Wall clock time and date at job start Wed Apr 1 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50702 * 119.99620 * 2 1 4 4 C 1.50695 * 120.00193 * 180.02562 * 2 1 3 5 5 N 1.46497 * 109.47187 * 92.62515 * 4 2 1 6 6 C 1.36456 * 127.13685 * 278.67757 * 5 4 2 7 7 N 1.38573 * 126.47406 * 0.03150 * 6 5 4 8 8 C 1.46906 * 110.99932 * 98.12433 * 7 6 5 9 9 C 1.50694 * 109.47452 * 204.15147 * 8 7 6 10 10 H 1.08001 * 119.99764 * 5.26832 * 9 8 7 11 11 C 1.37881 * 120.00072 * 185.27218 * 9 8 7 12 12 N 1.31515 * 119.99804 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99866 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47024 * 90.00033 * 13 11 9 15 15 H 1.48498 * 109.46770 * 209.99506 * 13 11 9 16 16 H 1.48494 * 109.46970 * 329.99768 * 13 11 9 17 17 C 1.46903 * 111.00451 * 222.07666 * 7 6 5 18 18 C 1.52994 * 109.47059 * 161.23917 * 17 7 6 19 19 C 1.52999 * 117.51899 * 113.53398 * 18 17 7 20 20 C 1.52998 * 60.00204 * 107.48267 * 19 18 17 21 21 N 1.31222 * 107.05402 * 179.77403 * 6 5 4 22 22 N 1.28532 * 109.85720 * 0.22871 * 21 6 5 23 23 C 1.30296 * 110.05486 * 359.97438 * 22 21 6 24 24 C 1.50697 * 126.34487 * 180.02562 * 23 22 21 25 25 O 1.42898 * 112.84904 * 234.09578 * 24 23 22 26 26 C 1.53787 * 113.61433 * 102.90102 * 24 23 22 27 27 C 1.53953 * 87.01962 * 220.04405 * 26 24 23 28 28 C 1.53782 * 87.11216 * 25.36418 * 27 26 24 29 29 H 1.07991 * 119.99686 * 4.93998 * 1 2 3 30 30 H 1.08000 * 119.99689 * 184.94543 * 1 2 3 31 31 H 1.09003 * 109.46879 * 246.39855 * 3 2 1 32 32 H 1.08999 * 109.47502 * 6.40214 * 3 2 1 33 33 H 1.09002 * 109.46704 * 126.40397 * 3 2 1 34 34 H 1.09007 * 109.47120 * 332.63024 * 4 2 1 35 35 H 1.08994 * 109.47414 * 212.62880 * 4 2 1 36 36 H 1.09002 * 109.47098 * 324.15100 * 8 7 6 37 37 H 1.09004 * 109.47145 * 84.14715 * 8 7 6 38 38 H 0.97000 * 119.99813 * 179.97438 * 12 11 9 39 39 H 1.08996 * 109.46523 * 41.23914 * 17 7 6 40 40 H 1.08997 * 109.46997 * 281.24208 * 17 7 6 41 41 H 1.09003 * 115.55560 * 327.82888 * 18 17 7 42 42 H 1.09003 * 117.49960 * 214.96669 * 19 18 17 43 43 H 1.09000 * 117.49980 * 359.97438 * 19 18 17 44 44 H 1.09009 * 117.49604 * 252.51676 * 20 19 18 45 45 H 1.08995 * 117.50489 * 107.49264 * 20 19 18 46 46 H 0.96695 * 114.00206 * 305.27309 * 25 24 23 47 47 H 1.08996 * 113.61439 * 334.56969 * 26 24 23 48 48 H 1.09000 * 113.61329 * 105.46793 * 26 24 23 49 49 H 1.08993 * 113.54202 * 270.81132 * 27 26 24 50 50 H 1.08999 * 113.66208 * 139.93100 * 27 26 24 51 51 H 1.08994 * 113.61426 * 220.08795 * 28 27 26 52 52 H 1.09001 * 113.61357 * 89.18299 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 7 2.3626 -1.6957 -1.3805 6 6 1.5252 -2.3172 -2.2606 7 7 0.2164 -2.7035 -2.0197 8 6 -0.7307 -1.7115 -2.5460 9 6 -2.0344 -1.8148 -1.7973 10 1 -2.1213 -2.4842 -0.9542 11 6 -3.1163 -1.0550 -2.1887 12 7 -3.0103 -0.2396 -3.2152 13 14 -4.7326 -1.1837 -1.2610 14 1 -4.7500 -0.1907 -0.1570 15 1 -5.8591 -0.9114 -2.1894 16 1 -4.8734 -2.5511 -0.6994 17 6 -0.0511 -4.0352 -2.5792 18 6 -1.2992 -4.6245 -1.9191 19 6 -2.5339 -4.8302 -2.7989 20 6 -1.7171 -6.0370 -2.3327 21 7 2.1916 -2.4750 -3.3799 22 7 3.3792 -2.0004 -3.2516 23 6 3.5394 -1.5153 -2.0530 24 6 4.7885 -0.8702 -1.5102 25 8 5.2392 -1.4700 -0.2940 26 6 4.7124 0.6646 -1.4489 27 6 6.1761 0.6760 -1.9258 28 6 5.8987 -0.6971 -2.5602 29 1 -0.5399 0.9318 -0.0805 30 1 -0.5400 -0.9319 0.0806 31 1 2.6015 1.4141 -0.9417 32 1 1.3608 2.1304 0.1146 33 1 2.7734 1.3149 0.8272 34 1 1.4549 -2.0763 0.4716 35 1 2.9948 -1.1872 0.5535 36 1 -0.3170 -0.7110 -2.4189 37 1 -0.9040 -1.9010 -3.6054 38 1 -3.7715 0.2947 -3.4908 39 1 0.8020 -4.6867 -2.3900 40 1 -0.2133 -3.9519 -3.6538 41 1 -1.4634 -4.3347 -0.8812 42 1 -3.5104 -4.6759 -2.3399 43 1 -2.4573 -4.5454 -3.8483 44 1 -1.1029 -6.5463 -3.0754 45 1 -2.1561 -6.6765 -1.5670 46 1 4.5689 -1.4991 0.4022 47 1 4.0156 1.0962 -2.1674 48 1 4.5778 1.0551 -0.4402 49 1 6.8996 0.6425 -1.1113 50 1 6.3929 1.4575 -2.6540 51 1 6.7204 -1.4043 -2.4474 52 1 5.5268 -0.6384 -3.5831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342390567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:19 Heat of formation + Delta-G solvation = 100.811201 kcal Electronic energy + Delta-G solvation = -32974.286725 eV Core-core repulsion = 28977.530109 eV Total energy + Delta-G solvation = -3996.756616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 6.65 seconds Orbital eigenvalues (eV) -44.10156 -40.49821 -39.32967 -37.82582 -36.77447 -35.87231 -34.69246 -34.28896 -31.20223 -29.50949 -28.63221 -28.12125 -27.15168 -26.55662 -26.12251 -24.32362 -23.08348 -22.69819 -21.95928 -21.17805 -20.74723 -19.84035 -18.80121 -18.27150 -17.57461 -17.33144 -17.06868 -16.84001 -16.45942 -16.25066 -16.02818 -15.51078 -15.33220 -15.05291 -14.81140 -14.68787 -14.43786 -14.19905 -13.96082 -13.61048 -13.25135 -13.09728 -12.97988 -12.92998 -12.81766 -12.67521 -12.64819 -12.44081 -12.33972 -12.25747 -12.22829 -11.95624 -11.83186 -11.70414 -11.47697 -11.43615 -11.13914 -11.00719 -10.98032 -10.71554 -10.47265 -10.19317 -10.01257 -9.52070 -8.12212 -6.17619 0.60786 0.94469 1.43305 1.46089 1.54313 1.64274 1.71243 2.43306 2.80822 2.88142 3.03989 3.17775 3.23868 3.38270 3.49612 3.68805 3.75232 3.82468 3.97299 4.02266 4.12623 4.16591 4.30241 4.38208 4.40346 4.51785 4.55019 4.60068 4.72273 4.73465 4.75543 4.78967 4.84880 4.87158 4.97223 4.99621 5.07715 5.09144 5.10570 5.11200 5.13003 5.17745 5.18966 5.37455 5.44054 5.46911 5.61165 5.73095 5.79134 5.88212 5.97684 6.09115 6.43512 6.53123 6.91918 7.48666 7.66844 8.99629 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012942 B = 0.004066 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.010017 B = 6884.045894 C = 8065.827827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.187 4.187 3 C -0.116 4.116 4 C 0.151 3.849 5 N -0.453 5.453 6 C 0.362 3.638 7 N -0.451 5.451 8 C 0.238 3.762 9 C -0.472 4.472 10 H 0.078 0.922 11 C 0.015 3.985 12 N -0.937 5.937 13 Si 0.949 3.051 14 H -0.276 1.276 15 H -0.296 1.296 16 H -0.257 1.257 17 C 0.121 3.879 18 C -0.126 4.126 19 C -0.169 4.169 20 C -0.162 4.162 21 N -0.364 5.364 22 N -0.310 5.310 23 C 0.158 3.842 24 C 0.191 3.809 25 O -0.528 6.528 26 C -0.152 4.152 27 C -0.118 4.118 28 C -0.113 4.113 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.000 1.000 37 H -0.038 1.038 38 H 0.259 0.741 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.386 0.614 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.104 0.896 50 H 0.087 0.913 51 H 0.084 0.916 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.523 -0.220 10.961 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.188 4.188 3 C -0.173 4.173 4 C 0.031 3.969 5 N -0.145 5.145 6 C 0.005 3.995 7 N -0.176 5.176 8 C 0.114 3.886 9 C -0.511 4.511 10 H 0.096 0.904 11 C -0.183 4.183 12 N -0.578 5.578 13 Si 0.775 3.225 14 H -0.201 1.201 15 H -0.223 1.223 16 H -0.181 1.181 17 C -0.007 4.007 18 C -0.145 4.145 19 C -0.206 4.206 20 C -0.200 4.200 21 N -0.209 5.209 22 N -0.151 5.151 23 C -0.111 4.111 24 C 0.147 3.853 25 O -0.336 6.336 26 C -0.190 4.190 27 C -0.155 4.155 28 C -0.151 4.151 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.018 0.982 37 H -0.021 1.021 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.039 0.961 41 H 0.126 0.874 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.238 0.762 47 H 0.096 0.904 48 H 0.124 0.876 49 H 0.122 0.878 50 H 0.106 0.894 51 H 0.103 0.897 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 14.215 -0.599 9.666 17.200 hybrid contribution -2.397 0.603 0.277 2.487 sum 11.818 0.004 9.942 15.444 Atomic orbital electron populations 1.24099 0.95611 1.02657 0.93844 1.21761 0.95196 0.95581 1.06243 1.21067 1.00495 0.93015 1.02691 1.21006 1.02394 0.95956 0.77592 1.46588 1.09930 1.44098 1.13856 1.22935 0.93028 0.97499 0.86073 1.59068 0.95273 1.04779 1.58486 1.19403 0.89770 0.87681 0.91783 1.21070 0.93748 1.22568 1.13688 0.90436 1.25614 1.01748 0.95248 0.95698 1.70114 1.32005 1.27572 1.28139 0.85685 0.79396 0.79202 0.78249 1.20141 1.22298 1.18120 1.21402 0.97108 0.86786 0.95373 1.21915 0.94385 0.98333 0.99833 1.22706 0.96121 1.02755 0.99036 1.23117 1.02972 0.90192 1.03684 1.74610 1.01745 1.24000 1.20512 1.73759 1.10961 1.13982 1.16412 1.25919 0.90253 1.03828 0.91075 1.20730 0.86259 0.91320 0.86973 1.86609 1.41895 1.82742 1.22325 1.23826 0.98875 0.92335 1.03959 1.22810 0.95512 0.96055 1.01154 1.22980 0.96104 0.99011 0.97007 0.89367 0.87735 0.92152 0.92157 0.88615 0.87608 0.85808 0.98245 1.02058 0.93244 0.91395 0.96091 0.87405 0.89576 0.91278 0.88614 0.86890 0.76230 0.90448 0.87645 0.87785 0.89395 0.89702 0.89101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 11.74 67.77 0.80 -3.33 16 2 C -0.19 -5.04 5.63 -16.50 -0.09 -5.13 16 3 C -0.12 -2.45 9.07 71.24 0.65 -1.80 16 4 C 0.15 3.72 6.21 85.63 0.53 4.25 16 5 N -0.45 -14.95 2.79 -518.93 -1.45 -16.40 16 6 C 0.36 15.03 6.37 260.11 1.66 16.69 16 7 N -0.45 -18.95 4.44 -710.36 -3.15 -22.10 16 8 C 0.24 11.95 3.89 85.55 0.33 12.29 16 9 C -0.47 -23.14 5.98 25.60 0.15 -22.99 16 10 H 0.08 3.63 6.11 -2.91 -0.02 3.61 16 11 C 0.01 0.77 5.46 84.66 0.46 1.23 16 12 N -0.94 -53.84 13.29 21.45 0.28 -53.55 16 13 Si 0.95 41.08 29.54 68.60 2.03 43.11 16 14 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 17 C 0.12 4.79 4.95 86.30 0.43 5.22 16 18 C -0.13 -4.44 4.07 -10.80 -0.04 -4.48 16 19 C -0.17 -6.02 9.63 30.59 0.29 -5.73 16 20 C -0.16 -4.58 10.25 30.59 0.31 -4.27 16 21 N -0.36 -16.63 11.87 -58.00 -0.69 -17.32 16 22 N -0.31 -12.69 11.46 -49.54 -0.57 -13.26 16 23 C 0.16 5.19 7.06 137.64 0.97 6.16 16 24 C 0.19 4.47 1.46 -11.01 -0.02 4.45 16 25 O -0.53 -10.58 13.38 -148.98 -1.99 -12.58 16 26 C -0.15 -2.81 5.69 31.18 0.18 -2.63 16 27 C -0.12 -1.85 8.02 31.18 0.25 -1.60 16 28 C -0.11 -2.48 7.31 31.12 0.23 -2.25 16 29 H 0.09 3.07 7.86 -2.92 -0.02 3.04 16 30 H 0.10 3.91 6.40 -2.91 -0.02 3.89 16 31 H 0.06 1.36 5.11 -2.39 -0.01 1.35 16 32 H 0.06 1.31 7.81 -2.39 -0.02 1.29 16 33 H 0.10 1.33 7.81 -2.39 -0.02 1.31 16 34 H 0.11 2.65 8.00 -2.38 -0.02 2.63 16 35 H 0.12 1.91 5.10 -2.39 -0.01 1.90 16 36 H 0.00 -0.02 6.53 -2.39 -0.02 -0.04 16 37 H -0.04 -2.30 7.65 -2.38 -0.02 -2.31 16 38 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 39 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 40 H 0.02 0.93 7.45 -2.39 -0.02 0.92 16 41 H 0.11 3.86 7.06 -2.39 -0.02 3.84 16 42 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.07 2.71 8.04 -2.39 -0.02 2.69 16 44 H 0.10 2.52 8.14 -2.38 -0.02 2.51 16 45 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.39 5.35 6.19 -74.06 -0.46 4.89 16 47 H 0.08 1.75 7.13 -2.39 -0.02 1.73 16 48 H 0.11 1.45 6.80 -2.39 -0.02 1.43 16 49 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 50 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 52 H 0.09 2.31 7.70 -2.39 -0.02 2.29 16 Total: -1.00 -68.23 404.75 2.03 -66.20 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.48 Total: 29.80 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 7.09 Total: -3.91 kcal Atomic # 7 Polarization: -117.05 SS G_CDS: -5.57 Total: -122.63 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.99 Total: -12.58 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -68.23 2.03 -66.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342390567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.012 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.65 seconds