Wall clock time and date at job start Wed Apr 1 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50695 * 120.00500 * 2 1 4 4 C 1.50707 * 119.99734 * 180.02562 * 2 1 3 5 5 N 1.46506 * 109.46975 * 106.54967 * 4 2 1 6 6 C 1.36746 * 127.13411 * 81.11659 * 5 4 2 7 7 C 1.50697 * 126.34893 * 359.94519 * 6 5 4 8 8 C 1.52995 * 109.47287 * 96.49139 * 7 6 5 9 9 H 1.09003 * 109.47159 * 56.40228 * 8 7 6 10 10 O 1.42906 * 109.47080 * 296.40578 * 8 7 6 11 11 C 1.50699 * 109.47453 * 176.40596 * 8 7 6 12 12 H 1.08006 * 119.99581 * 0.02562 * 11 8 7 13 13 C 1.37880 * 120.00195 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99888 * 359.97438 * 13 11 8 15 15 Si 1.86798 * 119.99735 * 179.97438 * 13 11 8 16 16 H 1.48502 * 109.47220 * 90.00199 * 15 13 11 17 17 H 1.48508 * 109.46785 * 209.99985 * 15 13 11 18 18 H 1.48499 * 109.47277 * 329.99955 * 15 13 11 19 19 N 1.30295 * 107.30028 * 179.97438 * 6 5 4 20 20 N 1.28522 * 110.05500 * 359.73027 * 19 6 5 21 21 C 1.31218 * 109.86445 * 0.45041 * 20 19 6 22 22 N 1.38572 * 126.47573 * 179.82223 * 21 20 19 23 23 C 1.47907 * 111.00156 * 126.55901 * 22 21 20 24 24 C 1.53990 * 107.05954 * 145.84533 * 23 22 21 25 25 C 1.54600 * 105.13935 * 358.77741 * 24 23 22 26 26 H 1.08999 * 110.72661 * 96.40247 * 25 24 23 27 27 C 1.52995 * 110.72239 * 219.50850 * 25 24 23 28 28 C 1.53008 * 117.49777 * 244.89032 * 27 25 24 29 29 C 1.53003 * 117.49537 * 176.23726 * 27 25 24 30 30 C 1.48527 * 111.00434 * 243.95714 * 22 21 20 31 31 H 1.08006 * 120.00220 * 186.26572 * 1 2 3 32 32 H 1.08002 * 120.00169 * 6.26303 * 1 2 3 33 33 H 1.08997 * 109.47422 * 264.48173 * 3 2 1 34 34 H 1.09004 * 109.46673 * 24.47475 * 3 2 1 35 35 H 1.08992 * 109.47209 * 144.47297 * 3 2 1 36 36 H 1.08995 * 109.47046 * 346.55680 * 4 2 1 37 37 H 1.08997 * 109.46949 * 226.54715 * 4 2 1 38 38 H 1.08997 * 109.46973 * 216.49358 * 7 6 5 39 39 H 1.09004 * 109.46968 * 336.49231 * 7 6 5 40 40 H 0.96694 * 113.99812 * 304.69558 * 10 8 7 41 41 H 0.97000 * 119.99775 * 180.02562 * 14 13 11 42 42 H 1.09006 * 109.91036 * 26.49232 * 23 22 21 43 43 H 1.08994 * 110.08084 * 265.29552 * 23 22 21 44 44 H 1.08999 * 110.30809 * 239.86623 * 24 23 22 45 45 H 1.08997 * 110.31056 * 117.69089 * 24 23 22 46 46 H 1.09004 * 115.55485 * 30.56367 * 27 25 24 47 47 H 1.08995 * 117.49416 * 0.02562 * 28 27 25 48 48 H 1.08999 * 117.49498 * 145.01953 * 28 27 25 49 49 H 1.09004 * 117.49352 * 214.97920 * 29 27 25 50 50 H 1.08993 * 117.50019 * 359.96925 * 29 27 25 51 51 H 1.09001 * 110.66674 * 81.83947 * 30 22 21 52 52 H 1.08999 * 110.66493 * 318.71772 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0634 -1.3052 -0.0006 5 7 2.6483 -1.5308 -1.3247 6 6 3.8066 -0.9964 -1.8176 7 6 4.7331 -0.0528 -1.0950 8 6 5.8794 -0.8463 -0.4649 9 1 6.3913 -1.4206 -1.2371 10 8 5.3558 -1.7369 0.5226 11 6 6.8528 0.1049 0.1822 12 1 6.6716 1.1691 0.1478 13 6 7.9745 -0.3834 0.8182 14 7 8.1947 -1.6792 0.8605 15 14 9.1813 0.7959 1.6196 16 1 8.7849 1.0258 3.0321 17 1 10.5461 0.2119 1.5773 18 1 9.1725 2.0873 0.8865 19 7 3.9601 -1.4538 -3.0279 20 7 2.9883 -2.2392 -3.3288 21 6 2.1506 -2.3181 -2.3219 22 7 0.9841 -3.0648 -2.2773 23 6 0.9644 -3.9471 -1.0904 24 6 -0.4997 -4.0430 -0.6230 25 6 -1.2938 -3.1404 -1.5951 26 1 -1.7330 -3.7315 -2.3987 27 6 -2.3757 -2.3591 -0.8468 28 6 -3.8345 -2.6644 -1.1929 29 6 -3.1988 -1.3484 -1.6480 30 6 -0.2060 -2.1857 -2.1481 31 1 -0.5401 -0.9298 0.1021 32 1 -0.5400 0.9297 -0.1020 33 1 2.3308 1.5703 -1.0229 34 1 1.4352 2.0873 0.4258 35 1 2.9694 1.2014 0.5971 36 1 1.3795 -2.1196 0.2380 37 1 2.8572 -1.2668 0.7454 38 1 5.1381 0.6712 -1.8021 39 1 4.1817 0.4711 -0.3143 40 1 4.8254 -1.3011 1.2035 41 1 8.9837 -2.0227 1.3082 42 1 1.5796 -3.5185 -0.2991 43 1 1.3358 -4.9373 -1.3540 44 1 -0.5956 -3.6751 0.3985 45 1 -0.8515 -5.0724 -0.6899 46 1 -2.1454 -2.1120 0.1896 47 1 -4.0233 -3.4221 -1.9533 48 1 -4.5639 -2.6178 -0.3842 49 1 -3.5103 -0.4365 -1.1385 50 1 -2.9693 -1.2398 -2.7079 51 1 -0.4996 -1.7901 -3.1205 52 1 -0.0115 -1.3757 -1.4451 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342779934.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:20 Heat of formation + Delta-G solvation = 95.359604 kcal Electronic energy + Delta-G solvation = -32591.286274 eV Core-core repulsion = 28594.293259 eV Total energy + Delta-G solvation = -3996.993015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.73395 -39.82354 -37.27982 -36.91058 -35.97018 -33.32603 -32.44251 -32.19764 -30.74286 -29.28498 -27.95530 -27.72232 -26.85166 -25.34659 -23.49827 -22.68790 -22.08146 -21.76206 -20.73649 -20.51731 -20.04826 -18.84076 -17.41259 -17.04112 -16.27563 -16.11636 -16.00216 -15.55239 -15.02417 -14.74147 -14.64115 -14.39666 -14.22444 -13.84347 -13.61645 -13.50250 -13.40640 -12.96564 -12.89503 -12.69735 -12.21585 -12.20265 -12.05385 -11.99752 -11.87019 -11.85210 -11.42182 -11.32588 -11.13292 -11.00601 -10.91329 -10.80946 -10.76123 -10.53574 -10.26213 -10.16098 -9.95603 -9.81942 -9.42927 -9.33061 -8.83756 -8.65446 -8.60620 -8.09639 -6.06451 -4.26390 1.62486 2.11101 2.82054 3.23591 3.30297 3.32008 3.34268 3.38624 3.46476 4.20578 4.26379 4.33358 4.34320 4.36835 4.42283 4.59019 4.72655 4.78693 4.89425 4.98938 5.04132 5.07543 5.15651 5.21856 5.23140 5.29579 5.30448 5.36049 5.45219 5.47902 5.54862 5.55276 5.57993 5.63250 5.70507 5.75692 5.76745 5.82525 5.95232 6.01936 6.09223 6.18072 6.25362 6.28242 6.32539 6.42442 6.48169 6.64062 6.85818 7.46617 7.63607 7.76402 8.06369 8.73847 9.19754 9.27691 9.49624 10.97740 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018521 B = 0.003002 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.473519 B = 9326.197479 C = 9780.423386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C -0.126 4.126 4 C 0.126 3.874 5 N -0.487 5.487 6 C 0.230 3.770 7 C -0.075 4.075 8 C 0.238 3.762 9 H 0.066 0.934 10 O -0.560 6.560 11 C -0.573 4.573 12 H 0.059 0.941 13 C 0.081 3.919 14 N -0.855 5.855 15 Si 0.891 3.109 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.272 1.272 19 N -0.302 5.302 20 N -0.266 5.266 21 C 0.313 3.687 22 N -0.417 5.417 23 C 0.023 3.977 24 C -0.123 4.123 25 C -0.059 4.059 26 H 0.089 0.911 27 C -0.147 4.147 28 C -0.176 4.176 29 C -0.177 4.177 30 C 0.020 3.980 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.334 0.666 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.093 0.907 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.087 0.913 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.473 0.749 1.533 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.183 4.183 4 C 0.004 3.996 5 N -0.184 5.184 6 C -0.038 4.038 7 C -0.115 4.115 8 C 0.179 3.821 9 H 0.083 0.917 10 O -0.362 6.362 11 C -0.611 4.611 12 H 0.077 0.923 13 C -0.126 4.126 14 N -0.490 5.490 15 Si 0.718 3.282 16 H -0.206 1.206 17 H -0.211 1.211 18 H -0.197 1.197 19 N -0.141 5.141 20 N -0.107 5.107 21 C -0.042 4.042 22 N -0.141 5.141 23 C -0.104 4.104 24 C -0.161 4.161 25 C -0.079 4.079 26 H 0.107 0.893 27 C -0.166 4.166 28 C -0.213 4.213 29 C -0.214 4.214 30 C -0.107 4.107 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.177 0.823 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.111 0.889 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.124 0.876 47 H 0.113 0.887 48 H 0.112 0.888 49 H 0.113 0.887 50 H 0.114 0.886 51 H 0.105 0.895 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -23.410 -0.432 -0.687 23.424 hybrid contribution -0.050 1.584 2.726 3.153 sum -23.460 1.152 2.039 23.577 Atomic orbital electron populations 1.23957 0.95004 1.02711 0.99971 1.21978 0.95593 0.95784 1.00863 1.21064 1.00680 0.93579 1.02942 1.21154 0.99172 0.95906 0.83401 1.47184 1.20374 1.36978 1.13848 1.25241 0.87227 0.98969 0.92327 1.21462 0.95465 0.95744 0.98872 1.19441 0.86893 0.88283 0.87444 0.91660 1.86717 1.71149 1.38293 1.40033 1.21540 1.07891 0.93176 1.38517 0.92316 1.25034 0.97280 0.94884 0.95367 1.70081 1.26621 1.11706 1.40619 0.86648 0.80624 0.81271 0.79683 1.20589 1.21066 1.19701 1.74192 1.17432 1.10859 1.11605 1.74399 0.99871 1.14992 1.21442 1.23040 0.96206 0.97443 0.87502 1.61834 0.97669 1.15100 1.39462 1.23241 0.97449 0.98798 0.90923 1.22500 0.93412 1.01234 0.98992 1.21652 0.93574 0.95321 0.97306 0.89306 1.22299 0.91921 1.02842 0.99531 1.23017 0.95143 0.99561 1.03581 1.22960 1.04064 0.93600 1.00819 1.23975 0.88282 0.95643 1.02769 0.87469 0.87481 0.91138 0.91399 0.90133 0.88172 0.87268 0.88659 0.90255 0.82270 0.92879 0.92176 0.88890 0.90875 0.90027 0.87625 0.88669 0.88831 0.88737 0.88617 0.89500 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 11.62 29.02 0.34 -1.20 16 2 C -0.14 -1.51 5.34 -101.06 -0.54 -2.05 16 3 C -0.13 -1.36 8.66 36.00 0.31 -1.05 16 4 C 0.13 1.59 4.63 -5.19 -0.02 1.57 16 5 N -0.49 -8.03 2.71 -115.36 -0.31 -8.34 16 6 C 0.23 4.54 7.06 -154.01 -1.09 3.46 16 7 C -0.08 -1.47 5.14 -27.89 -0.14 -1.61 16 8 C 0.24 5.80 2.83 -27.89 -0.08 5.72 16 9 H 0.07 1.88 8.14 -51.93 -0.42 1.45 16 10 O -0.56 -13.50 12.21 -35.23 -0.43 -13.93 16 11 C -0.57 -14.95 8.79 -34.44 -0.30 -15.25 16 12 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 13 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 14 N -0.86 -24.90 12.84 55.43 0.71 -24.19 16 15 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 19 N -0.30 -6.78 12.18 32.99 0.40 -6.38 16 20 N -0.27 -5.73 12.23 30.31 0.37 -5.36 16 21 C 0.31 5.54 6.73 -318.89 -2.15 3.40 16 22 N -0.42 -5.86 5.35 -170.56 -0.91 -6.78 16 23 C 0.02 0.27 5.88 -2.75 -0.02 0.25 16 24 C -0.12 -0.98 6.49 -25.37 -0.16 -1.15 16 25 C -0.06 -0.47 3.21 -88.76 -0.29 -0.76 16 26 H 0.09 0.73 7.97 -51.93 -0.41 0.32 16 27 C -0.15 -0.94 4.16 -90.62 -0.38 -1.32 16 28 C -0.18 -1.02 10.19 -26.69 -0.27 -1.29 16 29 C -0.18 -1.10 10.02 -26.69 -0.27 -1.37 16 30 C 0.02 0.22 5.48 -1.90 -0.01 0.21 16 31 H 0.11 0.81 4.53 -52.48 -0.24 0.57 16 32 H 0.11 0.79 8.03 -52.49 -0.42 0.37 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.60 8.01 -51.93 -0.42 0.18 16 35 H 0.08 0.92 6.30 -51.93 -0.33 0.59 16 36 H 0.10 1.09 4.50 -51.93 -0.23 0.86 16 37 H 0.11 1.43 6.54 -51.93 -0.34 1.09 16 38 H 0.10 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.08 1.32 4.23 -51.93 -0.22 1.10 16 40 H 0.33 6.79 7.71 45.56 0.35 7.14 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.06 0.74 4.73 -51.93 -0.25 0.49 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.07 0.49 7.63 -51.93 -0.40 0.10 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.11 0.63 6.80 -51.93 -0.35 0.27 16 47 H 0.09 0.54 8.08 -51.93 -0.42 0.12 16 48 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.08 0.83 2.12 -51.93 -0.11 0.72 16 LS Contribution 396.52 15.07 5.98 5.98 Total: -1.00 -33.23 396.52 -11.51 -44.73 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.13 Total: 9.04 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -5.16 Total: -10.33 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.26 Total: -51.04 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.43 Total: -13.93 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.23 -11.51 -44.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342779934.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.094 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds