Wall clock time and date at job start Wed Apr 1 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99782 * 2 1 4 4 C 1.50701 * 120.00309 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.46886 * 95.32119 * 4 2 1 6 6 C 1.36735 * 127.13650 * 95.21943 * 5 4 2 7 7 C 1.50700 * 126.34747 * 359.93939 * 6 5 4 8 8 H 1.09003 * 109.47269 * 345.62435 * 7 6 5 9 9 O 1.42904 * 109.47101 * 225.61886 * 7 6 5 10 10 C 1.53007 * 109.46815 * 105.62324 * 7 6 5 11 11 C 1.53007 * 117.49463 * 252.62304 * 10 7 6 12 12 C 1.53000 * 59.99941 * 252.51351 * 11 10 7 13 13 N 1.30296 * 107.30315 * 179.97438 * 6 5 4 14 14 N 1.28523 * 110.05301 * 359.72784 * 13 6 5 15 15 C 1.31221 * 109.86316 * 0.45337 * 14 13 6 16 16 N 1.38572 * 126.47329 * 179.82060 * 15 14 13 17 17 C 1.46852 * 110.99688 * 106.62000 * 16 15 14 18 18 C 1.53040 * 109.52223 * 174.15731 * 17 16 15 19 19 C 1.53122 * 109.27592 * 59.18311 * 18 17 16 20 20 C 1.50699 * 109.52358 * 182.44237 * 19 18 17 21 21 H 1.07991 * 120.00397 * 119.67963 * 20 19 18 22 22 C 1.37877 * 119.99748 * 299.68018 * 20 19 18 23 23 N 1.31520 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46987 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46733 * 120.00201 * 24 22 20 27 27 H 1.48499 * 109.47204 * 240.00067 * 24 22 20 28 28 C 1.53120 * 109.16011 * 302.34436 * 19 18 17 29 29 C 1.46844 * 111.00274 * 342.41247 * 16 15 14 30 30 H 1.08000 * 120.00737 * 5.21565 * 1 2 3 31 31 H 1.08005 * 119.99941 * 185.20673 * 1 2 3 32 32 H 1.09002 * 109.46890 * 265.02439 * 3 2 1 33 33 H 1.09001 * 109.47068 * 25.02244 * 3 2 1 34 34 H 1.09002 * 109.47037 * 145.02529 * 3 2 1 35 35 H 1.08993 * 109.47114 * 335.32353 * 4 2 1 36 36 H 1.08998 * 109.47009 * 215.31683 * 4 2 1 37 37 H 0.96694 * 114.00132 * 300.00182 * 9 7 6 38 38 H 1.08999 * 115.55235 * 38.33089 * 10 7 6 39 39 H 1.08995 * 117.49839 * 0.02562 * 11 10 7 40 40 H 1.09003 * 117.49389 * 145.01893 * 11 10 7 41 41 H 1.08999 * 117.49583 * 252.51319 * 12 11 10 42 42 H 1.08999 * 117.50037 * 107.49307 * 12 11 10 43 43 H 1.08997 * 109.46536 * 294.17318 * 17 16 15 44 44 H 1.09005 * 109.46205 * 54.14887 * 17 16 15 45 45 H 1.09000 * 109.50308 * 299.24416 * 18 17 16 46 46 H 1.08991 * 109.50321 * 179.11927 * 18 17 16 47 47 H 1.08995 * 109.52276 * 62.24868 * 19 18 17 48 48 H 0.97002 * 119.99890 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.50219 * 297.71633 * 28 19 18 50 50 H 1.09003 * 109.50327 * 177.59650 * 28 19 18 51 51 H 1.09005 * 109.46423 * 305.85317 * 29 16 15 52 52 H 1.09002 * 109.46179 * 65.82008 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4187 -1.6645 -1.3746 6 6 3.5989 -1.4090 -2.0161 7 6 4.7936 -0.6956 -1.4376 8 1 4.5026 -0.1851 -0.5195 9 8 5.2801 0.2610 -2.3811 10 6 5.8944 -1.7125 -1.1287 11 6 6.1586 -2.0427 0.3418 12 6 7.1615 -1.1958 -0.4442 13 7 3.4987 -1.8959 -3.2205 14 7 2.3465 -2.4425 -3.3804 15 6 1.6404 -2.3242 -2.2807 16 7 0.3503 -2.7870 -2.0763 17 6 0.3470 -3.9669 -1.2020 18 6 -1.0965 -4.3616 -0.8812 19 6 -1.8386 -4.6673 -2.1851 20 6 -3.2769 -4.9985 -1.8803 21 1 -4.0698 -4.3940 -2.2951 22 6 -3.5803 -6.0732 -1.0717 23 7 -2.6146 -6.8091 -0.5661 24 14 -5.3630 -6.4833 -0.6932 25 1 -6.2510 -5.5096 -1.3777 26 1 -5.6683 -7.8546 -1.1746 27 1 -5.5867 -6.4122 0.7731 28 6 -1.7787 -3.4390 -3.0974 29 6 -0.3156 -3.0710 -3.3539 30 1 -0.5401 0.9314 -0.0850 31 1 -0.5400 -0.9315 0.0849 32 1 2.3223 1.5753 -1.0238 33 1 1.4386 2.0854 0.4347 34 1 2.9744 1.1988 0.5891 35 1 1.4366 -2.0864 0.4299 36 1 2.9714 -1.2001 0.5946 37 1 5.5579 -0.1236 -3.2236 38 1 6.0070 -2.5184 -1.8539 39 1 5.5480 -1.5359 1.0890 40 1 6.4449 -3.0662 0.5841 41 1 8.1076 -1.6621 -0.7189 42 1 7.2110 -0.1316 -0.2141 43 1 0.8461 -4.7942 -1.7065 44 1 0.8741 -3.7347 -0.2766 45 1 -1.5921 -3.5398 -0.3644 46 1 -1.0989 -5.2466 -0.2451 47 1 -1.3665 -5.5142 -2.6830 48 1 -2.8281 -7.5654 0.0025 49 1 -2.2851 -2.6027 -2.6154 50 1 -2.2686 -3.6649 -4.0446 51 1 -0.2695 -2.1881 -3.9916 52 1 0.1868 -3.9025 -3.8483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343054939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:39 Heat of formation + Delta-G solvation = 74.463005 kcal Electronic energy + Delta-G solvation = -32057.506705 eV Core-core repulsion = 28059.607545 eV Total energy + Delta-G solvation = -3997.899160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.90528 -38.83063 -38.25211 -36.91035 -35.79030 -34.13807 -33.41461 -31.63925 -30.17060 -29.79610 -27.71251 -27.08142 -26.72579 -25.63875 -22.90778 -22.68436 -22.42390 -21.72604 -21.02658 -20.53276 -19.00059 -18.72248 -17.50647 -16.99708 -16.59889 -16.22404 -16.00150 -15.93260 -14.94374 -14.76674 -14.65248 -14.50096 -14.29339 -13.92017 -13.54505 -13.43476 -13.31907 -12.92264 -12.66359 -12.48787 -12.33672 -12.16074 -11.90807 -11.85585 -11.64432 -11.53989 -11.47019 -11.11092 -10.98159 -10.96567 -10.67239 -10.55603 -10.48784 -10.39694 -10.34605 -10.18564 -10.00608 -9.70058 -9.35754 -9.26556 -9.07493 -8.83769 -8.39032 -7.98306 -6.05652 -4.10746 1.67706 1.91359 2.60113 2.93825 3.25714 3.34544 3.34962 3.38377 3.95093 4.08920 4.15370 4.36016 4.39297 4.40474 4.51392 4.53763 4.71240 4.84902 4.90206 5.07500 5.17250 5.24914 5.26985 5.29938 5.30622 5.45743 5.51732 5.53882 5.70039 5.75271 5.76151 5.79174 5.83400 5.93412 5.94535 6.00011 6.07892 6.20306 6.27200 6.44224 6.50795 6.62099 6.64353 6.71326 6.88155 7.00085 7.25600 7.28403 7.29430 7.56491 7.67347 7.90931 8.01155 8.37851 8.89806 8.93181 9.54453 11.00865 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.002813 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.946979 B = 9949.702745 C =10168.154425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.173 4.173 3 C -0.113 4.113 4 C 0.148 3.852 5 N -0.462 5.462 6 C 0.132 3.868 7 C 0.239 3.761 8 H 0.109 0.891 9 O -0.541 6.541 10 C -0.190 4.190 11 C -0.174 4.174 12 C -0.159 4.159 13 N -0.278 5.278 14 N -0.327 5.327 15 C 0.381 3.619 16 N -0.452 5.452 17 C 0.061 3.939 18 C -0.102 4.102 19 C 0.046 3.954 20 C -0.509 4.509 21 H 0.057 0.943 22 C 0.061 3.939 23 N -0.892 5.892 24 Si 0.890 3.110 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 C -0.107 4.107 29 C 0.077 3.923 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.388 0.612 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.040 0.960 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.100 0.900 47 H 0.025 0.975 48 H 0.259 0.741 49 H 0.058 0.942 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.867 13.341 4.597 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.174 4.174 3 C -0.170 4.170 4 C 0.025 3.975 5 N -0.157 5.157 6 C -0.136 4.136 7 C 0.177 3.823 8 H 0.126 0.874 9 O -0.345 6.345 10 C -0.209 4.209 11 C -0.211 4.211 12 C -0.196 4.196 13 N -0.119 5.119 14 N -0.171 5.171 15 C 0.025 3.975 16 N -0.177 5.177 17 C -0.065 4.065 18 C -0.140 4.140 19 C 0.028 3.972 20 C -0.547 4.547 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.718 3.282 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.145 4.145 29 C -0.049 4.049 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.238 0.762 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.118 0.882 47 H 0.043 0.957 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 15.847 13.581 4.017 21.253 hybrid contribution -0.937 -0.999 0.811 1.592 sum 14.910 12.582 4.828 20.098 Atomic orbital electron populations 1.24026 0.94988 1.03094 0.94833 1.21670 0.95774 0.94623 1.05364 1.20812 0.99729 0.94293 1.02151 1.20837 1.00874 0.96324 0.79416 1.46167 1.12706 1.43622 1.13241 1.25265 0.90018 1.06307 0.92012 1.19408 0.84701 0.86773 0.91449 0.87359 1.86545 1.84309 1.34802 1.28893 1.22988 0.98246 1.02302 0.97393 1.22986 1.03384 1.01567 0.93147 1.22888 0.93355 1.00428 1.02967 1.73780 1.12853 1.11838 1.13441 1.74669 0.99453 1.21680 1.21334 1.22944 0.91142 0.96890 0.86559 1.58894 1.06493 1.34160 1.18148 1.22509 1.02163 0.87929 0.93883 1.21742 0.88969 1.01485 1.01843 1.18719 0.95843 0.91669 0.91001 1.21204 0.91822 1.12249 1.29418 0.92523 1.24969 0.97052 0.96068 0.95909 1.69864 1.31189 1.18298 1.33804 0.86567 0.85392 0.78250 0.77978 1.19790 1.21098 1.21099 1.21757 0.91717 1.00435 1.00597 1.22116 0.95911 1.00305 0.86600 0.87980 0.86955 0.91679 0.91543 0.92131 0.87728 0.88924 0.76246 0.86792 0.88643 0.88313 0.88383 0.88169 0.94151 0.92700 0.93451 0.88158 0.95660 0.93069 0.92294 0.92145 0.91463 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 13.88 29.02 0.40 -1.11 16 2 C -0.17 -1.88 5.64 -101.06 -0.57 -2.45 16 3 C -0.11 -1.03 10.05 36.01 0.36 -0.67 16 4 C 0.15 1.65 6.02 -5.19 -0.03 1.62 16 5 N -0.46 -6.58 2.79 -115.37 -0.32 -6.90 16 6 C 0.13 1.85 6.93 -154.02 -1.07 0.78 16 7 C 0.24 2.47 3.47 -27.88 -0.10 2.38 16 8 H 0.11 0.99 6.71 -51.93 -0.35 0.64 16 9 O -0.54 -5.77 13.29 -35.23 -0.47 -6.24 16 10 C -0.19 -1.72 5.31 -90.61 -0.48 -2.20 16 11 C -0.17 -1.29 10.18 -26.73 -0.27 -1.57 16 12 C -0.16 -1.13 10.21 -26.73 -0.27 -1.40 16 13 N -0.28 -4.74 12.11 32.99 0.40 -4.34 16 14 N -0.33 -6.21 11.44 30.31 0.35 -5.86 16 15 C 0.38 6.61 6.90 -318.88 -2.20 4.41 16 16 N -0.45 -7.99 4.67 -174.54 -0.82 -8.81 16 17 C 0.06 1.13 5.32 -3.83 -0.02 1.11 16 18 C -0.10 -2.20 5.12 -26.65 -0.14 -2.33 16 19 C 0.05 1.08 2.16 -91.65 -0.20 0.88 16 20 C -0.51 -13.28 8.56 -34.44 -0.29 -13.57 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 22 C 0.06 1.61 5.31 -17.82 -0.09 1.52 16 23 N -0.89 -24.33 11.37 55.43 0.63 -23.70 16 24 Si 0.89 20.61 29.54 -169.99 -5.02 15.58 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 C -0.11 -2.14 5.32 -26.65 -0.14 -2.29 16 29 C 0.08 1.44 4.87 -3.84 -0.02 1.42 16 30 H 0.10 1.04 8.02 -52.49 -0.42 0.62 16 31 H 0.11 1.46 7.97 -52.48 -0.42 1.04 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.53 8.01 -51.93 -0.42 0.12 16 34 H 0.06 0.46 7.92 -51.93 -0.41 0.04 16 35 H 0.10 1.22 6.00 -51.93 -0.31 0.91 16 36 H 0.09 0.78 7.26 -51.93 -0.38 0.41 16 37 H 0.39 3.54 8.98 45.56 0.41 3.94 16 38 H 0.11 1.18 8.13 -51.93 -0.42 0.76 16 39 H 0.10 0.61 8.07 -51.93 -0.42 0.20 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.90 6.14 -51.93 -0.32 0.58 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 50 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 51 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 52 H 0.05 0.95 8.11 -51.93 -0.42 0.53 16 LS Contribution 416.70 15.07 6.28 6.28 Total: -1.00 -29.72 416.70 -12.06 -41.78 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.96 Total: 5.68 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -5.13 Total: -13.47 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: 0.24 Total: -49.61 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.47 Total: -6.24 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.72 -12.06 -41.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343054939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.243 kcal (2) G-P(sol) polarization free energy of solvation -29.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds