Wall clock time and date at job start Wed Apr 1 2020 05:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50693 * 120.00286 * 2 1 4 4 C 1.50703 * 119.99659 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.47289 * 95.00109 * 4 2 1 6 6 C 1.36736 * 127.13461 * 90.02174 * 5 4 2 7 7 C 1.50700 * 126.34937 * 359.94416 * 6 5 4 8 8 C 1.53001 * 109.46950 * 89.99996 * 7 6 5 9 9 H 1.09002 * 109.47346 * 54.99959 * 8 7 6 10 10 O 1.42899 * 109.47111 * 295.00401 * 8 7 6 11 11 C 1.50701 * 109.47288 * 175.00029 * 8 7 6 12 12 H 1.08000 * 119.99446 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00114 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00145 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00004 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47106 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47151 * 119.99903 * 15 13 11 18 18 H 1.48502 * 109.47379 * 240.00268 * 15 13 11 19 19 N 1.30293 * 107.30393 * 179.97438 * 6 5 4 20 20 N 1.28526 * 110.05379 * 359.97438 * 19 6 5 21 21 C 1.31218 * 109.86186 * 359.74762 * 20 19 6 22 22 N 1.38583 * 126.47636 * 180.25515 * 21 20 19 23 23 C 1.47954 * 110.99486 * 120.99022 * 22 21 20 24 24 C 1.55138 * 104.95505 * 213.85048 * 23 22 21 25 25 C 1.53934 * 101.50186 * 35.80722 * 24 23 22 26 26 C 1.52516 * 115.77123 * 94.95953 * 25 24 23 27 27 C 1.54015 * 86.68488 * 93.30784 * 26 25 24 28 28 C 1.52505 * 115.78813 * 196.43773 * 25 24 23 29 29 C 1.47752 * 110.99768 * 0.17414 * 22 21 20 30 30 H 1.07997 * 120.00386 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99842 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47111 * 269.99904 * 3 2 1 33 33 H 1.08998 * 109.47336 * 30.00254 * 3 2 1 34 34 H 1.09004 * 109.47496 * 150.00314 * 3 2 1 35 35 H 1.09001 * 109.47438 * 334.99890 * 4 2 1 36 36 H 1.09004 * 109.47113 * 215.00145 * 4 2 1 37 37 H 1.09001 * 109.47228 * 209.99558 * 7 6 5 38 38 H 1.09002 * 109.47131 * 330.00184 * 7 6 5 39 39 H 0.96701 * 113.99792 * 299.99754 * 10 8 7 40 40 H 0.97001 * 120.00162 * 180.02562 * 14 13 11 41 41 H 1.08997 * 110.34379 * 332.71593 * 23 22 21 42 42 H 1.08996 * 110.34103 * 94.98428 * 23 22 21 43 43 H 1.09007 * 111.01440 * 277.75046 * 24 23 22 44 44 H 1.08996 * 111.05141 * 153.87942 * 24 23 22 45 45 H 1.09004 * 113.67934 * 207.75214 * 26 25 24 46 46 H 1.09001 * 113.68256 * 338.85651 * 26 25 24 47 47 H 1.09007 * 113.57038 * 269.86938 * 27 26 25 48 48 H 1.09000 * 113.57672 * 139.08712 * 27 26 25 49 49 H 1.09006 * 113.68095 * 21.15607 * 28 25 24 50 50 H 1.09005 * 113.67985 * 152.26248 * 28 25 24 51 51 H 1.08998 * 109.97922 * 243.48899 * 29 22 21 52 52 H 1.08997 * 109.98418 * 4.74458 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6686 -1.3753 6 6 3.5488 -1.3307 -2.0555 7 6 4.6932 -0.5043 -1.5278 8 6 5.7240 -1.4228 -0.8685 9 1 6.0332 -2.1903 -1.5780 10 8 5.1437 -2.0426 0.2808 11 6 6.9240 -0.6127 -0.4503 12 1 6.9490 0.4509 -0.6366 13 6 7.9903 -1.2294 0.1690 14 7 7.9600 -2.5245 0.3953 15 14 9.4780 -0.2254 0.6867 16 1 9.2659 1.1982 0.3211 17 1 9.6638 -0.3373 2.1559 18 1 10.6871 -0.7389 -0.0058 19 7 3.4592 -1.8552 -3.2448 20 7 2.3517 -2.4969 -3.3612 21 6 1.6722 -2.4201 -2.2413 22 7 0.4353 -2.9912 -1.9873 23 6 0.5071 -3.9232 -0.8404 24 6 -0.5042 -5.0505 -1.1767 25 6 -0.3396 -5.1653 -2.7029 26 6 0.6331 -6.2359 -3.1862 27 6 -0.5865 -7.1708 -3.2890 28 6 -1.4528 -5.9060 -3.4364 29 6 -0.0573 -3.7335 -3.1660 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2452 1.6196 -1.0276 33 1 1.4745 2.0647 0.5139 34 1 3.0159 1.1747 0.5138 35 1 1.4384 -2.0853 0.4353 36 1 2.9741 -1.1987 0.5900 37 1 5.1614 0.0356 -2.3509 38 1 4.3183 0.2079 -0.7926 39 1 4.8450 -1.4180 0.9559 40 1 8.7100 -2.9584 0.8314 41 1 1.5131 -4.3322 -0.7470 42 1 0.2165 -3.4154 0.0792 43 1 -1.5202 -4.7553 -0.9141 44 1 -0.2301 -5.9826 -0.6826 45 1 1.0923 -6.0081 -4.1482 46 1 1.3573 -6.5424 -2.4314 47 1 -0.7846 -7.7308 -2.3750 48 1 -0.5794 -7.8005 -4.1786 49 1 -2.3896 -5.9498 -2.8808 50 1 -1.5857 -5.5845 -4.4695 51 1 -0.9733 -3.2751 -3.5388 52 1 0.7021 -3.7370 -3.9480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342778948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:31 Heat of formation + Delta-G solvation = 76.392124 kcal Electronic energy + Delta-G solvation = -32271.900116 eV Core-core repulsion = 28274.084609 eV Total energy + Delta-G solvation = -3997.815507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.58123 -40.48686 -36.93444 -36.77016 -35.90403 -33.13785 -32.20987 -31.78378 -30.32125 -28.44153 -27.50634 -27.47405 -26.70855 -25.93064 -25.27016 -22.70727 -22.50780 -21.66343 -20.51024 -19.98375 -18.80614 -18.48630 -17.31364 -16.86556 -16.15519 -15.93829 -15.60482 -15.30769 -14.91321 -14.70986 -14.59128 -14.37875 -14.10708 -13.80008 -13.51288 -13.23802 -13.15145 -13.07782 -12.77232 -12.64963 -12.38628 -12.13846 -12.01791 -11.96539 -11.69153 -11.44660 -11.31232 -11.30084 -11.09485 -10.99688 -10.84215 -10.77052 -10.60173 -10.44900 -10.34493 -10.13947 -10.04048 -9.70837 -9.53088 -9.27065 -9.07624 -8.64419 -8.39836 -7.74225 -6.07286 -4.26692 1.88249 2.23353 2.86393 3.23506 3.31998 3.33644 3.37357 3.89367 4.17217 4.21430 4.33686 4.41521 4.59332 4.65357 4.66809 4.68782 5.00866 5.04501 5.10622 5.14542 5.18446 5.21098 5.33012 5.45314 5.47702 5.50471 5.53911 5.58804 5.62687 5.65532 5.67881 5.71195 5.75735 5.80153 5.80931 5.87167 5.98363 5.98976 6.12559 6.15112 6.24791 6.29724 6.35045 6.37559 6.46759 6.67097 6.69167 6.77312 6.98259 7.53641 7.64291 7.76753 8.06003 8.75132 9.20425 9.31280 9.49345 10.96800 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003225 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.490689 B = 8680.707508 C = 9817.430943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.148 4.148 3 C -0.121 4.121 4 C 0.144 3.856 5 N -0.464 5.464 6 C 0.220 3.780 7 C -0.065 4.065 8 C 0.237 3.763 9 H 0.064 0.936 10 O -0.562 6.562 11 C -0.572 4.572 12 H 0.060 0.940 13 C 0.081 3.919 14 N -0.856 5.856 15 Si 0.890 3.110 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.282 1.282 19 N -0.299 5.299 20 N -0.328 5.328 21 C 0.337 3.663 22 N -0.440 5.440 23 C 0.041 3.959 24 C -0.102 4.102 25 C -0.101 4.101 26 C -0.128 4.128 27 C -0.140 4.140 28 C -0.121 4.121 29 C 0.062 3.938 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.338 0.662 40 H 0.261 0.739 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.085 0.915 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.714 -2.302 -0.146 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.149 4.149 3 C -0.177 4.177 4 C 0.021 3.979 5 N -0.157 5.157 6 C -0.048 4.048 7 C -0.106 4.106 8 C 0.179 3.821 9 H 0.081 0.919 10 O -0.365 6.365 11 C -0.610 4.610 12 H 0.078 0.922 13 C -0.126 4.126 14 N -0.492 5.492 15 Si 0.718 3.282 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.208 1.208 19 N -0.137 5.137 20 N -0.172 5.172 21 C -0.020 4.020 22 N -0.164 5.164 23 C -0.086 4.086 24 C -0.140 4.140 25 C -0.102 4.102 26 C -0.165 4.165 27 C -0.177 4.177 28 C -0.159 4.159 29 C -0.065 4.065 30 H 0.120 0.880 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.182 0.818 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.105 0.895 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.102 0.898 51 H 0.103 0.897 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.453 -2.980 -1.734 20.741 hybrid contribution 0.893 0.874 1.797 2.188 sum -19.560 -2.107 0.063 19.673 Atomic orbital electron populations 1.23796 0.95019 1.02185 0.98864 1.21904 0.95644 0.95501 1.01849 1.20912 1.00458 0.93905 1.02435 1.20959 1.01697 0.94845 0.80385 1.46035 1.16423 1.40207 1.13085 1.25166 0.89073 1.01330 0.89209 1.21232 0.91003 0.97134 1.01181 1.19418 0.87146 0.91285 0.84255 0.91873 1.86663 1.81524 1.37466 1.30805 1.21602 1.02326 0.94972 1.42118 0.92197 1.25034 0.98011 0.94707 0.94852 1.70090 1.30620 1.08827 1.39644 0.86591 0.82863 0.80527 0.78259 1.19590 1.20923 1.20824 1.73957 1.11748 1.12231 1.15805 1.74338 1.01712 1.21330 1.19795 1.22537 0.91607 0.98878 0.88968 1.60406 1.16955 1.31665 1.07363 1.23257 0.99881 0.92136 0.93360 1.22388 0.99568 0.98149 0.93885 1.22193 0.98198 0.94325 0.95528 1.22831 0.96154 0.95475 1.02026 1.22883 0.96621 0.96321 1.01907 1.22703 0.96648 0.95890 1.00645 1.22745 1.01587 0.90430 0.91769 0.87972 0.88208 0.91450 0.91670 0.90985 0.88830 0.87277 0.88693 0.90891 0.81813 0.92962 0.92235 0.89612 0.89971 0.90141 0.89482 0.91425 0.90341 0.91439 0.91214 0.89757 0.89708 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 13.89 29.02 0.40 -1.31 16 2 C -0.15 -1.79 5.63 -101.07 -0.57 -2.36 16 3 C -0.12 -1.38 9.25 36.00 0.33 -1.05 16 4 C 0.14 1.97 5.94 -5.19 -0.03 1.94 16 5 N -0.46 -7.95 2.79 -115.36 -0.32 -8.27 16 6 C 0.22 4.43 7.09 -154.02 -1.09 3.34 16 7 C -0.07 -1.30 5.05 -27.88 -0.14 -1.45 16 8 C 0.24 5.78 2.81 -27.88 -0.08 5.70 16 9 H 0.06 1.81 8.14 -51.93 -0.42 1.38 16 10 O -0.56 -13.32 11.65 -35.23 -0.41 -13.73 16 11 C -0.57 -14.94 8.76 -34.44 -0.30 -15.24 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 14 N -0.86 -24.73 12.84 55.43 0.71 -24.02 16 15 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 N -0.30 -6.66 12.18 32.99 0.40 -6.26 16 20 N -0.33 -6.70 10.48 30.31 0.32 -6.38 16 21 C 0.34 5.88 6.98 -318.87 -2.23 3.65 16 22 N -0.44 -6.00 5.23 -171.56 -0.90 -6.90 16 23 C 0.04 0.47 5.53 -2.11 -0.01 0.46 16 24 C -0.10 -0.92 6.24 -25.11 -0.16 -1.08 16 25 C -0.10 -1.00 0.94 -154.49 -0.14 -1.15 16 26 C -0.13 -1.35 7.31 -26.45 -0.19 -1.54 16 27 C -0.14 -1.14 7.96 -25.70 -0.20 -1.35 16 28 C -0.12 -0.96 7.39 -26.45 -0.20 -1.16 16 29 C 0.06 0.76 6.31 -3.29 -0.02 0.74 16 30 H 0.10 1.05 7.99 -52.49 -0.42 0.63 16 31 H 0.10 0.93 8.04 -52.48 -0.42 0.51 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 34 H 0.07 0.84 7.20 -51.93 -0.37 0.46 16 35 H 0.09 1.14 5.28 -51.93 -0.27 0.86 16 36 H 0.11 1.55 5.45 -51.93 -0.28 1.27 16 37 H 0.09 1.91 8.14 -51.93 -0.42 1.48 16 38 H 0.07 1.28 6.15 -51.93 -0.32 0.96 16 39 H 0.34 6.86 7.67 45.56 0.35 7.21 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 42 H 0.09 0.86 6.69 -51.93 -0.35 0.51 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 45 H 0.09 1.00 8.01 -51.93 -0.42 0.58 16 46 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 47 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 50 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 51 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 52 H 0.10 1.41 6.07 -51.93 -0.32 1.10 16 LS Contribution 408.32 15.07 6.15 6.15 Total: -1.00 -32.14 408.32 -11.62 -43.75 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.83 Total: 9.88 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -4.73 Total: -9.75 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.21 Total: -51.84 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.41 Total: -13.73 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.14 -11.62 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342778948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.146 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds