Wall clock time and date at job start Wed Apr 1 2020 05:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50693 * 120.00286 * 2 1 4 4 C 1.50703 * 119.99659 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.47289 * 95.00109 * 4 2 1 6 6 C 1.36736 * 127.13461 * 90.02174 * 5 4 2 7 7 C 1.50700 * 126.34937 * 359.94416 * 6 5 4 8 8 C 1.53001 * 109.46950 * 89.99996 * 7 6 5 9 9 H 1.09002 * 109.47346 * 54.99959 * 8 7 6 10 10 O 1.42899 * 109.47111 * 295.00401 * 8 7 6 11 11 C 1.50701 * 109.47288 * 175.00029 * 8 7 6 12 12 H 1.08000 * 119.99446 * 359.97438 * 11 8 7 13 13 C 1.37873 * 120.00114 * 180.02562 * 11 8 7 14 14 N 1.31511 * 120.00145 * 359.97438 * 13 11 8 15 15 Si 1.86797 * 120.00004 * 179.97438 * 13 11 8 16 16 H 1.48498 * 109.47106 * 359.97438 * 15 13 11 17 17 H 1.48506 * 109.47151 * 119.99903 * 15 13 11 18 18 H 1.48502 * 109.47379 * 240.00268 * 15 13 11 19 19 N 1.30293 * 107.30393 * 179.97438 * 6 5 4 20 20 N 1.28526 * 110.05379 * 359.97438 * 19 6 5 21 21 C 1.31218 * 109.86186 * 359.74762 * 20 19 6 22 22 N 1.38583 * 126.47636 * 180.25515 * 21 20 19 23 23 C 1.47954 * 110.99486 * 120.99022 * 22 21 20 24 24 C 1.55138 * 104.95505 * 213.85048 * 23 22 21 25 25 C 1.53934 * 101.50186 * 35.80722 * 24 23 22 26 26 C 1.52516 * 115.77123 * 94.95953 * 25 24 23 27 27 C 1.54015 * 86.68488 * 93.30784 * 26 25 24 28 28 C 1.52505 * 115.78813 * 196.43773 * 25 24 23 29 29 C 1.47752 * 110.99768 * 0.17414 * 22 21 20 30 30 H 1.07997 * 120.00386 * 180.02562 * 1 2 3 31 31 H 1.08003 * 119.99842 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47111 * 269.99904 * 3 2 1 33 33 H 1.08998 * 109.47336 * 30.00254 * 3 2 1 34 34 H 1.09004 * 109.47496 * 150.00314 * 3 2 1 35 35 H 1.09001 * 109.47438 * 334.99890 * 4 2 1 36 36 H 1.09004 * 109.47113 * 215.00145 * 4 2 1 37 37 H 1.09001 * 109.47228 * 209.99558 * 7 6 5 38 38 H 1.09002 * 109.47131 * 330.00184 * 7 6 5 39 39 H 0.96701 * 113.99792 * 299.99754 * 10 8 7 40 40 H 0.97001 * 120.00162 * 180.02562 * 14 13 11 41 41 H 1.08997 * 110.34379 * 332.71593 * 23 22 21 42 42 H 1.08996 * 110.34103 * 94.98428 * 23 22 21 43 43 H 1.09007 * 111.01440 * 277.75046 * 24 23 22 44 44 H 1.08996 * 111.05141 * 153.87942 * 24 23 22 45 45 H 1.09004 * 113.67934 * 207.75214 * 26 25 24 46 46 H 1.09001 * 113.68256 * 338.85651 * 26 25 24 47 47 H 1.09007 * 113.57038 * 269.86938 * 27 26 25 48 48 H 1.09000 * 113.57672 * 139.08712 * 27 26 25 49 49 H 1.09006 * 113.68095 * 21.15607 * 28 25 24 50 50 H 1.09005 * 113.67985 * 152.26248 * 28 25 24 51 51 H 1.08998 * 109.97922 * 243.48899 * 29 22 21 52 52 H 1.08997 * 109.98418 * 4.74458 * 29 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 7 2.4118 -1.6686 -1.3753 6 6 3.5488 -1.3307 -2.0555 7 6 4.6932 -0.5043 -1.5278 8 6 5.7240 -1.4228 -0.8685 9 1 6.0332 -2.1903 -1.5780 10 8 5.1437 -2.0426 0.2808 11 6 6.9240 -0.6127 -0.4503 12 1 6.9490 0.4509 -0.6366 13 6 7.9903 -1.2294 0.1690 14 7 7.9600 -2.5245 0.3953 15 14 9.4780 -0.2254 0.6867 16 1 9.2659 1.1982 0.3211 17 1 9.6638 -0.3373 2.1559 18 1 10.6871 -0.7389 -0.0058 19 7 3.4592 -1.8552 -3.2448 20 7 2.3517 -2.4969 -3.3612 21 6 1.6722 -2.4201 -2.2413 22 7 0.4353 -2.9912 -1.9873 23 6 0.5071 -3.9232 -0.8404 24 6 -0.5042 -5.0505 -1.1767 25 6 -0.3396 -5.1653 -2.7029 26 6 0.6331 -6.2359 -3.1862 27 6 -0.5865 -7.1708 -3.2890 28 6 -1.4528 -5.9060 -3.4364 29 6 -0.0573 -3.7335 -3.1660 30 1 -0.5400 -0.9352 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2452 1.6196 -1.0276 33 1 1.4745 2.0647 0.5139 34 1 3.0159 1.1747 0.5138 35 1 1.4384 -2.0853 0.4353 36 1 2.9741 -1.1987 0.5900 37 1 5.1614 0.0356 -2.3509 38 1 4.3183 0.2079 -0.7926 39 1 4.8450 -1.4180 0.9559 40 1 8.7100 -2.9584 0.8314 41 1 1.5131 -4.3322 -0.7470 42 1 0.2165 -3.4154 0.0792 43 1 -1.5202 -4.7553 -0.9141 44 1 -0.2301 -5.9826 -0.6826 45 1 1.0923 -6.0081 -4.1482 46 1 1.3573 -6.5424 -2.4314 47 1 -0.7846 -7.7308 -2.3750 48 1 -0.5794 -7.8005 -4.1786 49 1 -2.3896 -5.9498 -2.8808 50 1 -1.5857 -5.5845 -4.4695 51 1 -0.9733 -3.2751 -3.5388 52 1 0.7021 -3.7370 -3.9480 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342778948.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:29 Heat of formation + Delta-G solvation = 58.265642 kcal Electronic energy + Delta-G solvation = -32272.686139 eV Core-core repulsion = 28274.084609 eV Total energy + Delta-G solvation = -3998.601530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.01559 -41.37620 -38.30045 -37.96473 -37.31660 -34.42473 -34.24254 -33.23755 -31.56070 -29.56377 -28.96606 -28.45105 -27.77957 -27.10749 -26.67395 -23.79990 -23.67001 -23.12383 -21.84389 -21.40280 -19.83292 -19.36852 -19.14620 -18.14401 -17.42837 -17.22164 -16.69781 -16.51801 -16.34049 -16.20852 -15.68817 -15.65389 -15.52775 -15.13933 -14.91464 -14.46160 -14.41992 -14.11174 -13.97140 -13.67860 -13.35508 -13.27476 -13.10269 -13.00123 -12.96188 -12.85443 -12.74638 -12.67950 -12.47382 -12.41107 -12.22079 -12.03441 -11.94893 -11.59778 -11.32422 -11.30844 -11.17366 -11.11695 -10.98399 -10.74379 -10.71447 -10.20462 -10.16923 -9.19494 -8.14298 -6.40660 0.79611 0.89933 1.41291 1.43895 1.55383 1.66409 1.83151 2.39805 2.73524 3.12152 3.29507 3.37009 3.50395 3.59009 3.61517 3.70824 3.88233 3.92466 3.97198 4.09542 4.13069 4.17330 4.29395 4.33486 4.39056 4.49579 4.52646 4.58033 4.67998 4.74345 4.78298 4.79000 4.81415 4.85656 4.88363 4.93249 4.96539 5.00524 5.03224 5.09539 5.11577 5.16163 5.19621 5.33200 5.46897 5.53853 5.57992 5.60955 5.64669 5.69739 5.81663 6.01362 6.22196 6.71003 7.30746 7.47995 7.80181 8.90467 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013096 B = 0.003225 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.490689 B = 8680.707508 C = 9817.430943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.169 4.169 3 C -0.118 4.118 4 C 0.138 3.862 5 N -0.458 5.458 6 C 0.206 3.794 7 C -0.047 4.047 8 C 0.246 3.754 9 H 0.008 0.992 10 O -0.572 6.572 11 C -0.580 4.580 12 H 0.070 0.930 13 C 0.027 3.973 14 N -0.900 5.900 15 Si 0.961 3.039 16 H -0.258 1.258 17 H -0.278 1.278 18 H -0.286 1.286 19 N -0.340 5.340 20 N -0.363 5.363 21 C 0.350 3.650 22 N -0.431 5.431 23 C 0.038 3.962 24 C -0.090 4.090 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.109 4.109 29 C 0.057 3.943 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.355 0.645 40 H 0.260 0.740 41 H 0.027 0.973 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.067 0.933 46 H 0.049 0.951 47 H 0.091 0.909 48 H 0.072 0.928 49 H 0.092 0.908 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.618 -1.442 1.570 23.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.170 4.170 3 C -0.175 4.175 4 C 0.018 3.982 5 N -0.151 5.151 6 C -0.063 4.063 7 C -0.087 4.087 8 C 0.187 3.813 9 H 0.026 0.974 10 O -0.377 6.377 11 C -0.618 4.618 12 H 0.088 0.912 13 C -0.176 4.176 14 N -0.537 5.537 15 Si 0.786 3.214 16 H -0.182 1.182 17 H -0.203 1.203 18 H -0.212 1.212 19 N -0.178 5.178 20 N -0.207 5.207 21 C -0.008 4.008 22 N -0.155 5.155 23 C -0.089 4.089 24 C -0.128 4.128 25 C -0.101 4.101 26 C -0.180 4.180 27 C -0.166 4.166 28 C -0.146 4.146 29 C -0.069 4.069 30 H 0.127 0.873 31 H 0.137 0.863 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.118 0.882 39 H 0.200 0.800 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.110 0.890 45 H 0.085 0.915 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.110 0.890 50 H 0.104 0.896 51 H 0.120 0.880 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.380 -2.102 -0.003 23.474 hybrid contribution 1.688 0.553 1.259 2.177 sum -21.692 -1.549 1.256 21.783 Atomic orbital electron populations 1.24029 0.94406 1.03459 0.95836 1.21825 0.96169 0.94625 1.04351 1.20892 1.00635 0.94276 1.01697 1.21218 1.02004 0.96646 0.78370 1.46182 1.15359 1.39517 1.14059 1.25013 0.90119 1.01799 0.89360 1.20911 0.90083 0.96470 1.01228 1.19039 0.88422 0.90056 0.83739 0.97373 1.86588 1.81527 1.38323 1.31253 1.21986 1.02906 0.95544 1.41317 0.91152 1.25905 1.01105 0.95621 0.94958 1.70240 1.31686 1.10753 1.41055 0.85479 0.78683 0.79393 0.77830 1.18188 1.20340 1.21175 1.73844 1.13105 1.13381 1.17495 1.74266 1.01975 1.22615 1.21830 1.22956 0.92062 0.97657 0.88119 1.60616 1.14194 1.32206 1.08485 1.23381 0.99222 0.92887 0.93383 1.22424 1.00019 0.97541 0.92819 1.22243 0.98919 0.92410 0.96546 1.22868 0.96963 0.97515 1.00619 1.22860 0.94629 0.96294 1.02850 1.22668 0.96668 0.94529 1.00752 1.22844 1.01092 0.92295 0.90707 0.87264 0.86309 0.92941 0.89495 0.91560 0.87187 0.88047 0.89168 0.88179 0.79965 0.93074 0.95401 0.87360 0.87268 0.88980 0.91469 0.93179 0.88998 0.90889 0.88994 0.89584 0.88036 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 13.89 67.79 0.94 -1.57 16 2 C -0.17 -3.74 5.63 -16.48 -0.09 -3.83 16 3 C -0.12 -2.51 9.25 71.23 0.66 -1.85 16 4 C 0.14 3.68 5.94 85.63 0.51 4.19 16 5 N -0.46 -15.92 2.79 -518.89 -1.45 -17.36 16 6 C 0.21 8.66 7.09 137.64 0.98 9.63 16 7 C -0.05 -1.93 5.05 29.85 0.15 -1.78 16 8 C 0.25 12.47 2.81 29.85 0.08 12.55 16 9 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 10 O -0.57 -27.92 11.65 -148.98 -1.74 -29.66 16 11 C -0.58 -30.67 8.76 25.60 0.22 -30.44 16 12 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 13 C 0.03 1.46 5.40 84.65 0.46 1.91 16 14 N -0.90 -53.42 12.84 21.45 0.28 -53.15 16 15 Si 0.96 42.39 29.54 68.60 2.03 44.42 16 16 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 18 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 19 N -0.34 -16.02 12.18 -49.54 -0.60 -16.62 16 20 N -0.36 -15.63 10.48 -58.00 -0.61 -16.23 16 21 C 0.35 12.43 6.98 260.11 1.82 14.25 16 22 N -0.43 -11.37 5.23 -696.70 -3.65 -15.01 16 23 C 0.04 0.82 5.53 86.83 0.48 1.30 16 24 C -0.09 -1.38 6.24 31.64 0.20 -1.18 16 25 C -0.10 -1.84 0.94 -52.17 -0.05 -1.88 16 26 C -0.14 -3.05 7.31 30.78 0.23 -2.82 16 27 C -0.13 -1.86 7.96 31.26 0.25 -1.61 16 28 C -0.11 -1.42 7.39 30.77 0.23 -1.19 16 29 C 0.06 1.38 6.31 86.18 0.54 1.92 16 30 H 0.11 1.82 7.99 -2.91 -0.02 1.79 16 31 H 0.12 1.73 8.04 -2.91 -0.02 1.71 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.43 8.06 -2.39 -0.02 1.41 16 34 H 0.07 1.45 7.20 -2.38 -0.02 1.43 16 35 H 0.11 2.49 5.28 -2.39 -0.01 2.48 16 36 H 0.10 2.84 5.45 -2.38 -0.01 2.83 16 37 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 38 H 0.10 3.50 6.15 -2.39 -0.01 3.49 16 39 H 0.35 14.52 7.67 -74.06 -0.57 13.95 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.03 0.79 7.79 -2.39 -0.02 0.77 16 42 H 0.11 1.86 6.69 -2.39 -0.02 1.84 16 43 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 45 H 0.07 1.67 8.01 -2.38 -0.02 1.66 16 46 H 0.05 1.22 8.12 -2.39 -0.02 1.20 16 47 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 0.86 8.12 -2.38 -0.02 0.84 16 50 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 51 H 0.10 2.10 8.09 -2.39 -0.02 2.08 16 52 H 0.06 2.01 6.07 -2.39 -0.01 2.00 16 Total: -1.00 -73.61 408.32 2.21 -71.39 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: 0.36 Total: 34.63 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 7.60 Total: -2.40 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -6.03 Total: -118.38 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -1.74 Total: -29.66 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -73.61 2.21 -71.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342778948.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.659 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds