Wall clock time and date at job start Wed Apr 1 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00381 * 2 1 4 4 C 1.50708 * 120.00011 * 180.02562 * 2 1 3 5 5 N 1.46496 * 109.47256 * 94.99723 * 4 2 1 6 6 C 1.36744 * 127.13656 * 95.25604 * 5 4 2 7 7 C 1.50695 * 126.34515 * 0.02562 * 6 5 4 8 8 C 1.52998 * 109.47084 * 89.99958 * 7 6 5 9 9 C 1.50704 * 109.47255 * 179.97438 * 8 7 6 10 10 H 1.07997 * 119.99908 * 359.97438 * 9 8 7 11 11 C 1.37877 * 120.00030 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99914 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00144 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47217 * 59.99477 * 13 11 9 15 15 H 1.48493 * 109.47652 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.46785 * 299.99649 * 13 11 9 17 17 N 1.30294 * 107.30353 * 180.26350 * 6 5 4 18 18 N 1.28521 * 110.05471 * 359.56361 * 17 6 5 19 19 C 1.31215 * 109.86414 * 0.44855 * 18 17 6 20 20 N 1.38577 * 126.47673 * 179.73082 * 19 18 17 21 21 C 1.46833 * 110.99732 * 68.42163 * 20 19 18 22 22 C 1.53249 * 109.42450 * 172.12092 * 21 20 19 23 23 C 1.52627 * 109.01750 * 56.66469 * 22 21 20 24 24 C 1.53452 * 113.80163 * 174.69659 * 23 22 21 25 25 C 1.54133 * 85.63553 * 267.97224 * 24 23 22 26 26 O 1.43556 * 113.76449 * 78.18125 * 23 22 21 27 27 C 1.52635 * 112.99247 * 306.49421 * 23 22 21 28 28 C 1.46830 * 111.00326 * 303.85598 * 20 19 18 29 29 H 1.07999 * 119.99498 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.00037 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47475 * 239.99736 * 3 2 1 32 32 H 1.09003 * 109.47096 * 0.02562 * 3 2 1 33 33 H 1.09006 * 109.46962 * 119.99938 * 3 2 1 34 34 H 1.09001 * 109.46734 * 335.00104 * 4 2 1 35 35 H 1.08993 * 109.47417 * 215.00401 * 4 2 1 36 36 H 1.09007 * 109.47561 * 329.99950 * 7 6 5 37 37 H 1.09003 * 109.47443 * 209.99904 * 7 6 5 38 38 H 1.08997 * 109.47337 * 59.99898 * 8 7 6 39 39 H 1.09001 * 109.47359 * 299.99930 * 8 7 6 40 40 H 0.97007 * 119.99773 * 180.02562 * 12 11 9 41 41 H 1.08998 * 109.48111 * 292.10423 * 21 20 19 42 42 H 1.08997 * 109.48032 * 52.13571 * 21 20 19 43 43 H 1.09002 * 109.54023 * 296.80517 * 22 21 20 44 44 H 1.08995 * 109.62104 * 176.57140 * 22 21 20 45 45 H 1.08998 * 113.85027 * 22.15269 * 24 23 22 46 46 H 1.09001 * 113.84426 * 153.79766 * 24 23 22 47 47 H 1.09002 * 113.85019 * 91.99995 * 25 24 23 48 48 H 1.08998 * 113.85047 * 223.66610 * 25 24 23 49 49 H 1.08997 * 109.54456 * 293.64381 * 27 23 22 50 50 H 1.09010 * 109.61792 * 173.41495 * 27 23 22 51 51 H 1.09004 * 109.47774 * 307.86729 * 28 20 19 52 52 H 1.09007 * 109.48060 * 67.89092 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4119 -1.6673 -1.3767 6 6 3.5893 -1.4137 -2.0242 7 6 4.7879 -0.7017 -1.4520 8 6 5.7203 -1.7208 -0.7940 9 6 6.9192 -1.0089 -0.2223 10 1 7.0076 0.0631 -0.3190 11 6 7.9039 -1.7262 0.4234 12 7 7.7966 -3.0317 0.5407 13 14 9.3897 -0.8437 1.1326 14 1 8.9413 0.1436 2.1472 15 1 10.2947 -1.8327 1.7712 16 1 10.1139 -0.1403 0.0436 17 7 3.4808 -1.8973 -3.2292 18 7 2.3274 -2.4430 -3.3829 19 6 1.6288 -2.3276 -2.2782 20 7 0.3393 -2.7890 -2.0670 21 6 0.3024 -4.2568 -2.0470 22 6 -1.0922 -4.7257 -1.6181 23 6 -2.1303 -4.1298 -2.5651 24 6 -3.5583 -4.6322 -2.3139 25 6 -3.2335 -5.7189 -3.3577 26 8 -2.2182 -4.8075 -3.8276 27 6 -2.0237 -2.6122 -2.6879 28 6 -0.5860 -2.2417 -3.0671 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 2.6902 1.3628 -0.8899 32 1 1.3553 2.1336 0.0005 33 1 2.6902 1.3627 0.8900 34 1 1.4385 -2.0857 0.4334 35 1 2.9742 -1.1993 0.5889 36 1 4.4587 0.0233 -0.7076 37 1 5.3198 -0.1857 -2.2513 38 1 6.0495 -2.4458 -1.5383 39 1 5.1884 -2.2368 0.0054 40 1 8.4892 -3.5364 0.9953 41 1 0.5241 -4.6396 -3.0431 42 1 1.0443 -4.6294 -1.3407 43 1 -1.2923 -4.3910 -0.6003 44 1 -1.1416 -5.8137 -1.6608 45 1 -3.7183 -5.0209 -1.3083 46 1 -4.3331 -3.9343 -2.6311 47 1 -2.8357 -6.6381 -2.9277 48 1 -4.0348 -5.8940 -4.0755 49 1 -2.2801 -2.1503 -1.7346 50 1 -2.7071 -2.2585 -3.4601 51 1 -0.4866 -1.1566 -3.0988 52 1 -0.3497 -2.6572 -4.0468 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343537670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:56 Heat of formation + Delta-G solvation = 81.183036 kcal Electronic energy + Delta-G solvation = -31714.162666 eV Core-core repulsion = 27716.554909 eV Total energy + Delta-G solvation = -3997.607757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.60044 -41.28448 -37.96152 -36.75091 -34.19354 -33.20158 -32.57680 -31.38640 -31.35251 -29.67717 -28.16873 -27.48181 -26.75999 -25.33026 -24.86210 -23.67657 -22.16166 -21.79437 -20.67457 -20.15600 -19.25927 -18.71101 -17.27298 -16.51157 -16.45017 -16.31499 -16.08478 -15.91413 -15.35818 -14.98635 -14.59270 -14.50834 -14.33329 -14.08686 -13.68039 -13.42477 -13.24292 -13.02407 -12.94062 -12.74252 -12.46110 -12.30236 -12.18702 -11.94832 -11.89253 -11.53846 -11.49983 -11.38614 -11.27223 -11.10474 -10.98465 -10.93049 -10.71114 -10.49169 -10.32674 -9.97050 -9.84320 -9.82039 -9.68249 -9.29182 -9.24493 -8.74310 -8.41287 -8.36810 -6.05738 -4.10000 1.85392 2.14754 2.73431 3.29941 3.30464 3.31737 3.35610 3.37904 3.82753 3.88842 4.33648 4.40749 4.41225 4.65170 4.67710 4.71187 4.81202 4.90946 5.00234 5.08368 5.10034 5.13651 5.17156 5.29556 5.30219 5.30418 5.40855 5.48628 5.51324 5.53054 5.56803 5.61720 5.69830 5.71392 5.75492 5.76604 5.80416 5.85905 5.95435 5.97146 6.20139 6.33627 6.36231 6.43535 6.47839 6.67936 6.69554 6.74431 6.98617 7.50872 7.54622 7.68688 7.91453 8.28940 8.95824 9.20809 9.54587 11.05305 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016541 B = 0.002642 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.353933 B =10593.794035 C =11327.791531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.145 4.145 3 C -0.121 4.121 4 C 0.147 3.853 5 N -0.458 5.458 6 C 0.218 3.782 7 C -0.033 4.033 8 C 0.033 3.967 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 N -0.299 5.299 18 N -0.312 5.312 19 C 0.324 3.676 20 N -0.458 5.458 21 C 0.068 3.932 22 C -0.113 4.113 23 C 0.091 3.909 24 C -0.179 4.179 25 C 0.031 3.969 26 O -0.368 6.368 27 C -0.102 4.102 28 C 0.072 3.928 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.107 0.893 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.262 0.738 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.081 0.919 51 H 0.077 0.923 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.784 0.350 -0.195 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.178 4.178 4 C 0.025 3.975 5 N -0.150 5.150 6 C -0.049 4.049 7 C -0.073 4.073 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 N -0.139 5.139 18 N -0.156 5.156 19 C -0.033 4.033 20 N -0.184 5.184 21 C -0.059 4.059 22 C -0.151 4.151 23 C 0.052 3.948 24 C -0.216 4.216 25 C -0.046 4.046 26 O -0.287 6.287 27 C -0.140 4.140 28 C -0.055 4.055 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.105 0.895 50 H 0.100 0.900 51 H 0.095 0.905 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.350 0.009 -1.335 25.385 hybrid contribution 0.593 0.290 1.213 1.381 sum -24.757 0.299 -0.121 24.759 Atomic orbital electron populations 1.23855 0.94997 1.02163 0.99027 1.21864 0.95660 0.95341 1.01725 1.20913 1.00302 0.93636 1.02937 1.20791 1.01732 0.95045 0.79952 1.46345 1.12811 1.43015 1.12827 1.25615 0.88673 1.00744 0.89848 1.20486 0.88748 0.98257 0.99837 1.19059 0.92765 0.93435 0.95292 1.21092 1.04914 0.93850 1.36384 0.92345 1.25007 0.98292 0.94806 0.96108 1.69964 1.34493 1.05846 1.42764 0.86623 0.82550 0.79302 0.79337 1.20203 1.21294 1.20076 1.74061 1.11219 1.13793 1.14810 1.74510 1.00809 1.19555 1.20689 1.22045 0.92039 1.01579 0.87589 1.58413 1.00533 1.09464 1.49983 1.22089 0.97148 0.84624 1.02037 1.21747 0.93425 1.00651 0.99262 1.22364 0.94027 0.93813 0.84639 1.24654 0.97665 0.98537 1.00772 1.23848 0.91075 0.93661 0.96000 1.89746 1.60721 1.48262 1.30016 1.21632 0.96406 0.92799 1.03187 1.22034 0.90296 0.99899 0.93250 0.88354 0.87666 0.91354 0.91996 0.90853 0.88360 0.87466 0.91061 0.89342 0.95659 0.96815 0.92809 0.92491 0.90275 0.89486 0.90263 0.90676 0.88749 0.90260 0.89305 0.89480 0.90033 0.90470 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 13.90 29.01 0.40 -1.19 16 2 C -0.14 -1.69 5.64 -101.06 -0.57 -2.26 16 3 C -0.12 -1.36 9.84 36.00 0.35 -1.01 16 4 C 0.15 2.01 6.12 -5.19 -0.03 1.98 16 5 N -0.46 -7.77 2.79 -115.37 -0.32 -8.09 16 6 C 0.22 4.38 7.32 -154.01 -1.13 3.25 16 7 C -0.03 -0.68 5.32 -27.89 -0.15 -0.83 16 8 C 0.03 0.83 4.95 -27.88 -0.14 0.69 16 9 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 12 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 13 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 N -0.30 -6.63 12.18 32.99 0.40 -6.23 16 18 N -0.31 -6.39 12.13 30.31 0.37 -6.03 16 19 C 0.32 5.51 6.43 -318.88 -2.05 3.46 16 20 N -0.46 -5.99 4.62 -174.32 -0.81 -6.79 16 21 C 0.07 0.85 5.43 -3.73 -0.02 0.83 16 22 C -0.11 -1.00 5.48 -26.79 -0.15 -1.15 16 23 C 0.09 0.80 1.11 -91.01 -0.10 0.70 16 24 C -0.18 -1.13 7.52 -25.91 -0.19 -1.32 16 25 C 0.03 0.22 8.85 37.51 0.33 0.56 16 26 O -0.37 -4.06 12.12 -35.23 -0.43 -4.48 16 27 C -0.10 -0.89 5.58 -26.80 -0.15 -1.04 16 28 C 0.07 0.86 5.35 -3.74 -0.02 0.84 16 29 H 0.10 0.83 7.83 -52.49 -0.41 0.42 16 30 H 0.11 0.98 7.99 -52.49 -0.42 0.56 16 31 H 0.07 0.87 7.55 -51.93 -0.39 0.48 16 32 H 0.06 0.59 7.78 -51.93 -0.40 0.18 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.20 7.99 -51.93 -0.41 0.78 16 35 H 0.11 1.56 7.62 -51.93 -0.40 1.16 16 36 H 0.07 1.29 6.89 -51.92 -0.36 0.93 16 37 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.03 8.08 -51.93 -0.42 0.61 16 43 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.08 0.63 7.54 -51.93 -0.39 0.24 16 45 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 46 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 47 H 0.08 0.49 7.82 -51.93 -0.41 0.09 16 48 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 51 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 52 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 420.22 15.07 6.33 6.33 Total: -1.00 -33.11 420.22 -11.80 -44.90 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -9.04 Total: -0.59 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.02 Total: -9.44 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.38 Total: -52.81 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.43 Total: -4.48 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -33.11 -11.80 -44.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343537670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.085 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds