17 1 7.9149 4.5968 -2.2438 18 1 6.5235 5.1190 -0.3275 19 7 3.2969 -1.9700 -3.2900 20 7 2.1638 -2.5743 -3.3448 21 6 1.5346 -2.4464 -2.2004 22 7 0.2859 -2.9582 -1.8852 23 6 -0.3955 -3.4832 -3.0964 24 6 -1.4564 -4.4635 -2.5517 25 1 -2.5050 -4.2150 -2.7153 26 6 -0.9300 -4.8953 -1.1674 27 1 -1.5895 -4.9817 -0.3039 28 6 0.4046 -4.1395 -0.9923 29 6 -1.0382 -5.9142 -2.3036 30 6 -2.1491 -6.9618 -2.2079 31 6 0.2643 -6.3926 -2.9481 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5399 -0.9353 0.0004 34 1 3.1313 1.1082 0.0944 35 1 1.8728 1.8347 -0.9334 36 1 1.7313 1.9165 0.8390 37 1 1.4630 -2.0716 0.4892 38 1 3.0039 -1.1819 0.5366 39 1 4.6971 -0.6396 -0.5689 40 1 5.5595 -1.0675 -2.0659 41 1 5.4277 0.4990 -3.9275 42 1 4.8945 4.4893 -2.8747 43 1 -0.8737 -2.6720 -3.6453 44 1 0.3151 -4.0083 -3.7348 45 1 1.2404 -4.7672 -1.3013 46 1 0.5288 -3.8224 0.0433 47 1 -2.7132 -6.9796 -3.1405 48 1 -1.7090 -7.9431 -2.0308 49 1 -2.8169 -6.7092 -1.3843 50 1 1.1017 -5.8290 -2.5368 51 1 0.4039 -7.4537 -2.7411 52 1 0.2154 -6.2361 -4.0257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342111053.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:08 Heat of formation + Delta-G solvation = 72.379030 kcal Electronic energy + Delta-G solvation = -32148.509905 eV Core-core repulsion = 28150.520377 eV Total energy + Delta-G solvation = -3997.989528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -44.01663 -41.47433 -38.14929 -37.69134 -36.52265 -34.45643 -34.19874 -32.87505 -30.85708 -29.76818 -29.20499 -28.57399 -28.38774 -27.83360 -27.08471 -24.71582 -23.56600 -21.90445 -21.87599 -20.97932 -19.84061 -19.40957 -19.03933 -18.14363 -17.46111 -17.26653 -16.72435 -16.62047 -16.20991 -15.87424 -15.54164 -15.45485 -15.31380 -14.95761 -14.94309 -14.52610 -14.37298 -14.16453 -13.96307 -13.38924 -13.23741 -13.18787 -13.08525 -12.95502 -12.91198 -12.81615 -12.77434 -12.67895 -12.65891 -12.47900 -12.33401 -12.25926 -12.03084 -11.94280 -11.57671 -11.14922 -11.04295 -10.92363 -10.66367 -10.59278 -10.50158 -10.16407 -10.10611 -9.32302 -8.08990 -6.34499 0.66432 0.95963 1.41523 1.44489 1.54915 1.59807 1.85247 2.41854 2.50246 2.72827 3.18024 3.31033 3.47230 3.53931 3.60094 3.70428 3.76052 3.94989 3.97802 4.09487 4.11853 4.13650 4.23700 4.30889 4.34567 4.44496 4.57684 4.60097 4.61821 4.68686 4.72679 4.75889 4.76637 4.87143 4.91934 4.94602 4.98863 5.02039 5.07352 5.08707 5.12278 5.17380 5.20149 5.28080 5.37435 5.46516 5.53487 5.58692 5.65413 5.80222 5.80933 6.08738 6.19476 6.76584 7.38468 7.59954 7.79826 8.95233 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002837 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.975955 B = 9868.074369 C =10505.079519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.165 4.165 3 C -0.112 4.112 4 C 0.145 3.855 5 N -0.465 5.465 6 C 0.204 3.796 7 C -0.050 4.050 8 C 0.231 3.769 9 H 0.046 0.954 10 O -0.580 6.580 11 C -0.574 4.574 12 H 0.067 0.933 13 C 0.030 3.970 14 N -0.898 5.898 15 Si 0.954 3.046 16 H -0.259 1.259 17 H -0.287 1.287 18 H -0.281 1.281 19 N -0.320 5.320 20 N -0.357 5.357 21 C 0.340 3.660 22 N -0.422 5.422 23 C 0.072 3.928 24 C -0.156 4.156 25 H 0.138 0.862 26 C -0.146 4.146 27 H 0.147 0.853 28 C 0.056 3.944 29 C -0.085 4.085 30 C -0.109 4.109 31 C -0.129 4.129 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.080 0.920 37 H 0.124 0.876 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.353 0.647 42 H 0.258 0.742 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.049 0.951 46 H 0.106 0.894 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.071 0.929 50 H 0.041 0.959 51 H 0.076 0.924 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 -19.187 9.977 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.166 4.166 3 C -0.169 4.169 4 C 0.024 3.976 5 N -0.159 5.159 6 C -0.065 4.065 7 C -0.090 4.090 8 C 0.173 3.827 9 H 0.064 0.936 10 O -0.383 6.383 11 C -0.612 4.612 12 H 0.085 0.915 13 C -0.173 4.173 14 N -0.535 5.535 15 Si 0.780 3.220 16 H -0.182 1.182 17 H -0.213 1.213 18 H -0.207 1.207 19 N -0.158 5.158 20 N -0.201 5.201 21 C -0.018 4.018 22 N -0.147 5.147 23 C -0.055 4.055 24 C -0.175 4.175 25 H 0.156 0.844 26 C -0.164 4.164 27 H 0.165 0.835 28 C -0.070 4.070 29 C -0.086 4.086 30 C -0.165 4.165 31 C -0.185 4.185 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.197 0.803 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.124 0.876 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.060 0.940 51 H 0.095 0.905 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.168 -18.752 8.814 25.678 hybrid contribution 1.613 1.031 0.614 2.011 sum -13.554 -17.721 9.428 24.221 Atomic orbital electron populations 1.23976 0.94594 1.03215 0.96180 1.21804 0.96096 0.94692 1.03981 1.20834 1.00461 0.94754 1.00862 1.21157 1.02833 0.95646 0.77979 1.46395 1.14954 1.40098 1.14416 1.25145 0.91686 1.00906 0.88726 1.20950 0.90618 0.95708 1.01773 1.19480 0.97002 0.87662 0.78555 0.93632 1.86571 1.40934 1.87086 1.23748 1.21975 1.13491 0.94656 1.31111 0.91465 1.25823 0.97751 0.99239 0.94466 1.70251 1.36216 1.11916 1.35151 0.85590 0.79475 0.78773 0.78206 1.18228 1.21281 1.20677 1.73897 1.11560 1.13097 1.17244 1.74390 1.02802 1.22714 1.20215 1.22883 0.91945 0.98424 0.88503 1.62577 1.07989 1.29316 1.14833 1.22522 0.95340 0.97422 0.90199 1.23544 0.99348 0.94713 0.99873 0.84395 1.23671 0.96863 1.02257 0.93650 0.83521 1.22898 0.97701 0.88554 0.97805 1.21786 0.97855 0.90052 0.98885 1.21326 0.95742 0.96637 1.02836 1.21500 0.95020 1.01751 1.00276 0.87703 0.86232 0.91984 0.94842 0.90093 0.85803 0.87121 0.88448 0.89198 0.80254 0.93285 0.90250 0.92329 0.93253 0.87595 0.91363 0.91051 0.90957 0.94036 0.90470 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.40 13.93 67.78 0.94 -2.46 16 2 C -0.16 -4.59 5.64 -16.49 -0.09 -4.69 16 3 C -0.11 -3.79 8.72 71.24 0.62 -3.16 16 4 C 0.14 3.68 6.13 85.63 0.52 4.21 16 5 N -0.47 -15.68 2.79 -518.91 -1.45 -17.13 16 6 C 0.20 8.31 7.11 137.64 0.98 9.29 16 7 C -0.05 -2.02 5.25 29.85 0.16 -1.87 16 8 C 0.23 11.52 2.33 29.85 0.07 11.59 16 9 H 0.05 2.48 5.03 -2.39 -0.01 2.47 16 10 O -0.58 -31.96 12.51 -148.98 -1.86 -33.83 16 11 C -0.57 -29.79 8.76 25.60 0.22 -29.56 16 12 H 0.07 3.29 7.74 -2.91 -0.02 3.26 16 13 C 0.03 1.61 5.40 84.65 0.46 2.07 16 14 N -0.90 -53.14 12.84 21.45 0.28 -52.87 16 15 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 N -0.32 -14.61 12.18 -49.54 -0.60 -15.22 16 20 N -0.36 -15.00 10.93 -58.00 -0.63 -15.63 16 21 C 0.34 11.67 6.91 260.11 1.80 13.46 16 22 N -0.42 -10.90 5.42 -692.07 -3.75 -14.65 16 23 C 0.07 1.78 5.73 86.45 0.50 2.28 16 24 C -0.16 -2.57 6.81 -9.89 -0.07 -2.64 16 25 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 26 C -0.15 -2.06 6.71 -9.90 -0.07 -2.13 16 27 H 0.15 1.41 8.13 -2.39 -0.02 1.39 16 28 C 0.06 1.08 5.73 86.45 0.50 1.58 16 29 C -0.09 -1.19 2.67 -52.18 -0.14 -1.33 16 30 C -0.11 -0.98 9.84 71.98 0.71 -0.27 16 31 C -0.13 -2.22 8.47 71.98 0.61 -1.61 16 32 H 0.10 2.42 8.05 -2.91 -0.02 2.39 16 33 H 0.12 2.48 8.02 -2.91 -0.02 2.45 16 34 H 0.06 2.27 6.76 -2.39 -0.02 2.25 16 35 H 0.03 1.38 7.43 -2.39 -0.02 1.36 16 36 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.12 2.32 6.52 -2.39 -0.02 2.31 16 38 H 0.11 2.57 6.97 -2.39 -0.02 2.55 16 39 H 0.10 3.38 7.04 -2.39 -0.02 3.36 16 40 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 41 H 0.35 17.67 9.04 -74.06 -0.67 17.00 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.70 5.98 -2.39 -0.01 1.68 16 45 H 0.05 1.12 5.63 -2.39 -0.01 1.10 16 46 H 0.11 1.63 6.85 -2.38 -0.02 1.62 16 47 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.07 0.56 7.89 -2.39 -0.02 0.54 16 49 H 0.07 0.49 7.96 -2.39 -0.02 0.47 16 50 H 0.04 0.90 5.26 -2.39 -0.01 0.88 16 51 H 0.08 1.07 7.88 -2.38 -0.02 1.05 16 52 H 0.06 1.07 7.95 -2.39 -0.02 1.05 16 Total: -1.00 -72.65 408.79 1.99 -70.67 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: 0.27 Total: 39.67 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 7.72 Total: -5.26 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -6.16 Total: -115.49 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.86 Total: -33.83 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -72.65 1.99 -70.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342111053.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.045 kcal (2) G-P(sol) polarization free energy of solvation -72.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds