Wall clock time and date at job start Wed Apr 1 2020 05:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00034 * 2 1 4 4 C 1.50702 * 120.00024 * 179.97438 * 2 1 3 5 5 N 1.46493 * 109.46923 * 97.16999 * 4 2 1 6 6 C 1.36737 * 127.13661 * 81.80905 * 5 4 2 7 7 C 1.50707 * 126.34870 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47023 * 89.99802 * 7 6 5 9 9 H 1.08995 * 109.46803 * 55.00120 * 8 7 6 10 10 O 1.42898 * 109.47314 * 295.00208 * 8 7 6 11 11 C 1.50699 * 109.46540 * 175.00337 * 8 7 6 12 12 H 1.08001 * 120.00637 * 359.97438 * 11 8 7 13 13 C 1.37883 * 119.99455 * 180.02562 * 11 8 7 14 14 N 1.31509 * 120.00188 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99739 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47195 * 89.99636 * 15 13 11 17 17 H 1.48498 * 109.47059 * 209.99646 * 15 13 11 18 18 H 1.48499 * 109.47023 * 329.99441 * 15 13 11 19 19 N 1.30296 * 107.30666 * 180.27702 * 6 5 4 20 20 N 1.28528 * 110.05266 * 359.56562 * 19 6 5 21 21 C 1.31214 * 109.85847 * 0.44207 * 20 19 6 22 22 N 1.38580 * 126.47361 * 179.69442 * 21 20 19 23 23 C 1.48531 * 110.99665 * 36.12504 * 22 21 20 24 24 C 1.54322 * 104.67258 * 200.80339 * 23 22 21 25 25 H 1.08997 * 111.82850 * 261.51417 * 24 23 22 26 26 C 1.54168 * 108.86307 * 137.48771 * 24 23 22 27 27 C 1.54842 * 104.32634 * 223.67886 * 26 24 23 28 28 C 1.54841 * 102.73533 * 38.18318 * 27 26 24 29 29 C 1.54160 * 104.32526 * 321.81972 * 28 27 26 30 30 H 1.09002 * 111.79302 * 261.29005 * 29 28 27 31 31 C 1.48534 * 111.00284 * 280.72275 * 22 21 20 32 32 H 1.07998 * 120.00128 * 7.05009 * 1 2 3 33 33 H 1.08003 * 119.99595 * 187.05001 * 1 2 3 34 34 H 1.09004 * 109.47205 * 269.99608 * 3 2 1 35 35 H 1.08998 * 109.47360 * 29.99355 * 3 2 1 36 36 H 1.09004 * 109.47367 * 149.99939 * 3 2 1 37 37 H 1.09004 * 109.46678 * 337.17111 * 4 2 1 38 38 H 1.08998 * 109.47104 * 217.17125 * 4 2 1 39 39 H 1.08996 * 109.46728 * 330.00311 * 7 6 5 40 40 H 1.08996 * 109.46763 * 209.99969 * 7 6 5 41 41 H 0.96703 * 113.99784 * 300.00094 * 10 8 7 42 42 H 0.97003 * 120.00262 * 179.97438 * 14 13 11 43 43 H 1.08993 * 110.39997 * 319.60259 * 23 22 21 44 44 H 1.09005 * 110.39687 * 81.89384 * 23 22 21 45 45 H 1.08993 * 110.46279 * 342.39477 * 26 24 23 46 46 H 1.09001 * 110.45909 * 104.83897 * 26 24 23 47 47 H 1.08998 * 110.75640 * 156.49641 * 27 26 24 48 48 H 1.09005 * 110.75873 * 279.68896 * 27 26 24 49 49 H 1.09005 * 110.46096 * 80.52450 * 28 27 26 50 50 H 1.08998 * 110.46864 * 203.10285 * 28 27 26 51 51 H 1.09008 * 110.39100 * 277.98565 * 31 22 21 52 52 H 1.08993 * 110.39654 * 40.38746 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4570 -1.6424 -1.3696 6 6 3.5382 -1.1671 -2.0588 7 6 4.5626 -0.1870 -1.5478 8 6 5.7074 -0.9490 -0.8771 9 1 6.1154 -1.6799 -1.5752 10 8 5.2160 -1.6218 0.2839 11 6 6.7889 0.0207 -0.4756 12 1 6.6717 1.0749 -0.6789 13 6 7.9285 -0.4382 0.1503 14 7 8.0714 -1.7220 0.3974 15 14 9.2688 0.7638 0.6486 16 1 9.0082 1.2525 2.0264 17 1 10.5867 0.0808 0.6067 18 1 9.2770 1.9135 -0.2912 19 7 3.5155 -1.7145 -3.2409 20 7 2.5065 -2.5042 -3.3417 21 6 1.8204 -2.4957 -2.2232 22 7 0.6667 -3.2165 -1.9590 23 6 0.7145 -4.5531 -2.6050 24 6 -0.7606 -4.9981 -2.6920 25 1 -1.0284 -5.6746 -1.8804 26 6 -1.0082 -5.6355 -4.0738 27 6 -2.3637 -5.0432 -4.5316 28 6 -2.2830 -3.5799 -4.0319 29 6 -1.5769 -3.6819 -2.6653 30 1 -2.2883 -3.6615 -1.8397 31 6 -0.5208 -2.5611 -2.5645 32 1 -0.5400 0.9282 -0.1148 33 1 -0.5400 -0.9283 0.1148 34 1 2.2453 1.6197 -1.0277 35 1 1.4744 2.0647 0.5137 36 1 3.0160 1.1747 0.5139 37 1 1.4249 -2.0931 0.3997 38 1 2.9544 -1.2100 0.6214 39 1 4.0968 0.4807 -0.8230 40 1 4.9538 0.3970 -2.3809 41 1 4.8373 -1.0316 0.9497 42 1 8.8733 -2.0449 0.8375 43 1 1.1480 -4.4778 -3.6022 44 1 1.2879 -5.2501 -1.9939 45 1 -0.2164 -5.3572 -4.7692 46 1 -1.0739 -6.7201 -3.9868 47 1 -2.4527 -5.0764 -5.6174 48 1 -3.1941 -5.5699 -4.0611 49 1 -1.6942 -2.9740 -4.7207 50 1 -3.2826 -3.1617 -3.9141 51 1 -0.8801 -1.7574 -1.9217 52 1 -0.2787 -2.1770 -3.5553 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342111889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:55 Heat of formation + Delta-G solvation = 28.806207 kcal Electronic energy + Delta-G solvation = -32096.935362 eV Core-core repulsion = 28097.056375 eV Total energy + Delta-G solvation = -3999.878987 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.03474 -40.98181 -38.35335 -37.61927 -36.64625 -34.42021 -34.24795 -33.09348 -31.60310 -30.75260 -28.96397 -28.46490 -27.78249 -27.08301 -26.65859 -24.02894 -23.57741 -22.09383 -21.74139 -21.24146 -20.18999 -19.66609 -19.14412 -18.12603 -17.70508 -17.26239 -16.87328 -16.68991 -16.33918 -15.84432 -15.65262 -15.54780 -15.46257 -15.15056 -14.84701 -14.80045 -14.48753 -14.14323 -13.64955 -13.54746 -13.34281 -13.27035 -13.14504 -13.00030 -12.90038 -12.78484 -12.58082 -12.50316 -12.24960 -12.07284 -12.04834 -12.00880 -11.77535 -11.74484 -11.54774 -11.51153 -11.41217 -11.28476 -10.96812 -10.72565 -10.52531 -10.17752 -10.12014 -9.60658 -8.13903 -6.40606 0.69709 0.85231 1.42428 1.44447 1.54701 1.62179 1.75928 2.40004 2.77707 3.12444 3.34936 3.43877 3.47812 3.61778 3.70527 3.74759 3.97736 4.08391 4.10648 4.14076 4.29412 4.35384 4.36783 4.39061 4.46278 4.49611 4.53937 4.56895 4.62251 4.67197 4.74498 4.80401 4.82577 4.87837 4.91403 4.92595 4.93934 4.95338 5.07506 5.13043 5.16290 5.22022 5.23715 5.37369 5.50570 5.52043 5.54140 5.55936 5.60386 5.69009 5.78927 6.01145 6.20691 6.70931 7.30789 7.47986 7.70407 8.90848 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.002858 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.113041 B = 9795.384195 C =10635.533210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 C -0.123 4.123 4 C 0.141 3.859 5 N -0.445 5.445 6 C 0.212 3.788 7 C -0.054 4.054 8 C 0.245 3.755 9 H 0.008 0.992 10 O -0.573 6.573 11 C -0.580 4.580 12 H 0.072 0.928 13 C 0.026 3.974 14 N -0.901 5.901 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.290 1.290 18 H -0.263 1.263 19 N -0.341 5.341 20 N -0.352 5.352 21 C 0.332 3.668 22 N -0.432 5.432 23 C 0.045 3.955 24 C -0.082 4.082 25 H 0.106 0.894 26 C -0.122 4.122 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.080 4.080 30 H 0.113 0.887 31 C 0.048 3.952 32 H 0.122 0.878 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.355 0.645 42 H 0.261 0.739 43 H 0.050 0.950 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.051 0.949 50 H 0.085 0.915 51 H 0.094 0.906 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.986 -0.576 -0.978 26.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C -0.179 4.179 4 C 0.020 3.980 5 N -0.136 5.136 6 C -0.057 4.057 7 C -0.093 4.093 8 C 0.187 3.813 9 H 0.026 0.974 10 O -0.378 6.378 11 C -0.618 4.618 12 H 0.090 0.910 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.216 1.216 18 H -0.187 1.187 19 N -0.181 5.181 20 N -0.196 5.196 21 C -0.026 4.026 22 N -0.158 5.158 23 C -0.082 4.082 24 C -0.101 4.101 25 H 0.125 0.875 26 C -0.160 4.160 27 C -0.155 4.155 28 C -0.157 4.157 29 C -0.099 4.099 30 H 0.131 0.869 31 C -0.078 4.078 32 H 0.140 0.860 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.109 0.891 41 H 0.201 0.799 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.103 0.897 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.113 0.887 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.282 -1.614 -2.061 25.417 hybrid contribution 1.247 1.055 0.755 1.799 sum -24.035 -0.559 -1.307 24.077 Atomic orbital electron populations 1.24079 0.94332 1.03657 0.96263 1.21856 0.96269 0.94530 1.04029 1.20984 1.00672 0.94357 1.01903 1.21070 1.01571 0.96978 0.78424 1.46279 1.19650 1.33442 1.14191 1.25141 0.90828 1.00348 0.89335 1.21074 0.92220 0.94384 1.01666 1.19046 0.88484 0.90315 0.83482 0.97441 1.86601 1.81351 1.38612 1.31215 1.21950 1.03843 0.94734 1.41267 0.91021 1.25929 1.00328 0.96506 0.94908 1.70238 1.27834 1.15113 1.40595 0.85515 0.77807 0.78932 0.79067 1.19337 1.21560 1.18673 1.73891 1.15937 1.10343 1.17903 1.74323 1.05185 1.19283 1.20815 1.22829 0.96750 0.95987 0.87042 1.62357 0.97433 1.02640 1.53336 1.23395 0.99328 0.87535 0.97933 1.22556 0.91136 0.97097 0.99346 0.87541 1.22515 0.97982 1.00751 0.94764 1.22481 0.96994 0.95028 1.00966 1.22500 1.00945 0.97552 0.94677 1.22542 0.95626 0.92000 0.99722 0.86865 1.23476 0.88382 0.98271 0.97698 0.86021 0.87030 0.92647 0.89290 0.91420 0.86900 0.88285 0.87430 0.89068 0.79948 0.93059 0.93168 0.90803 0.93051 0.90221 0.91275 0.89687 0.92972 0.89592 0.88727 0.94509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 13.39 67.78 0.91 -1.52 16 2 C -0.17 -3.60 5.63 -16.49 -0.09 -3.70 16 3 C -0.12 -2.58 8.56 71.23 0.61 -1.97 16 4 C 0.14 3.85 6.01 85.64 0.51 4.36 16 5 N -0.44 -15.65 2.79 -518.91 -1.45 -17.10 16 6 C 0.21 8.88 7.09 137.64 0.98 9.86 16 7 C -0.05 -2.20 5.20 29.85 0.16 -2.04 16 8 C 0.25 12.49 2.81 29.85 0.08 12.58 16 9 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 10 O -0.57 -28.41 11.54 -148.98 -1.72 -30.13 16 11 C -0.58 -30.69 8.76 25.60 0.22 -30.46 16 12 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 13 C 0.03 1.42 5.40 84.66 0.46 1.87 16 14 N -0.90 -53.82 12.84 21.45 0.28 -53.54 16 15 Si 0.96 42.41 29.54 68.60 2.03 44.43 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 N -0.34 -15.99 12.18 -49.53 -0.60 -16.59 16 20 N -0.35 -15.17 11.25 -58.01 -0.65 -15.82 16 21 C 0.33 11.88 6.68 260.11 1.74 13.62 16 22 N -0.43 -11.74 5.34 -692.44 -3.70 -15.44 16 23 C 0.05 1.16 5.92 86.44 0.51 1.67 16 24 C -0.08 -1.38 3.93 -9.30 -0.04 -1.41 16 25 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 26 C -0.12 -1.87 6.36 31.62 0.20 -1.67 16 27 C -0.12 -1.39 6.90 31.85 0.22 -1.17 16 28 C -0.12 -1.56 6.36 31.62 0.20 -1.36 16 29 C -0.08 -1.18 3.93 -9.30 -0.04 -1.22 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 C 0.05 1.03 5.96 86.43 0.52 1.55 16 32 H 0.12 1.59 8.05 -2.91 -0.02 1.56 16 33 H 0.11 1.65 7.42 -2.91 -0.02 1.63 16 34 H 0.05 1.30 7.97 -2.38 -0.02 1.28 16 35 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 36 H 0.07 1.53 6.88 -2.38 -0.02 1.51 16 37 H 0.11 2.79 7.85 -2.38 -0.02 2.77 16 38 H 0.10 2.89 5.65 -2.39 -0.01 2.88 16 39 H 0.11 3.71 4.65 -2.39 -0.01 3.70 16 40 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.35 14.78 7.72 -74.05 -0.57 14.21 16 42 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.05 1.53 6.33 -2.39 -0.02 1.52 16 44 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.05 1.00 7.18 -2.39 -0.02 0.98 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 49 H 0.05 0.88 7.18 -2.38 -0.02 0.86 16 50 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 1.75 7.07 -2.38 -0.02 1.74 16 52 H 0.04 0.96 7.01 -2.39 -0.02 0.94 16 Total: -1.00 -73.30 404.06 1.69 -71.61 By element: Atomic # 1 Polarization: 33.23 SS G_CDS: 0.35 Total: 33.58 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 7.15 Total: -1.01 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -6.13 Total: -118.49 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -1.72 Total: -30.13 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -73.30 1.69 -71.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342111889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.416 kcal (2) G-P(sol) polarization free energy of solvation -73.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds