Wall clock time and date at job start Wed Apr 1 2020 05:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00034 * 2 1 4 4 C 1.50702 * 120.00024 * 179.97438 * 2 1 3 5 5 N 1.46493 * 109.46923 * 97.16999 * 4 2 1 6 6 C 1.36737 * 127.13661 * 81.80905 * 5 4 2 7 7 C 1.50707 * 126.34870 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47023 * 89.99802 * 7 6 5 9 9 H 1.08995 * 109.46803 * 55.00120 * 8 7 6 10 10 O 1.42898 * 109.47314 * 295.00208 * 8 7 6 11 11 C 1.50699 * 109.46540 * 175.00337 * 8 7 6 12 12 H 1.08001 * 120.00637 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99455 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00188 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99739 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47195 * 89.99636 * 15 13 11 17 17 H 1.48498 * 109.47059 * 209.99646 * 15 13 11 18 18 H 1.48499 * 109.47023 * 329.99441 * 15 13 11 19 19 N 1.30296 * 107.30666 * 180.27702 * 6 5 4 20 20 N 1.28528 * 110.05266 * 359.56562 * 19 6 5 21 21 C 1.31214 * 109.85847 * 0.44207 * 20 19 6 22 22 N 1.38580 * 126.47361 * 179.69442 * 21 20 19 23 23 C 1.48531 * 110.99665 * 36.12504 * 22 21 20 24 24 C 1.54322 * 104.67258 * 200.80339 * 23 22 21 25 25 H 1.08997 * 111.82850 * 261.51417 * 24 23 22 26 26 C 1.54168 * 108.86307 * 137.48771 * 24 23 22 27 27 C 1.54842 * 104.32634 * 223.67886 * 26 24 23 28 28 C 1.54841 * 102.73533 * 38.18318 * 27 26 24 29 29 C 1.54160 * 104.32526 * 321.81972 * 28 27 26 30 30 H 1.09002 * 111.79302 * 261.29005 * 29 28 27 31 31 C 1.48534 * 111.00284 * 280.72275 * 22 21 20 32 32 H 1.07998 * 120.00128 * 7.05009 * 1 2 3 33 33 H 1.08003 * 119.99595 * 187.05001 * 1 2 3 34 34 H 1.09004 * 109.47205 * 269.99608 * 3 2 1 35 35 H 1.08998 * 109.47360 * 29.99355 * 3 2 1 36 36 H 1.09004 * 109.47367 * 149.99939 * 3 2 1 37 37 H 1.09004 * 109.46678 * 337.17111 * 4 2 1 38 38 H 1.08998 * 109.47104 * 217.17125 * 4 2 1 39 39 H 1.08996 * 109.46728 * 330.00311 * 7 6 5 40 40 H 1.08996 * 109.46763 * 209.99969 * 7 6 5 41 41 H 0.96703 * 113.99784 * 300.00094 * 10 8 7 42 42 H 0.97003 * 120.00262 * 179.97438 * 14 13 11 43 43 H 1.08993 * 110.39997 * 319.60259 * 23 22 21 44 44 H 1.09005 * 110.39687 * 81.89384 * 23 22 21 45 45 H 1.08993 * 110.46279 * 342.39477 * 26 24 23 46 46 H 1.09001 * 110.45909 * 104.83897 * 26 24 23 47 47 H 1.08998 * 110.75640 * 156.49641 * 27 26 24 48 48 H 1.09005 * 110.75873 * 279.68896 * 27 26 24 49 49 H 1.09005 * 110.46096 * 80.52450 * 28 27 26 50 50 H 1.08998 * 110.46864 * 203.10285 * 28 27 26 51 51 H 1.09008 * 110.39100 * 277.98565 * 31 22 21 52 52 H 1.08993 * 110.39654 * 40.38746 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4570 -1.6424 -1.3696 6 6 3.5382 -1.1671 -2.0588 7 6 4.5626 -0.1870 -1.5478 8 6 5.7074 -0.9490 -0.8771 9 1 6.1154 -1.6799 -1.5752 10 8 5.2160 -1.6218 0.2839 11 6 6.7889 0.0207 -0.4756 12 1 6.6717 1.0749 -0.6789 13 6 7.9285 -0.4382 0.1503 14 7 8.0714 -1.7220 0.3974 15 14 9.2688 0.7638 0.6486 16 1 9.0082 1.2525 2.0264 17 1 10.5867 0.0808 0.6067 18 1 9.2770 1.9135 -0.2912 19 7 3.5155 -1.7145 -3.2409 20 7 2.5065 -2.5042 -3.3417 21 6 1.8204 -2.4957 -2.2232 22 7 0.6667 -3.2165 -1.9590 23 6 0.7145 -4.5531 -2.6050 24 6 -0.7606 -4.9981 -2.6920 25 1 -1.0284 -5.6746 -1.8804 26 6 -1.0082 -5.6355 -4.0738 27 6 -2.3637 -5.0432 -4.5316 28 6 -2.2830 -3.5799 -4.0319 29 6 -1.5769 -3.6819 -2.6653 30 1 -2.2883 -3.6615 -1.8397 31 6 -0.5208 -2.5611 -2.5645 32 1 -0.5400 0.9282 -0.1148 33 1 -0.5400 -0.9283 0.1148 34 1 2.2453 1.6197 -1.0277 35 1 1.4744 2.0647 0.5137 36 1 3.0160 1.1747 0.5139 37 1 1.4249 -2.0931 0.3997 38 1 2.9544 -1.2100 0.6214 39 1 4.0968 0.4807 -0.8230 40 1 4.9538 0.3970 -2.3809 41 1 4.8373 -1.0316 0.9497 42 1 8.8733 -2.0449 0.8375 43 1 1.1480 -4.4778 -3.6022 44 1 1.2879 -5.2501 -1.9939 45 1 -0.2164 -5.3572 -4.7692 46 1 -1.0739 -6.7201 -3.9868 47 1 -2.4527 -5.0764 -5.6174 48 1 -3.1941 -5.5699 -4.0611 49 1 -1.6942 -2.9740 -4.7207 50 1 -3.2826 -3.1617 -3.9141 51 1 -0.8801 -1.7574 -1.9217 52 1 -0.2787 -2.1770 -3.5553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342111889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:56 Heat of formation + Delta-G solvation = 47.210700 kcal Electronic energy + Delta-G solvation = -32096.137283 eV Core-core repulsion = 28097.056375 eV Total energy + Delta-G solvation = -3999.080908 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.57674 -40.09037 -36.93375 -36.15680 -35.58177 -33.14073 -32.20155 -31.53488 -30.79291 -29.56139 -27.52104 -27.44450 -26.68722 -25.87385 -25.21104 -22.91652 -21.78901 -21.21498 -20.38724 -20.02811 -19.37821 -18.59482 -17.30244 -16.83594 -16.71185 -15.97195 -15.73374 -14.90143 -14.80783 -14.68430 -14.59877 -14.36782 -14.09991 -14.02761 -13.72654 -13.25748 -13.18065 -12.92216 -12.64297 -12.56004 -12.25107 -12.08094 -11.90735 -11.59498 -11.39392 -11.37425 -11.30659 -11.14976 -11.02242 -11.01355 -10.93158 -10.90259 -10.80646 -10.75536 -10.71652 -10.13711 -10.12285 -9.73875 -9.31929 -9.28527 -8.93601 -8.64953 -8.51839 -8.01624 -6.06360 -4.26186 1.79391 2.17023 2.81407 3.24417 3.30098 3.32691 3.35562 3.90778 4.17577 4.25082 4.34043 4.45654 4.63407 4.71577 4.94078 4.96697 5.02377 5.09254 5.12958 5.16587 5.21061 5.23027 5.26892 5.42549 5.42810 5.46453 5.52233 5.57086 5.60977 5.64565 5.68973 5.69844 5.75104 5.78409 5.81972 5.93366 5.94482 6.02241 6.10535 6.13986 6.16956 6.26024 6.35246 6.35755 6.42562 6.51166 6.64592 6.74265 6.96759 7.52968 7.64386 7.76878 8.06243 8.75430 9.21114 9.23237 9.49847 10.97696 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.002858 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.113041 B = 9795.384195 C =10635.533210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.142 4.142 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.450 5.450 6 C 0.225 3.775 7 C -0.072 4.072 8 C 0.238 3.762 9 H 0.063 0.937 10 O -0.561 6.561 11 C -0.573 4.573 12 H 0.059 0.941 13 C 0.081 3.919 14 N -0.856 5.856 15 Si 0.891 3.109 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.272 1.272 19 N -0.302 5.302 20 N -0.318 5.318 21 C 0.317 3.683 22 N -0.437 5.437 23 C 0.050 3.950 24 C -0.091 4.091 25 H 0.089 0.911 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.121 4.121 29 C -0.089 4.089 30 H 0.089 0.911 31 C 0.048 3.952 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.338 0.662 42 H 0.261 0.739 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.081 0.919 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.861 -1.688 -2.385 23.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.143 4.143 3 C -0.181 4.181 4 C 0.022 3.978 5 N -0.141 5.141 6 C -0.042 4.042 7 C -0.112 4.112 8 C 0.179 3.821 9 H 0.081 0.919 10 O -0.364 6.364 11 C -0.611 4.611 12 H 0.077 0.923 13 C -0.126 4.126 14 N -0.491 5.491 15 Si 0.718 3.282 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.197 1.197 19 N -0.141 5.141 20 N -0.162 5.162 21 C -0.039 4.039 22 N -0.161 5.161 23 C -0.077 4.077 24 C -0.110 4.110 25 H 0.107 0.893 26 C -0.159 4.159 27 C -0.160 4.160 28 C -0.158 4.158 29 C -0.108 4.108 30 H 0.107 0.893 31 C -0.079 4.079 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.182 0.818 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.131 -2.750 -3.477 22.570 hybrid contribution 0.390 1.481 1.188 1.938 sum -21.741 -1.269 -2.290 21.898 Atomic orbital electron populations 1.23818 0.95094 1.02226 0.99872 1.21995 0.95670 0.95713 1.00965 1.21016 1.00681 0.93894 1.02553 1.20861 1.01448 0.95056 0.80484 1.46090 1.20645 1.34091 1.13269 1.25286 0.89821 0.99906 0.89198 1.21380 0.93509 0.94716 1.01595 1.19407 0.86912 0.91768 0.83973 0.91890 1.86677 1.81146 1.37827 1.30720 1.21553 1.03432 0.94000 1.42146 0.92251 1.25038 0.97791 0.94937 0.94836 1.70079 1.27024 1.12882 1.39102 0.86641 0.81359 0.81264 0.78936 1.20542 1.21098 1.19707 1.74004 1.14677 1.09211 1.16246 1.74406 1.04601 1.18307 1.18863 1.22372 0.96500 0.97200 0.87874 1.62101 0.98225 1.02440 1.53362 1.23321 0.96696 0.88117 0.99576 1.22525 0.93952 0.96382 0.98172 0.89301 1.22522 0.97716 0.99919 0.95762 1.22485 0.97421 0.95554 1.00571 1.22510 1.00380 0.97210 0.95732 1.22487 0.96230 0.93901 0.98213 0.89308 1.23373 0.88879 0.96913 0.98776 0.88085 0.88024 0.91362 0.91554 0.90428 0.87993 0.87294 0.90297 0.88700 0.81787 0.92868 0.90808 0.89926 0.90991 0.91480 0.91561 0.91498 0.91238 0.91573 0.90056 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 13.39 29.01 0.39 -1.34 16 2 C -0.14 -1.69 5.63 -101.07 -0.57 -2.26 16 3 C -0.12 -1.43 8.56 36.00 0.31 -1.12 16 4 C 0.14 2.03 6.01 -5.20 -0.03 1.99 16 5 N -0.45 -7.80 2.79 -115.37 -0.32 -8.12 16 6 C 0.23 4.54 7.09 -154.01 -1.09 3.44 16 7 C -0.07 -1.43 5.20 -27.88 -0.14 -1.58 16 8 C 0.24 5.82 2.81 -27.88 -0.08 5.74 16 9 H 0.06 1.81 8.14 -51.93 -0.42 1.39 16 10 O -0.56 -13.49 11.54 -35.23 -0.41 -13.90 16 11 C -0.57 -14.97 8.76 -34.44 -0.30 -15.28 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 13 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 14 N -0.86 -24.85 12.84 55.43 0.71 -24.14 16 15 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 N -0.30 -6.70 12.18 32.99 0.40 -6.30 16 20 N -0.32 -6.50 11.25 30.31 0.34 -6.16 16 21 C 0.32 5.56 6.68 -318.88 -2.13 3.43 16 22 N -0.44 -6.03 5.34 -170.21 -0.91 -6.94 16 23 C 0.05 0.63 5.92 -2.23 -0.01 0.62 16 24 C -0.09 -0.84 3.93 -88.31 -0.35 -1.19 16 25 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 26 C -0.12 -1.01 6.36 -25.15 -0.16 -1.17 16 27 C -0.12 -0.88 6.90 -24.79 -0.17 -1.06 16 28 C -0.12 -0.94 6.36 -25.15 -0.16 -1.10 16 29 C -0.09 -0.78 3.93 -88.32 -0.35 -1.13 16 30 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 31 C 0.05 0.55 5.96 -2.23 -0.01 0.53 16 32 H 0.10 0.88 8.05 -52.49 -0.42 0.46 16 33 H 0.10 0.96 7.42 -52.48 -0.39 0.57 16 34 H 0.07 0.84 7.97 -51.93 -0.41 0.43 16 35 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.08 0.93 6.88 -51.93 -0.36 0.57 16 37 H 0.10 1.33 7.85 -51.93 -0.41 0.93 16 38 H 0.11 1.60 5.65 -51.93 -0.29 1.31 16 39 H 0.08 1.36 4.65 -51.93 -0.24 1.12 16 40 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 41 H 0.34 6.96 7.72 45.56 0.35 7.31 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.07 0.68 7.18 -51.93 -0.37 0.31 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.62 7.18 -51.93 -0.37 0.24 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.08 0.87 7.07 -51.92 -0.37 0.50 16 52 H 0.06 0.76 7.01 -51.93 -0.36 0.39 16 LS Contribution 404.06 15.07 6.09 6.09 Total: -1.00 -32.14 404.06 -11.82 -43.95 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.74 Total: 9.30 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -4.96 Total: -9.35 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.22 Total: -51.66 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.41 Total: -13.90 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.14 -11.82 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342111889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.165 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds