Wall clock time and date at job start Wed Apr 1 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 119.99905 * 2 1 4 4 C 1.50699 * 119.99915 * 180.02562 * 2 1 3 5 5 N 1.46501 * 109.47294 * 98.57160 * 4 2 1 6 6 C 1.36735 * 127.13730 * 81.61743 * 5 4 2 7 7 C 1.50697 * 126.34762 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.46943 * 258.74012 * 7 6 5 9 9 H 1.09000 * 109.46779 * 54.24581 * 8 7 6 10 10 O 1.42905 * 109.47079 * 294.24895 * 8 7 6 11 11 C 1.50696 * 109.47123 * 174.24883 * 8 7 6 12 12 H 1.08001 * 120.00343 * 359.97438 * 11 8 7 13 13 C 1.37872 * 120.00133 * 180.02562 * 11 8 7 14 14 N 1.31520 * 120.00260 * 359.97438 * 13 11 8 15 15 Si 1.86806 * 120.00155 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47158 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47111 * 119.99784 * 15 13 11 18 18 H 1.48503 * 109.47232 * 239.99666 * 15 13 11 19 19 N 1.30297 * 107.30330 * 179.97438 * 6 5 4 20 20 N 1.28529 * 110.05638 * 0.02562 * 19 6 5 21 21 C 1.31225 * 109.85940 * 359.97438 * 20 19 6 22 22 N 1.38577 * 126.47299 * 179.97438 * 21 20 19 23 23 C 1.47905 * 110.99873 * 240.68802 * 22 21 20 24 24 C 1.53994 * 107.05803 * 214.15375 * 23 22 21 25 25 C 1.54598 * 105.13921 * 1.23172 * 24 23 22 26 26 H 1.09001 * 110.72001 * 263.41423 * 25 24 23 27 27 C 1.52999 * 110.72523 * 140.31365 * 25 24 23 28 28 C 1.52995 * 117.50161 * 130.19805 * 27 25 24 29 29 C 1.52996 * 117.50011 * 61.53562 * 27 25 24 30 30 C 1.48534 * 111.00065 * 123.29493 * 22 21 20 31 31 H 1.07994 * 119.99969 * 6.60195 * 1 2 3 32 32 H 1.08007 * 119.99829 * 186.59528 * 1 2 3 33 33 H 1.09001 * 109.46858 * 182.10141 * 3 2 1 34 34 H 1.08991 * 109.47204 * 302.10497 * 3 2 1 35 35 H 1.08999 * 109.46788 * 62.10627 * 3 2 1 36 36 H 1.08997 * 109.46984 * 338.56393 * 4 2 1 37 37 H 1.09005 * 109.46953 * 218.57020 * 4 2 1 38 38 H 1.09000 * 109.47288 * 18.73920 * 7 6 5 39 39 H 1.09003 * 109.47248 * 138.74246 * 7 6 5 40 40 H 0.96699 * 113.99827 * 300.00094 * 10 8 7 41 41 H 0.96990 * 120.00220 * 180.02562 * 14 13 11 42 42 H 1.08996 * 109.91968 * 333.50932 * 23 22 21 43 43 H 1.09002 * 109.91308 * 94.80696 * 23 22 21 44 44 H 1.09004 * 110.30573 * 120.14036 * 24 23 22 45 45 H 1.08996 * 110.31101 * 242.30654 * 24 23 22 46 46 H 1.09001 * 115.54813 * 275.86733 * 27 25 24 47 47 H 1.09002 * 117.50059 * 359.97438 * 28 27 25 48 48 H 1.08997 * 117.50300 * 145.01516 * 28 27 25 49 49 H 1.08999 * 117.50012 * 214.98067 * 29 27 25 50 50 H 1.09004 * 117.50109 * 359.97438 * 29 27 25 51 51 H 1.08996 * 110.66418 * 278.15517 * 30 22 21 52 52 H 1.09003 * 110.66429 * 41.28410 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 7 2.4860 -1.6245 -1.3665 6 6 3.5794 -1.1377 -2.0275 7 6 4.5894 -0.1601 -1.4843 8 6 4.2956 1.2363 -2.0364 9 1 3.2602 1.5011 -1.8224 10 8 4.5069 1.2439 -3.4497 11 6 5.2150 2.2374 -1.3857 12 1 5.9364 1.9106 -0.6514 13 6 5.1345 3.5708 -1.7269 14 7 4.2557 3.9691 -2.6206 15 14 6.2737 4.8120 -0.9197 16 1 7.1625 4.1145 0.0440 17 1 7.0972 5.4781 -1.9605 18 1 5.4666 5.8301 -0.2005 19 7 3.5863 -1.6758 -3.2142 20 7 2.5789 -2.4630 -3.3470 21 6 1.8699 -2.4698 -2.2429 22 7 0.7134 -3.1972 -2.0110 23 6 -0.4262 -2.3015 -1.7168 24 6 -1.3208 -3.0290 -0.6961 25 6 -0.6023 -4.3679 -0.4115 26 1 -1.0191 -5.1671 -1.0243 27 6 -0.6908 -4.7248 1.0737 28 6 -1.1613 -6.1352 1.4345 29 6 -2.0848 -4.9368 1.6674 30 6 0.8627 -4.0680 -0.8170 31 1 -0.5400 0.9291 -0.1075 32 1 -0.5400 -0.9292 0.1074 33 1 3.1346 1.1063 -0.0377 34 1 1.7722 1.8929 -0.8704 35 1 1.8288 1.8601 0.9083 36 1 1.4167 -2.0982 0.3746 37 1 2.9410 -1.2183 0.6402 38 1 4.5278 -0.1409 -0.3962 39 1 5.5909 -0.4668 -1.7862 40 1 5.4090 1.0166 -3.7138 41 1 4.1993 4.9071 -2.8609 42 1 -0.0630 -1.3658 -1.2918 43 1 -0.9887 -2.1043 -2.6295 44 1 -1.4047 -2.4426 0.2190 45 1 -2.3078 -3.2120 -1.1209 46 1 0.0642 -4.2672 1.7129 47 1 -1.4083 -6.8087 0.6138 48 1 -0.7161 -6.6054 2.3113 49 1 -2.2468 -4.6191 2.6974 50 1 -2.9390 -4.8216 1.0001 51 1 1.3865 -4.9883 -1.0751 52 1 1.3825 -3.5394 -0.0179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342779939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:30 Heat of formation + Delta-G solvation = 106.610444 kcal Electronic energy + Delta-G solvation = -32565.495072 eV Core-core repulsion = 28568.989930 eV Total energy + Delta-G solvation = -3996.505142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -42.73158 -39.83773 -37.39096 -36.76731 -35.77354 -33.34979 -32.37392 -32.11034 -30.62953 -29.55896 -28.02673 -27.15364 -26.76181 -25.37178 -23.20033 -22.93057 -22.14419 -21.77107 -20.90990 -20.23513 -19.92454 -18.79193 -17.27816 -16.97303 -16.49786 -16.27272 -15.70201 -15.48112 -15.17813 -14.66075 -14.57774 -14.33711 -14.23299 -14.00797 -13.58098 -13.15624 -13.02661 -12.93132 -12.73617 -12.49570 -12.43231 -12.14879 -11.92557 -11.89399 -11.57084 -11.52080 -11.32908 -11.13940 -11.10416 -11.02774 -10.88260 -10.82563 -10.72499 -10.60345 -10.26122 -10.16460 -9.90638 -9.76085 -9.29885 -9.11675 -8.75834 -8.61488 -8.53356 -8.00532 -6.06990 -4.26861 1.74518 2.14177 2.84539 3.21668 3.31076 3.32047 3.33862 3.40785 3.45810 4.13280 4.26320 4.31746 4.32449 4.40994 4.55850 4.60434 4.77548 4.78736 4.91452 4.99211 5.02219 5.06321 5.15372 5.20104 5.21352 5.27432 5.30888 5.46239 5.52782 5.54995 5.59850 5.67297 5.73784 5.75275 5.77291 5.93113 5.93741 6.00616 6.05376 6.14964 6.23690 6.27458 6.32027 6.42880 6.47212 6.57579 6.64550 6.83350 6.91147 7.45825 7.62533 7.77006 8.07244 8.76020 9.30915 9.40142 9.55847 10.96520 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018348 B = 0.003051 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.725119 B = 9174.212464 C = 9863.614513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 C -0.134 4.134 4 C 0.128 3.872 5 N -0.496 5.496 6 C 0.222 3.778 7 C -0.070 4.070 8 C 0.228 3.772 9 H 0.071 0.929 10 O -0.555 6.555 11 C -0.574 4.574 12 H 0.057 0.943 13 C 0.083 3.917 14 N -0.854 5.854 15 Si 0.886 3.114 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.284 1.284 19 N -0.283 5.283 20 N -0.265 5.265 21 C 0.310 3.690 22 N -0.415 5.415 23 C -0.003 4.003 24 C -0.125 4.125 25 C -0.058 4.058 26 H 0.090 0.910 27 C -0.148 4.148 28 C -0.178 4.178 29 C -0.176 4.176 30 C 0.035 3.965 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.347 0.653 41 H 0.260 0.740 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.095 0.905 51 H 0.093 0.907 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.374 -15.142 12.139 23.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.137 4.137 3 C -0.190 4.190 4 C 0.005 3.995 5 N -0.194 5.194 6 C -0.045 4.045 7 C -0.110 4.110 8 C 0.170 3.830 9 H 0.089 0.911 10 O -0.357 6.357 11 C -0.612 4.612 12 H 0.075 0.925 13 C -0.124 4.124 14 N -0.489 5.489 15 Si 0.714 3.286 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.210 1.210 19 N -0.122 5.122 20 N -0.106 5.106 21 C -0.045 4.045 22 N -0.139 5.139 23 C -0.129 4.129 24 C -0.163 4.163 25 C -0.077 4.077 26 H 0.109 0.891 27 C -0.166 4.166 28 C -0.215 4.215 29 C -0.213 4.213 30 C -0.092 4.092 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.191 0.809 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.122 0.878 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.112 0.888 50 H 0.114 0.886 51 H 0.111 0.889 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.747 -15.490 10.104 22.462 hybrid contribution 0.843 1.386 2.473 2.958 sum -11.904 -14.103 12.577 22.334 Atomic orbital electron populations 1.24072 0.95456 1.02755 1.00774 1.22085 0.95595 0.95933 1.00077 1.21301 1.02212 0.92945 1.02503 1.21115 1.00942 0.96074 0.81336 1.47384 1.22624 1.35664 1.13735 1.25287 0.90328 0.98639 0.90268 1.21324 0.94381 0.95535 0.99757 1.19739 0.98416 0.85250 0.79636 0.91112 1.86622 1.32325 1.92507 1.24211 1.21614 1.21273 0.92618 1.25697 0.92469 1.24999 0.94849 0.98354 0.94176 1.70089 1.33435 1.15811 1.29565 0.86659 0.81022 0.81509 0.79449 1.19680 1.20831 1.20967 1.74235 1.15017 1.08825 1.14115 1.74449 1.02182 1.16345 1.17626 1.23096 0.95801 0.96394 0.89173 1.61855 0.98970 1.16022 1.37037 1.23895 0.91671 0.96815 1.00566 1.22516 0.99354 0.95658 0.98773 1.21651 0.94423 0.97964 0.93653 0.89126 1.22255 0.98463 1.00222 0.95682 1.23037 1.03954 0.91000 1.03468 1.22946 0.93640 1.02813 1.01914 1.23602 0.97363 0.97720 0.90508 0.87281 0.87269 0.89071 0.90149 0.91462 0.88350 0.88071 0.90725 0.89425 0.80943 0.92963 0.89413 0.89294 0.90557 0.90226 0.87807 0.88601 0.88825 0.88784 0.88619 0.88882 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 11.64 29.01 0.34 -1.87 16 2 C -0.14 -1.83 5.39 -101.07 -0.54 -2.37 16 3 C -0.13 -2.15 8.53 36.01 0.31 -1.84 16 4 C 0.13 1.64 4.84 -5.19 -0.03 1.61 16 5 N -0.50 -8.27 2.70 -115.37 -0.31 -8.58 16 6 C 0.22 4.41 7.11 -154.02 -1.09 3.32 16 7 C -0.07 -1.36 4.67 -27.88 -0.13 -1.49 16 8 C 0.23 5.41 1.86 -27.88 -0.05 5.36 16 9 H 0.07 1.79 4.62 -51.93 -0.24 1.55 16 10 O -0.55 -14.53 12.50 -35.23 -0.44 -14.97 16 11 C -0.57 -14.48 8.52 -34.44 -0.29 -14.78 16 12 H 0.06 1.40 7.74 -52.49 -0.41 0.99 16 13 C 0.08 2.19 5.40 -17.82 -0.10 2.10 16 14 N -0.85 -24.18 12.84 55.43 0.71 -23.47 16 15 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 16 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 19 N -0.28 -6.36 12.18 32.99 0.40 -5.96 16 20 N -0.26 -5.72 12.23 30.32 0.37 -5.35 16 21 C 0.31 5.50 6.70 -318.87 -2.14 3.36 16 22 N -0.42 -5.83 5.35 -170.55 -0.91 -6.75 16 23 C 0.00 -0.04 5.85 -2.75 -0.02 -0.05 16 24 C -0.13 -1.01 5.96 -25.37 -0.15 -1.17 16 25 C -0.06 -0.46 3.23 -88.76 -0.29 -0.75 16 26 H 0.09 0.73 7.96 -51.93 -0.41 0.32 16 27 C -0.15 -0.98 5.10 -90.63 -0.46 -1.44 16 28 C -0.18 -1.07 10.19 -26.70 -0.27 -1.34 16 29 C -0.18 -1.02 9.98 -26.70 -0.27 -1.29 16 30 C 0.04 0.37 5.59 -1.90 -0.01 0.36 16 31 H 0.11 1.21 8.05 -52.49 -0.42 0.79 16 32 H 0.11 1.03 3.87 -52.48 -0.20 0.83 16 33 H 0.09 1.62 3.94 -51.93 -0.20 1.41 16 34 H 0.08 1.54 7.08 -51.93 -0.37 1.17 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.10 1.02 4.51 -51.93 -0.23 0.79 16 37 H 0.10 1.18 7.44 -51.93 -0.39 0.79 16 38 H 0.07 1.29 6.04 -51.93 -0.31 0.98 16 39 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 40 H 0.35 8.24 9.04 45.56 0.41 8.66 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.09 1.11 2.02 -51.93 -0.10 1.00 16 43 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.08 0.55 6.08 -51.93 -0.32 0.23 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.10 0.68 7.95 -51.93 -0.41 0.27 16 47 H 0.10 0.56 8.08 -51.93 -0.42 0.14 16 48 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 52 H 0.06 0.58 4.52 -51.93 -0.23 0.35 16 LS Contribution 391.61 15.07 5.90 5.90 Total: -1.00 -32.37 391.61 -11.28 -43.64 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -6.78 Total: 12.66 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -5.19 Total: -12.27 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.26 Total: -50.11 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.44 Total: -14.97 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.37 -11.28 -43.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342779939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.255 kcal (2) G-P(sol) polarization free energy of solvation -32.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds