Wall clock time and date at job start Wed Apr 1 2020 05:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00155 * 2 1 4 4 C 1.50705 * 120.00002 * 179.97438 * 2 1 3 5 5 N 1.46502 * 109.47354 * 264.69433 * 4 2 1 6 6 C 1.36733 * 127.13418 * 91.26575 * 5 4 2 7 7 C 1.50702 * 126.34988 * 359.96975 * 6 5 4 8 8 H 1.09005 * 109.46968 * 14.99291 * 7 6 5 9 9 O 1.42901 * 109.47233 * 134.99482 * 7 6 5 10 10 C 1.52997 * 109.46958 * 254.99809 * 7 6 5 11 11 C 1.52998 * 117.49722 * 248.61834 * 10 7 6 12 12 C 1.53001 * 60.00129 * 252.51248 * 11 10 7 13 13 N 1.30296 * 107.30407 * 179.83395 * 6 5 4 14 14 N 1.28528 * 110.05370 * 0.44575 * 13 6 5 15 15 C 1.31226 * 109.85740 * 359.71838 * 14 13 6 16 16 N 1.38579 * 126.47059 * 179.97438 * 15 14 13 17 17 C 1.46847 * 111.00237 * 106.86519 * 16 15 14 18 18 C 1.53039 * 109.52157 * 174.16152 * 17 16 15 19 19 C 1.53115 * 109.28108 * 59.17855 * 18 17 16 20 20 C 1.50701 * 109.52155 * 182.44124 * 19 18 17 21 21 H 1.07998 * 119.99758 * 119.68519 * 20 19 18 22 22 C 1.37877 * 120.00022 * 299.68112 * 20 19 18 23 23 N 1.31525 * 119.99799 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00327 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47360 * 59.99658 * 24 22 20 26 26 H 1.48493 * 109.47670 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47271 * 299.99952 * 24 22 20 28 28 C 1.53123 * 109.15973 * 302.34408 * 19 18 17 29 29 C 1.46849 * 111.00058 * 342.65314 * 16 15 14 30 30 H 1.07998 * 119.99906 * 184.27018 * 1 2 3 31 31 H 1.07997 * 119.99891 * 4.26551 * 1 2 3 32 32 H 1.08994 * 109.47566 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47271 * 300.00336 * 3 2 1 34 34 H 1.08999 * 109.47397 * 59.99854 * 3 2 1 35 35 H 1.09001 * 109.47016 * 24.70088 * 4 2 1 36 36 H 1.09002 * 109.46781 * 144.69314 * 4 2 1 37 37 H 0.96700 * 113.99709 * 60.00568 * 9 7 6 38 38 H 1.08992 * 115.55378 * 34.32941 * 10 7 6 39 39 H 1.09008 * 117.50211 * 0.02562 * 11 10 7 40 40 H 1.08996 * 117.50171 * 145.01950 * 11 10 7 41 41 H 1.09001 * 117.49612 * 252.51099 * 12 11 10 42 42 H 1.08993 * 117.51604 * 107.48338 * 12 11 10 43 43 H 1.09007 * 109.45999 * 294.17435 * 17 16 15 44 44 H 1.08997 * 109.46551 * 54.14200 * 17 16 15 45 45 H 1.09000 * 109.49827 * 299.23456 * 18 17 16 46 46 H 1.09003 * 109.49952 * 179.11818 * 18 17 16 47 47 H 1.08999 * 109.52659 * 62.24838 * 19 18 17 48 48 H 0.96996 * 119.99257 * 179.97438 * 23 22 20 49 49 H 1.09000 * 109.50106 * 297.71489 * 28 19 18 50 50 H 1.08998 * 109.50503 * 177.60064 * 28 19 18 51 51 H 1.09011 * 109.45982 * 305.85640 * 29 16 15 52 52 H 1.08998 * 109.46281 * 65.82404 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.4183 -1.6636 1.3760 6 6 1.6892 -2.4282 2.2440 7 6 0.3537 -3.0685 1.9653 8 1 0.1648 -3.0623 0.8918 9 8 0.3635 -4.4164 2.4396 10 6 -0.7474 -2.2838 2.6814 11 6 -1.4555 -2.9685 3.8521 12 6 -2.1861 -2.7792 2.5212 13 7 2.3644 -2.5029 3.3559 14 7 3.4577 -1.8350 3.2533 15 6 3.5421 -1.2988 2.0586 16 7 4.5768 -0.5106 1.5807 17 6 5.3971 -1.2492 0.6121 18 6 6.4364 -0.3079 -0.0009 19 6 7.3188 0.2645 1.1119 20 6 8.3057 1.2383 0.5213 21 1 8.3038 2.2698 0.8412 22 6 9.2111 0.8123 -0.4272 23 7 9.2137 -0.4441 -0.8163 24 14 10.4349 2.0190 -1.1588 25 1 11.2850 2.5788 -0.0774 26 1 11.2916 1.3170 -2.1478 27 1 9.7015 3.1208 -1.8322 28 6 6.4351 0.9871 2.1324 29 6 5.3958 0.0083 2.6836 30 1 -0.5400 -0.9327 0.0696 31 1 -0.5400 0.9327 -0.0696 32 1 3.1351 1.1059 0.0005 33 1 1.8002 1.8767 -0.8900 34 1 1.8002 1.8767 0.8899 35 1 1.4366 -2.0868 -0.4285 36 1 2.9715 -1.2007 -0.5934 37 1 0.5264 -4.4981 3.3893 38 1 -0.5903 -1.2073 2.7479 39 1 -1.1367 -3.9779 4.1125 40 1 -1.7642 -2.3425 4.6892 41 1 -2.9755 -2.0285 2.4828 42 1 -2.3482 -3.6638 1.9054 43 1 5.9046 -2.0708 1.1179 44 1 4.7581 -1.6475 -0.1760 45 1 5.9294 0.5063 -0.5185 46 1 7.0552 -0.8603 -0.7081 47 1 7.8557 -0.5462 1.6044 48 1 9.8504 -0.7436 -1.4839 49 1 5.9281 1.8218 1.6483 50 1 7.0528 1.3602 2.9492 51 1 4.7557 0.5235 3.4000 52 1 5.9032 -0.8191 3.1796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343054938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:34 Heat of formation + Delta-G solvation = 76.919153 kcal Electronic energy + Delta-G solvation = -32076.872916 eV Core-core repulsion = 28079.080263 eV Total energy + Delta-G solvation = -3997.792653 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.92735 -39.04976 -38.31755 -36.97967 -35.36935 -34.14631 -33.44400 -31.66153 -30.18329 -29.88856 -27.60769 -27.33924 -26.71406 -25.66977 -22.85152 -22.75910 -22.40274 -21.63197 -20.98418 -20.45638 -19.01533 -18.73820 -17.65107 -17.00907 -16.52636 -16.31366 -16.11695 -16.05426 -15.05151 -14.86650 -14.57171 -14.39036 -14.24200 -14.05811 -13.57759 -13.26284 -13.16565 -12.90422 -12.67346 -12.49912 -12.36727 -11.95063 -11.90347 -11.81602 -11.67679 -11.58301 -11.46225 -11.11652 -10.95768 -10.92394 -10.69356 -10.61012 -10.53457 -10.36633 -10.30006 -10.17875 -10.06256 -9.69603 -9.43811 -9.29607 -9.07311 -8.85055 -8.37767 -7.99576 -6.04713 -4.10080 1.59245 1.84620 2.52766 2.94562 3.28775 3.33957 3.36525 3.40746 3.89376 4.04260 4.11003 4.36547 4.39808 4.40857 4.46610 4.53414 4.70341 4.88789 4.98161 5.05722 5.08712 5.25312 5.26513 5.34663 5.44073 5.50494 5.56940 5.66121 5.70416 5.71856 5.78255 5.82490 5.87950 5.92800 5.98079 5.99883 6.10538 6.19603 6.27330 6.29124 6.50147 6.55319 6.62764 6.71192 6.87672 6.99896 7.23023 7.25953 7.28818 7.55196 7.67521 7.91553 8.01791 8.38283 8.88879 8.93289 9.54962 11.01775 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.020103 B = 0.002737 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.488138 B =10226.580992 C =10751.574469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.135 4.135 3 C -0.122 4.122 4 C 0.140 3.860 5 N -0.464 5.464 6 C 0.130 3.870 7 C 0.238 3.762 8 H 0.112 0.888 9 O -0.544 6.544 10 C -0.185 4.185 11 C -0.167 4.167 12 C -0.167 4.167 13 N -0.274 5.274 14 N -0.326 5.326 15 C 0.380 3.620 16 N -0.452 5.452 17 C 0.061 3.939 18 C -0.102 4.102 19 C 0.047 3.953 20 C -0.511 4.511 21 H 0.055 0.945 22 C 0.061 3.939 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.278 1.278 28 C -0.107 4.107 29 C 0.077 3.923 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.388 0.612 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.100 0.900 47 H 0.025 0.975 48 H 0.261 0.739 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.019 -3.076 1.688 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.136 4.136 3 C -0.179 4.179 4 C 0.018 3.982 5 N -0.159 5.159 6 C -0.138 4.138 7 C 0.176 3.824 8 H 0.130 0.870 9 O -0.350 6.350 10 C -0.204 4.204 11 C -0.204 4.204 12 C -0.204 4.204 13 N -0.115 5.115 14 N -0.171 5.171 15 C 0.024 3.976 16 N -0.177 5.177 17 C -0.065 4.065 18 C -0.141 4.141 19 C 0.028 3.972 20 C -0.549 4.549 21 H 0.074 0.926 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.719 3.281 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.203 1.203 28 C -0.145 4.145 29 C -0.049 4.049 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.238 0.762 38 H 0.129 0.871 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.118 0.882 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.119 0.881 47 H 0.043 0.957 48 H 0.071 0.929 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.816 -3.325 2.098 22.168 hybrid contribution 0.806 0.669 -0.906 1.385 sum -21.010 -2.656 1.192 21.211 Atomic orbital electron populations 1.23812 0.95047 1.02371 1.00030 1.21909 0.95364 0.95618 1.00723 1.20885 1.01949 0.93412 1.01621 1.21040 1.01922 0.95313 0.79921 1.46168 1.15969 1.40376 1.13427 1.25260 0.99185 1.00859 0.88475 1.19356 0.83919 0.80690 0.98465 0.87026 1.86553 1.93933 1.23934 1.30568 1.22914 0.93271 1.00263 1.03975 1.22933 1.03210 1.02281 0.91995 1.22962 0.93561 1.03301 1.00544 1.73798 1.01569 1.16955 1.19168 1.74688 1.13766 1.12534 1.16077 1.22961 0.89768 0.95718 0.89127 1.58900 1.10352 1.31502 1.16967 1.22519 0.94698 0.96536 0.92773 1.21746 0.94257 0.97400 1.00652 1.18709 0.92034 0.95200 0.91234 1.21124 1.15704 0.95770 1.22277 0.92640 1.24966 0.97266 0.95090 0.96631 1.69846 1.36815 1.14813 1.31671 0.86677 0.81264 0.81224 0.78943 1.20310 1.21378 1.20318 1.21758 0.95657 0.97430 0.99662 1.22120 0.94390 0.98395 0.90039 0.88313 0.87707 0.89833 0.91514 0.91743 0.88656 0.87277 0.76194 0.87102 0.88006 0.88572 0.88637 0.88215 0.94100 0.92642 0.93406 0.88148 0.95656 0.92935 0.92302 0.92146 0.91468 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 13.92 29.01 0.40 -1.05 16 2 C -0.14 -1.39 5.64 -101.07 -0.57 -1.95 16 3 C -0.12 -1.37 10.05 36.00 0.36 -1.01 16 4 C 0.14 1.55 6.00 -5.19 -0.03 1.52 16 5 N -0.46 -6.53 2.79 -115.36 -0.32 -6.85 16 6 C 0.13 1.81 6.91 -154.02 -1.06 0.75 16 7 C 0.24 2.44 3.74 -27.88 -0.10 2.34 16 8 H 0.11 0.99 6.89 -51.93 -0.36 0.63 16 9 O -0.54 -5.83 12.48 -35.23 -0.44 -6.27 16 10 C -0.18 -1.62 5.69 -90.62 -0.52 -2.14 16 11 C -0.17 -1.29 9.73 -26.73 -0.26 -1.55 16 12 C -0.17 -1.15 10.19 -26.73 -0.27 -1.42 16 13 N -0.27 -4.65 12.10 32.99 0.40 -4.25 16 14 N -0.33 -6.14 11.44 30.31 0.35 -5.80 16 15 C 0.38 6.52 6.90 -318.88 -2.20 4.32 16 16 N -0.45 -7.89 4.38 -174.54 -0.76 -8.65 16 17 C 0.06 1.12 5.29 -3.83 -0.02 1.10 16 18 C -0.10 -2.20 5.12 -26.65 -0.14 -2.34 16 19 C 0.05 1.09 2.16 -91.65 -0.20 0.90 16 20 C -0.51 -13.32 8.56 -34.44 -0.29 -13.62 16 21 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 22 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 23 N -0.89 -24.42 11.37 55.43 0.63 -23.79 16 24 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 C -0.11 -2.12 5.32 -26.65 -0.14 -2.27 16 29 C 0.08 1.41 4.87 -3.83 -0.02 1.40 16 30 H 0.10 0.70 7.97 -52.49 -0.42 0.28 16 31 H 0.10 0.78 8.05 -52.49 -0.42 0.36 16 32 H 0.08 1.13 7.71 -51.93 -0.40 0.73 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.82 6.92 -51.93 -0.36 0.46 16 36 H 0.11 1.27 6.18 -51.93 -0.32 0.95 16 37 H 0.39 3.64 7.49 45.56 0.34 3.98 16 38 H 0.11 1.10 8.11 -51.93 -0.42 0.67 16 39 H 0.10 0.74 6.38 -51.92 -0.33 0.41 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.91 6.19 -51.93 -0.32 0.59 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.10 2.44 6.17 -51.93 -0.32 2.12 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 50 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.07 1.18 8.10 -51.92 -0.42 0.76 16 52 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 412.58 15.07 6.22 6.22 Total: -1.00 -29.47 412.58 -12.05 -41.52 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -7.94 Total: 5.75 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -5.16 Total: -13.49 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.29 Total: -49.35 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.44 Total: -6.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -29.47 -12.05 -41.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343054938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.439 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds