Wall clock time and date at job start Wed Apr 1 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50707 * 119.99782 * 2 1 4 4 C 1.50701 * 120.00309 * 179.97438 * 2 1 3 5 5 N 1.46506 * 109.46886 * 95.32119 * 4 2 1 6 6 C 1.36735 * 127.13650 * 95.21943 * 5 4 2 7 7 C 1.50700 * 126.34747 * 359.93939 * 6 5 4 8 8 H 1.09003 * 109.47269 * 345.62435 * 7 6 5 9 9 O 1.42904 * 109.47101 * 225.61886 * 7 6 5 10 10 C 1.53007 * 109.46815 * 105.62324 * 7 6 5 11 11 C 1.53007 * 117.49463 * 252.62304 * 10 7 6 12 12 C 1.53000 * 59.99941 * 252.51351 * 11 10 7 13 13 N 1.30296 * 107.30315 * 179.97438 * 6 5 4 14 14 N 1.28523 * 110.05301 * 359.72784 * 13 6 5 15 15 C 1.31221 * 109.86316 * 0.45337 * 14 13 6 16 16 N 1.38572 * 126.47329 * 179.82060 * 15 14 13 17 17 C 1.46852 * 110.99688 * 106.62000 * 16 15 14 18 18 C 1.53040 * 109.52223 * 174.15731 * 17 16 15 19 19 C 1.53122 * 109.27592 * 59.18311 * 18 17 16 20 20 C 1.50699 * 109.52358 * 182.44237 * 19 18 17 21 21 H 1.07991 * 120.00397 * 119.67963 * 20 19 18 22 22 C 1.37877 * 119.99748 * 299.68018 * 20 19 18 23 23 N 1.31520 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46987 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46733 * 120.00201 * 24 22 20 27 27 H 1.48499 * 109.47204 * 240.00067 * 24 22 20 28 28 C 1.53120 * 109.16011 * 302.34436 * 19 18 17 29 29 C 1.46844 * 111.00274 * 342.41247 * 16 15 14 30 30 H 1.08000 * 120.00737 * 5.21565 * 1 2 3 31 31 H 1.08005 * 119.99941 * 185.20673 * 1 2 3 32 32 H 1.09002 * 109.46890 * 265.02439 * 3 2 1 33 33 H 1.09001 * 109.47068 * 25.02244 * 3 2 1 34 34 H 1.09002 * 109.47037 * 145.02529 * 3 2 1 35 35 H 1.08993 * 109.47114 * 335.32353 * 4 2 1 36 36 H 1.08998 * 109.47009 * 215.31683 * 4 2 1 37 37 H 0.96694 * 114.00132 * 300.00182 * 9 7 6 38 38 H 1.08999 * 115.55235 * 38.33089 * 10 7 6 39 39 H 1.08995 * 117.49839 * 0.02562 * 11 10 7 40 40 H 1.09003 * 117.49389 * 145.01893 * 11 10 7 41 41 H 1.08999 * 117.49583 * 252.51319 * 12 11 10 42 42 H 1.08999 * 117.50037 * 107.49307 * 12 11 10 43 43 H 1.08997 * 109.46536 * 294.17318 * 17 16 15 44 44 H 1.09005 * 109.46205 * 54.14887 * 17 16 15 45 45 H 1.09000 * 109.50308 * 299.24416 * 18 17 16 46 46 H 1.08991 * 109.50321 * 179.11927 * 18 17 16 47 47 H 1.08995 * 109.52276 * 62.24868 * 19 18 17 48 48 H 0.97002 * 119.99890 * 180.02562 * 23 22 20 49 49 H 1.09001 * 109.50219 * 297.71633 * 28 19 18 50 50 H 1.09003 * 109.50327 * 177.59650 * 28 19 18 51 51 H 1.09005 * 109.46423 * 305.85317 * 29 16 15 52 52 H 1.09002 * 109.46179 * 65.82008 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3051 0.0006 5 7 2.4187 -1.6645 -1.3746 6 6 3.5989 -1.4090 -2.0161 7 6 4.7936 -0.6956 -1.4376 8 1 4.5026 -0.1851 -0.5195 9 8 5.2801 0.2610 -2.3811 10 6 5.8944 -1.7125 -1.1287 11 6 6.1586 -2.0427 0.3418 12 6 7.1615 -1.1958 -0.4442 13 7 3.4987 -1.8959 -3.2205 14 7 2.3465 -2.4425 -3.3804 15 6 1.6404 -2.3242 -2.2807 16 7 0.3503 -2.7870 -2.0763 17 6 0.3470 -3.9669 -1.2020 18 6 -1.0965 -4.3616 -0.8812 19 6 -1.8386 -4.6673 -2.1851 20 6 -3.2769 -4.9985 -1.8803 21 1 -4.0698 -4.3940 -2.2951 22 6 -3.5803 -6.0732 -1.0717 23 7 -2.6146 -6.8091 -0.5661 24 14 -5.3630 -6.4833 -0.6932 25 1 -6.2510 -5.5096 -1.3777 26 1 -5.6683 -7.8546 -1.1746 27 1 -5.5867 -6.4122 0.7731 28 6 -1.7787 -3.4390 -3.0974 29 6 -0.3156 -3.0710 -3.3539 30 1 -0.5401 0.9314 -0.0850 31 1 -0.5400 -0.9315 0.0849 32 1 2.3223 1.5753 -1.0238 33 1 1.4386 2.0854 0.4347 34 1 2.9744 1.1988 0.5891 35 1 1.4366 -2.0864 0.4299 36 1 2.9714 -1.2001 0.5946 37 1 5.5579 -0.1236 -3.2236 38 1 6.0070 -2.5184 -1.8539 39 1 5.5480 -1.5359 1.0890 40 1 6.4449 -3.0662 0.5841 41 1 8.1076 -1.6621 -0.7189 42 1 7.2110 -0.1316 -0.2141 43 1 0.8461 -4.7942 -1.7065 44 1 0.8741 -3.7347 -0.2766 45 1 -1.5921 -3.5398 -0.3644 46 1 -1.0989 -5.2466 -0.2451 47 1 -1.3665 -5.5142 -2.6830 48 1 -2.8281 -7.5654 0.0025 49 1 -2.2851 -2.6027 -2.6154 50 1 -2.2686 -3.6649 -4.0446 51 1 -0.2695 -2.1881 -3.9916 52 1 0.1868 -3.9025 -3.8483 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343054939.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:38 Heat of formation + Delta-G solvation = 59.255117 kcal Electronic energy + Delta-G solvation = -32058.166169 eV Core-core repulsion = 28059.607545 eV Total energy + Delta-G solvation = -3998.558623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.13469 -40.09009 -39.30752 -37.85998 -36.51949 -35.88412 -34.49729 -33.41378 -31.76506 -31.08534 -28.67703 -28.09632 -27.75354 -27.28307 -24.47228 -24.01847 -23.27186 -22.72114 -22.29637 -21.60099 -20.40967 -19.93126 -18.60741 -18.40818 -17.81757 -17.55742 -17.13927 -17.01038 -16.50308 -15.88103 -15.66438 -15.55469 -15.52886 -14.99504 -14.83029 -14.66570 -14.44657 -14.20079 -14.13047 -14.06303 -13.32548 -13.18129 -13.08913 -12.97820 -12.85637 -12.72282 -12.57896 -12.41487 -12.37629 -12.29764 -12.14921 -12.01188 -11.71080 -11.66263 -11.49240 -11.27789 -11.17885 -11.13182 -10.92436 -10.75055 -10.60817 -10.40628 -10.17269 -9.38991 -8.08492 -6.20585 0.57831 0.83221 1.41286 1.44673 1.54427 1.54872 1.67870 2.44740 2.63883 2.73247 3.14588 3.19623 3.37420 3.52160 3.63108 3.67760 3.78048 3.82589 3.97451 4.05483 4.10189 4.13564 4.16682 4.30486 4.31161 4.39353 4.50381 4.57744 4.61690 4.65188 4.74660 4.79256 4.80519 4.88960 4.89875 4.94828 4.97395 5.00933 5.09266 5.15265 5.18550 5.21364 5.27000 5.43149 5.53221 5.59129 5.62678 5.71181 5.79403 5.98056 6.11307 6.21195 6.38292 6.52087 6.89720 7.47504 7.63656 8.96753 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016467 B = 0.002813 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.946979 B = 9949.702745 C =10168.154425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.170 4.170 3 C -0.110 4.110 4 C 0.138 3.862 5 N -0.455 5.455 6 C 0.154 3.846 7 C 0.244 3.756 8 H 0.130 0.870 9 O -0.546 6.546 10 C -0.206 4.206 11 C -0.169 4.169 12 C -0.145 4.145 13 N -0.310 5.310 14 N -0.359 5.359 15 C 0.363 3.637 16 N -0.443 5.443 17 C 0.076 3.924 18 C -0.088 4.088 19 C 0.043 3.957 20 C -0.527 4.527 21 H 0.054 0.946 22 C 0.015 3.985 23 N -0.917 5.917 24 Si 0.951 3.049 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.279 1.279 28 C -0.095 4.095 29 C 0.088 3.912 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.394 0.606 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.020 0.980 44 H 0.080 0.920 45 H 0.047 0.953 46 H 0.073 0.927 47 H -0.011 1.011 48 H 0.260 0.740 49 H 0.062 0.938 50 H 0.062 0.938 51 H 0.076 0.924 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.010 15.392 6.348 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.171 4.171 3 C -0.167 4.167 4 C 0.017 3.983 5 N -0.149 5.149 6 C -0.116 4.116 7 C 0.182 3.818 8 H 0.148 0.852 9 O -0.351 6.351 10 C -0.226 4.226 11 C -0.206 4.206 12 C -0.181 4.181 13 N -0.150 5.150 14 N -0.204 5.204 15 C 0.006 3.994 16 N -0.167 5.167 17 C -0.051 4.051 18 C -0.126 4.126 19 C 0.025 3.975 20 C -0.565 4.565 21 H 0.072 0.928 22 C -0.183 4.183 23 N -0.556 5.556 24 Si 0.777 3.223 25 H -0.193 1.193 26 H -0.211 1.211 27 H -0.205 1.205 28 C -0.133 4.133 29 C -0.039 4.039 30 H 0.131 0.869 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.146 0.854 37 H 0.244 0.756 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.038 0.962 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.008 0.992 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 17.002 15.649 5.767 23.816 hybrid contribution -1.198 -1.623 0.260 2.034 sum 15.804 14.026 6.027 21.973 Atomic orbital electron populations 1.24046 0.95486 1.02831 0.95767 1.21818 0.95616 0.95224 1.04393 1.20828 1.00707 0.93394 1.01735 1.21179 1.02679 0.96412 0.78026 1.46343 1.12061 1.42653 1.13873 1.26093 0.90435 1.03978 0.91050 1.19670 0.83555 0.86912 0.91668 0.85215 1.86530 1.84091 1.35099 1.29381 1.22817 0.99350 1.02119 0.98326 1.23127 1.03336 1.02010 0.92130 1.22967 0.92813 1.01017 1.01349 1.73717 1.12401 1.13499 1.15410 1.74572 1.00479 1.22627 1.22676 1.22815 0.91102 0.98133 0.87393 1.58826 1.07249 1.33355 1.17318 1.22253 1.00004 0.87856 0.94971 1.21435 0.90738 1.00225 1.00222 1.18677 0.94696 0.91845 0.92289 1.21522 0.92968 1.12500 1.29472 0.92815 1.25676 1.00710 0.96058 0.95868 1.69994 1.32862 1.18586 1.34196 0.85617 0.81009 0.77802 0.77878 1.19268 1.21130 1.20524 1.21584 0.92903 0.98873 0.99930 1.21924 0.94777 0.99993 0.87229 0.86858 0.88813 0.93087 0.90384 0.89886 0.88261 0.85358 0.75632 0.88739 0.86974 0.88272 0.87666 0.87207 0.96207 0.90179 0.93374 0.90893 0.99248 0.93064 0.91897 0.91904 0.90569 0.94964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 13.88 67.78 0.94 -2.15 16 2 C -0.17 -3.27 5.64 -16.48 -0.09 -3.36 16 3 C -0.11 -1.64 10.05 71.24 0.72 -0.92 16 4 C 0.14 2.73 6.02 85.63 0.52 3.24 16 5 N -0.46 -12.26 2.79 -518.91 -1.45 -13.71 16 6 C 0.15 4.07 6.93 137.64 0.95 5.03 16 7 C 0.24 4.40 3.47 29.85 0.10 4.51 16 8 H 0.13 1.80 6.71 -2.39 -0.02 1.78 16 9 O -0.55 -10.41 13.29 -148.98 -1.98 -12.39 16 10 C -0.21 -3.26 5.31 -10.79 -0.06 -3.32 16 11 C -0.17 -1.96 10.18 30.60 0.31 -1.65 16 12 C -0.14 -1.60 10.21 30.59 0.31 -1.28 16 13 N -0.31 -10.50 12.11 -49.54 -0.60 -11.10 16 14 N -0.36 -13.77 11.44 -58.01 -0.66 -14.44 16 15 C 0.36 12.53 6.90 260.11 1.79 14.32 16 16 N -0.44 -15.76 4.67 -706.14 -3.30 -19.06 16 17 C 0.08 2.84 5.32 86.33 0.46 3.30 16 18 C -0.09 -3.89 5.12 30.65 0.16 -3.73 16 19 C 0.04 2.11 2.16 -11.46 -0.02 2.09 16 20 C -0.53 -28.04 8.56 25.60 0.22 -27.82 16 21 H 0.05 2.83 7.74 -2.91 -0.02 2.80 16 22 C 0.02 0.83 5.31 84.65 0.45 1.28 16 23 N -0.92 -51.13 11.37 21.45 0.24 -50.89 16 24 Si 0.95 42.55 29.54 68.60 2.03 44.58 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 27 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 28 C -0.09 -3.88 5.32 30.65 0.16 -3.72 16 29 C 0.09 3.33 4.87 86.33 0.42 3.75 16 30 H 0.11 2.14 8.02 -2.91 -0.02 2.11 16 31 H 0.09 2.38 7.97 -2.91 -0.02 2.36 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.00 8.01 -2.39 -0.02 0.98 16 34 H 0.08 0.86 7.92 -2.39 -0.02 0.84 16 35 H 0.10 2.11 6.00 -2.39 -0.01 2.10 16 36 H 0.13 1.62 7.26 -2.39 -0.02 1.60 16 37 H 0.39 6.64 8.98 -74.06 -0.66 5.98 16 38 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 39 H 0.11 0.94 8.07 -2.39 -0.02 0.92 16 40 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 2.59 6.14 -2.38 -0.01 2.57 16 45 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.07 3.66 6.17 -2.39 -0.01 3.65 16 47 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 49 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 50 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 51 H 0.08 2.77 8.10 -2.38 -0.02 2.75 16 52 H 0.03 1.32 8.11 -2.39 -0.02 1.30 16 Total: -1.00 -65.80 416.70 1.87 -63.93 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.25 Total: 23.52 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 7.34 Total: -10.45 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -5.77 Total: -109.19 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.98 Total: -12.39 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.80 1.87 -63.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343054939.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.185 kcal (2) G-P(sol) polarization free energy of solvation -65.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds