Wall clock time and date at job start Wed Apr 1 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50702 * 119.99620 * 2 1 4 4 C 1.50695 * 120.00193 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47187 * 92.62515 * 4 2 1 6 6 C 1.36456 * 127.13685 * 278.67757 * 5 4 2 7 7 N 1.38573 * 126.47406 * 0.03150 * 6 5 4 8 8 C 1.46906 * 110.99932 * 98.12433 * 7 6 5 9 9 C 1.50694 * 109.47452 * 204.15147 * 8 7 6 10 10 H 1.08001 * 119.99764 * 5.26832 * 9 8 7 11 11 C 1.37881 * 120.00072 * 185.27218 * 9 8 7 12 12 N 1.31515 * 119.99804 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99866 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47024 * 90.00033 * 13 11 9 15 15 H 1.48498 * 109.46770 * 209.99506 * 13 11 9 16 16 H 1.48494 * 109.46970 * 329.99768 * 13 11 9 17 17 C 1.46903 * 111.00451 * 222.07666 * 7 6 5 18 18 C 1.52994 * 109.47059 * 161.23917 * 17 7 6 19 19 C 1.52999 * 117.51899 * 113.53398 * 18 17 7 20 20 C 1.52998 * 60.00204 * 107.48267 * 19 18 17 21 21 N 1.31222 * 107.05402 * 179.77403 * 6 5 4 22 22 N 1.28532 * 109.85720 * 0.22871 * 21 6 5 23 23 C 1.30296 * 110.05486 * 359.97438 * 22 21 6 24 24 C 1.50697 * 126.34487 * 180.02562 * 23 22 21 25 25 O 1.42898 * 112.84904 * 234.09578 * 24 23 22 26 26 C 1.53787 * 113.61433 * 102.90102 * 24 23 22 27 27 C 1.53953 * 87.01962 * 220.04405 * 26 24 23 28 28 C 1.53782 * 87.11216 * 25.36418 * 27 26 24 29 29 H 1.07991 * 119.99686 * 4.93998 * 1 2 3 30 30 H 1.08000 * 119.99689 * 184.94543 * 1 2 3 31 31 H 1.09003 * 109.46879 * 246.39855 * 3 2 1 32 32 H 1.08999 * 109.47502 * 6.40214 * 3 2 1 33 33 H 1.09002 * 109.46704 * 126.40397 * 3 2 1 34 34 H 1.09007 * 109.47120 * 332.63024 * 4 2 1 35 35 H 1.08994 * 109.47414 * 212.62880 * 4 2 1 36 36 H 1.09002 * 109.47098 * 324.15100 * 8 7 6 37 37 H 1.09004 * 109.47145 * 84.14715 * 8 7 6 38 38 H 0.97000 * 119.99813 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.46523 * 41.23914 * 17 7 6 40 40 H 1.08997 * 109.46997 * 281.24208 * 17 7 6 41 41 H 1.09003 * 115.55560 * 327.82888 * 18 17 7 42 42 H 1.09003 * 117.49960 * 214.96669 * 19 18 17 43 43 H 1.09000 * 117.49980 * 359.97438 * 19 18 17 44 44 H 1.09009 * 117.49604 * 252.51676 * 20 19 18 45 45 H 1.08995 * 117.50489 * 107.49264 * 20 19 18 46 46 H 0.96695 * 114.00206 * 305.27309 * 25 24 23 47 47 H 1.08996 * 113.61439 * 334.56969 * 26 24 23 48 48 H 1.09000 * 113.61329 * 105.46793 * 26 24 23 49 49 H 1.08993 * 113.54202 * 270.81132 * 27 26 24 50 50 H 1.08999 * 113.66208 * 139.93100 * 27 26 24 51 51 H 1.08994 * 113.61426 * 220.08795 * 28 27 26 52 52 H 1.09001 * 113.61357 * 89.18299 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.3626 -1.6957 -1.3805 6 6 1.5252 -2.3172 -2.2606 7 7 0.2164 -2.7035 -2.0197 8 6 -0.7307 -1.7115 -2.5460 9 6 -2.0344 -1.8148 -1.7973 10 1 -2.1213 -2.4842 -0.9542 11 6 -3.1163 -1.0550 -2.1887 12 7 -3.0103 -0.2396 -3.2152 13 14 -4.7326 -1.1837 -1.2610 14 1 -4.7500 -0.1907 -0.1570 15 1 -5.8591 -0.9114 -2.1894 16 1 -4.8734 -2.5511 -0.6994 17 6 -0.0511 -4.0352 -2.5792 18 6 -1.2992 -4.6245 -1.9191 19 6 -2.5339 -4.8302 -2.7989 20 6 -1.7171 -6.0370 -2.3327 21 7 2.1916 -2.4750 -3.3799 22 7 3.3792 -2.0004 -3.2516 23 6 3.5394 -1.5153 -2.0530 24 6 4.7885 -0.8702 -1.5102 25 8 5.2392 -1.4700 -0.2940 26 6 4.7124 0.6646 -1.4489 27 6 6.1761 0.6760 -1.9258 28 6 5.8987 -0.6971 -2.5602 29 1 -0.5399 0.9318 -0.0805 30 1 -0.5400 -0.9319 0.0806 31 1 2.6015 1.4141 -0.9417 32 1 1.3608 2.1304 0.1146 33 1 2.7734 1.3149 0.8272 34 1 1.4549 -2.0763 0.4716 35 1 2.9948 -1.1872 0.5535 36 1 -0.3170 -0.7110 -2.4189 37 1 -0.9040 -1.9010 -3.6054 38 1 -3.7715 0.2947 -3.4908 39 1 0.8020 -4.6867 -2.3900 40 1 -0.2133 -3.9519 -3.6538 41 1 -1.4634 -4.3347 -0.8812 42 1 -3.5104 -4.6759 -2.3399 43 1 -2.4573 -4.5454 -3.8483 44 1 -1.1029 -6.5463 -3.0754 45 1 -2.1561 -6.6765 -1.5670 46 1 4.5689 -1.4991 0.4022 47 1 4.0156 1.0962 -2.1674 48 1 4.5778 1.0551 -0.4402 49 1 6.8996 0.6425 -1.1113 50 1 6.3929 1.4575 -2.6540 51 1 6.7204 -1.4043 -2.4474 52 1 5.5268 -0.6384 -3.5831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342390567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:24 Heat of formation + Delta-G solvation = 116.393308 kcal Electronic energy + Delta-G solvation = -32973.611034 eV Core-core repulsion = 28977.530109 eV Total energy + Delta-G solvation = -3996.080925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.64889 -39.49240 -37.78194 -36.58784 -35.26501 -34.93727 -33.05754 -32.64241 -29.71184 -27.82607 -27.42509 -26.83589 -25.72385 -25.56396 -24.86797 -22.46803 -21.73065 -21.45914 -20.47967 -19.91506 -19.54821 -18.59292 -17.38421 -16.70316 -16.30685 -15.86090 -15.71513 -15.54403 -15.04026 -14.94345 -14.51954 -14.33372 -13.87484 -13.82933 -13.65396 -13.24824 -13.12983 -12.77020 -12.60264 -12.31684 -12.15487 -11.88268 -11.80420 -11.42318 -11.35740 -11.32560 -11.09478 -11.01957 -11.00681 -10.96398 -10.80895 -10.61012 -10.48030 -10.37704 -10.13716 -10.03643 -9.79855 -9.66647 -9.37085 -9.19969 -8.82287 -8.63094 -8.49073 -7.81775 -6.12511 -4.13397 2.02299 2.26584 2.96262 3.21137 3.21509 3.30719 3.31781 3.81636 4.12910 4.24785 4.39539 4.42242 4.47258 4.64564 4.65059 4.71139 4.90470 5.13684 5.22522 5.30422 5.39887 5.50799 5.53205 5.53563 5.62448 5.63850 5.65052 5.73636 5.73813 5.78309 5.83148 5.95333 6.01904 6.07260 6.10899 6.13070 6.20134 6.26875 6.33283 6.43306 6.45201 6.59710 6.71532 6.84881 6.94353 7.00458 7.08028 7.14369 7.22680 7.28185 7.65306 7.82023 7.97996 8.33082 8.90460 9.17510 9.48953 10.97853 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004066 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.010017 B = 6884.045894 C = 8065.827827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.207 4.207 3 C -0.116 4.116 4 C 0.160 3.840 5 N -0.459 5.459 6 C 0.385 3.615 7 N -0.464 5.464 8 C 0.209 3.791 9 C -0.493 4.493 10 H 0.068 0.932 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.889 3.111 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.116 3.884 18 C -0.113 4.113 19 C -0.151 4.151 20 C -0.202 4.202 21 N -0.329 5.329 22 N -0.275 5.275 23 C 0.138 3.862 24 C 0.196 3.804 25 O -0.531 6.531 26 C -0.158 4.158 27 C -0.136 4.136 28 C -0.104 4.104 29 H 0.099 0.901 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.026 0.974 37 H 0.012 0.988 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.085 0.915 46 H 0.373 0.627 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.805 0.034 7.881 14.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.208 4.208 3 C -0.172 4.172 4 C 0.038 3.962 5 N -0.152 5.152 6 C 0.029 3.971 7 N -0.190 5.190 8 C 0.086 3.914 9 C -0.532 4.532 10 H 0.087 0.913 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.717 3.283 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.197 1.197 17 C -0.012 4.012 18 C -0.132 4.132 19 C -0.188 4.188 20 C -0.239 4.239 21 N -0.173 5.173 22 N -0.116 5.116 23 C -0.130 4.130 24 C 0.152 3.848 25 O -0.337 6.337 26 C -0.196 4.196 27 C -0.173 4.173 28 C -0.142 4.142 29 H 0.117 0.883 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.123 0.877 35 H 0.097 0.903 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.223 0.777 47 H 0.112 0.888 48 H 0.099 0.901 49 H 0.104 0.896 50 H 0.093 0.907 51 H 0.099 0.901 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.482 -0.324 6.548 14.099 hybrid contribution -2.018 0.531 1.248 2.432 sum 10.464 0.207 7.796 13.050 Atomic orbital electron populations 1.24324 0.94562 1.04098 0.90303 1.21491 0.95788 0.94038 1.09513 1.20988 1.00081 0.94707 1.01451 1.20639 1.00088 0.96398 0.79072 1.46435 1.10573 1.45150 1.13084 1.22888 0.92938 0.95971 0.85303 1.59063 0.95457 1.05226 1.59298 1.19923 0.88786 0.88087 0.94615 1.20969 0.94141 1.23664 1.14400 0.91349 1.24885 0.98507 0.95476 0.95058 1.69961 1.31205 1.26046 1.26032 0.86639 0.83584 0.78488 0.79573 1.20807 1.21407 1.19713 1.21432 0.95832 0.87113 0.96804 1.21982 0.95262 0.95572 1.00347 1.22766 0.96087 0.99834 1.00130 1.23050 1.05411 0.91582 1.03892 1.74717 1.00626 1.22878 1.19088 1.73829 1.11428 1.12072 1.14313 1.24976 0.89396 1.06523 0.92126 1.20379 0.87855 0.90318 0.86216 1.86598 1.41690 1.82762 1.22668 1.23857 0.98201 0.94648 1.02908 1.22838 0.96201 0.97528 1.00740 1.22927 0.96397 0.97020 0.97888 0.88316 0.85614 0.91813 0.91984 0.92377 0.87731 0.90311 0.95644 0.97052 0.92872 0.92282 0.93406 0.87237 0.89394 0.89301 0.89749 0.89636 0.77664 0.88778 0.90086 0.89594 0.90728 0.90091 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 11.74 29.01 0.34 -1.21 16 2 C -0.21 -2.92 5.63 -101.07 -0.57 -3.49 16 3 C -0.12 -1.37 9.07 36.01 0.33 -1.04 16 4 C 0.16 2.14 6.21 -5.20 -0.03 2.10 16 5 N -0.46 -7.71 2.79 -115.37 -0.32 -8.03 16 6 C 0.38 7.75 6.37 -318.87 -2.03 5.72 16 7 N -0.46 -9.38 4.44 -175.88 -0.78 -10.16 16 8 C 0.21 4.95 3.89 -4.98 -0.02 4.93 16 9 C -0.49 -11.69 5.98 -34.44 -0.21 -11.90 16 10 H 0.07 1.59 6.11 -52.49 -0.32 1.27 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 12 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 13 Si 0.89 19.77 29.54 -169.99 -5.02 14.75 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 C 0.12 2.22 4.95 -3.83 -0.02 2.20 16 18 C -0.11 -2.00 4.07 -90.62 -0.37 -2.37 16 19 C -0.15 -2.67 9.63 -26.73 -0.26 -2.93 16 20 C -0.20 -3.04 10.25 -26.73 -0.27 -3.31 16 21 N -0.33 -7.18 11.87 30.31 0.36 -6.82 16 22 N -0.27 -5.49 11.46 32.99 0.38 -5.11 16 23 C 0.14 2.31 7.06 -154.02 -1.09 1.22 16 24 C 0.20 2.54 1.46 -90.96 -0.13 2.40 16 25 O -0.53 -6.37 13.38 -35.23 -0.47 -6.84 16 26 C -0.16 -1.71 5.69 -25.83 -0.15 -1.86 16 27 C -0.14 -1.30 8.02 -25.83 -0.21 -1.51 16 28 C -0.10 -1.24 7.31 -25.92 -0.19 -1.43 16 29 H 0.10 1.65 7.86 -52.49 -0.41 1.23 16 30 H 0.13 2.28 6.40 -52.49 -0.34 1.95 16 31 H 0.06 0.80 5.11 -51.93 -0.27 0.53 16 32 H 0.06 0.73 7.81 -51.93 -0.41 0.33 16 33 H 0.06 0.55 7.81 -51.93 -0.41 0.14 16 34 H 0.10 1.40 8.00 -51.92 -0.42 0.98 16 35 H 0.08 0.78 5.10 -51.93 -0.26 0.51 16 36 H 0.03 0.66 6.53 -51.93 -0.34 0.32 16 37 H 0.01 0.32 7.65 -51.93 -0.40 -0.08 16 38 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.05 1.00 7.45 -51.93 -0.39 0.61 16 41 H 0.11 2.00 7.06 -51.93 -0.37 1.64 16 42 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.09 1.66 8.04 -51.93 -0.42 1.24 16 44 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.37 3.48 6.19 45.56 0.28 3.77 16 47 H 0.09 1.15 7.13 -51.93 -0.37 0.78 16 48 H 0.08 0.76 6.80 -51.93 -0.35 0.41 16 49 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 52 H 0.11 1.39 7.70 -51.93 -0.40 0.99 16 LS Contribution 404.75 15.07 6.10 6.10 Total: -1.00 -29.17 404.75 -11.65 -40.82 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.66 Total: 10.09 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -4.97 Total: -11.00 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 0.37 Total: -53.93 kcal Atomic # 8 Polarization: -6.37 SS G_CDS: -0.47 Total: -6.84 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.17 -11.65 -40.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342390567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.213 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds