Wall clock time and date at job start Wed Apr 1 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99919 * 2 1 4 4 C 1.50698 * 120.00145 * 180.02562 * 2 1 3 5 5 N 1.46504 * 109.46875 * 265.00054 * 4 2 1 6 6 C 1.36742 * 127.13680 * 91.82770 * 5 4 2 7 7 C 1.50698 * 126.34581 * 359.92993 * 6 5 4 8 8 C 1.53778 * 113.61603 * 219.14048 * 7 6 5 9 9 C 1.53959 * 87.02196 * 220.05323 * 8 7 6 10 10 O 1.42898 * 113.66488 * 139.93205 * 9 8 7 11 11 C 1.53778 * 87.10883 * 25.36196 * 9 8 7 12 12 N 1.30290 * 107.30516 * 179.97438 * 6 5 4 13 13 N 1.28530 * 110.05370 * 0.02562 * 12 6 5 14 14 C 1.31218 * 109.85846 * 359.73960 * 13 12 6 15 15 N 1.38584 * 126.47455 * 180.26685 * 14 13 12 16 16 C 1.46846 * 111.00240 * 68.59962 * 15 14 13 17 17 C 1.53036 * 109.52500 * 174.16578 * 16 15 14 18 18 C 1.53126 * 109.27976 * 59.17688 * 17 16 15 19 19 C 1.53115 * 109.15953 * 302.35068 * 18 17 16 20 20 H 1.09006 * 109.50190 * 297.70851 * 19 18 17 21 21 C 1.50696 * 109.53389 * 177.61468 * 19 18 17 22 22 H 1.08004 * 119.99950 * 240.17427 * 21 19 18 23 23 C 1.37885 * 120.00168 * 60.17720 * 21 19 18 24 24 N 1.31504 * 119.99783 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99982 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46833 * 89.99871 * 25 23 21 27 27 H 1.48497 * 109.46929 * 209.99770 * 25 23 21 28 28 H 1.48505 * 109.47169 * 329.99819 * 25 23 21 29 29 C 1.46851 * 110.99415 * 304.39173 * 15 14 13 30 30 H 1.07999 * 120.00068 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00348 * 359.72685 * 1 2 3 32 32 H 1.08995 * 109.46675 * 89.99631 * 3 2 1 33 33 H 1.08993 * 109.47128 * 209.99918 * 3 2 1 34 34 H 1.08998 * 109.46983 * 330.00515 * 3 2 1 35 35 H 1.09003 * 109.47080 * 24.99697 * 4 2 1 36 36 H 1.08996 * 109.47348 * 144.99648 * 4 2 1 37 37 H 1.09002 * 112.85032 * 350.34595 * 7 6 5 38 38 H 1.08996 * 113.61673 * 334.57319 * 8 7 6 39 39 H 1.09004 * 113.61147 * 105.47696 * 8 7 6 40 40 H 1.09003 * 113.60824 * 270.80352 * 9 8 7 41 41 H 0.96709 * 113.99783 * 82.44467 * 10 9 8 42 42 H 1.09002 * 113.61535 * 220.09163 * 11 9 8 43 43 H 1.08998 * 113.69037 * 89.20022 * 11 9 8 44 44 H 1.09006 * 109.46069 * 294.17720 * 16 15 14 45 45 H 1.08998 * 109.46273 * 54.14359 * 16 15 14 46 46 H 1.08998 * 109.50201 * 299.24112 * 17 16 15 47 47 H 1.08993 * 109.50523 * 179.12007 * 17 16 15 48 48 H 1.08995 * 109.51891 * 182.44483 * 18 17 16 49 49 H 1.09001 * 109.57038 * 62.28370 * 18 17 16 50 50 H 0.97004 * 120.00199 * 179.97438 * 24 23 21 51 51 H 1.08995 * 109.46494 * 305.85194 * 29 15 14 52 52 H 1.09001 * 109.46608 * 65.83843 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.4120 -1.6684 1.3753 6 6 1.6838 -2.4447 2.2337 7 6 0.3560 -3.0949 1.9420 8 6 -0.6212 -3.0595 3.1289 9 6 -1.0204 -4.4945 2.7394 10 8 -1.2180 -5.3591 3.8599 11 6 0.3715 -4.6247 2.0988 12 7 2.3504 -2.5173 3.3508 13 7 3.4415 -1.8444 3.2575 14 6 3.5328 -1.3065 2.0641 15 7 4.5704 -0.5177 1.5932 16 6 5.7986 -1.3059 1.4302 17 6 6.8778 -0.4415 0.7744 18 6 7.1478 0.7831 1.6531 19 6 5.8428 1.5601 1.8471 20 1 5.4848 1.9170 0.8813 21 6 6.0865 2.7350 2.7587 22 1 5.5472 2.8162 3.6909 23 6 6.9981 3.7063 2.4028 24 7 7.6551 3.6072 1.2679 25 14 7.3008 5.1624 3.5332 26 1 8.3955 4.8337 4.4813 27 1 7.6859 6.3460 2.7234 28 1 6.0615 5.4647 4.2936 29 6 4.7935 0.6376 2.4718 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9353 0.0045 32 1 2.2451 1.6197 1.0276 33 1 3.0159 1.1748 -0.5138 34 1 1.4744 2.0648 -0.5137 35 1 1.4386 -2.0853 -0.4352 36 1 2.9742 -1.1986 -0.5900 37 1 -0.0840 -2.7567 1.0039 38 1 -0.1282 -2.9915 4.0986 39 1 -1.4261 -2.3340 3.0103 40 1 -1.8381 -4.5402 2.0200 41 1 -2.0918 -5.2817 4.2671 42 1 0.3671 -5.1609 1.1499 43 1 1.1375 -4.9854 2.7853 44 1 6.1466 -1.6423 2.4069 45 1 5.5938 -2.1714 0.8000 46 1 6.5361 -0.1161 -0.2081 47 1 7.7941 -1.0221 0.6678 48 1 7.8846 1.4237 1.1685 49 1 7.5271 0.4603 2.6227 50 1 8.2962 4.2908 1.0173 51 1 3.8588 1.1838 2.5980 52 1 5.1465 0.2922 3.4435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343692862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:14 Heat of formation + Delta-G solvation = 70.069195 kcal Electronic energy + Delta-G solvation = -31967.320233 eV Core-core repulsion = 27969.230543 eV Total energy + Delta-G solvation = -3998.089690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.82802 -39.45643 -38.22872 -36.88167 -35.36794 -33.87801 -33.26529 -31.87064 -30.01904 -29.15689 -27.45023 -26.95061 -26.02653 -25.25927 -25.02399 -23.77971 -21.61880 -21.39616 -20.91073 -19.58323 -18.84846 -18.53440 -17.96824 -17.11030 -16.42626 -16.14294 -15.77449 -15.49160 -15.15208 -14.79554 -14.51713 -14.29696 -14.03503 -13.82820 -13.63140 -13.02983 -12.87344 -12.68258 -12.64671 -12.51788 -12.47383 -12.17116 -12.03984 -11.88865 -11.75483 -11.58068 -11.34409 -11.27080 -10.96825 -10.82862 -10.80261 -10.74169 -10.31964 -10.19837 -10.12250 -9.94540 -9.92047 -9.58052 -9.38111 -9.23620 -8.87908 -8.62245 -8.38766 -8.14388 -6.02408 -4.08119 1.67005 1.94190 2.66448 3.03136 3.29798 3.36614 3.40309 3.84102 4.13586 4.17285 4.28185 4.43802 4.45380 4.46869 4.52975 4.56964 4.62627 4.89344 5.09596 5.23966 5.28286 5.35782 5.41040 5.49578 5.51165 5.54822 5.65636 5.74375 5.76321 5.81262 5.85944 5.88966 5.94490 6.05682 6.09639 6.19043 6.26413 6.36332 6.39039 6.43493 6.57114 6.65615 6.68116 6.77961 6.88159 7.06143 7.30781 7.37698 7.40192 7.70989 7.76538 7.98213 8.09091 8.40616 8.94889 8.99174 9.56610 11.03717 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.002855 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.760335 B = 9803.888420 C =10064.067492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.134 4.134 3 C -0.116 4.116 4 C 0.147 3.853 5 N -0.461 5.461 6 C 0.178 3.822 7 C -0.024 4.024 8 C -0.149 4.149 9 C 0.079 3.921 10 O -0.555 6.555 11 C -0.113 4.113 12 N -0.283 5.283 13 N -0.315 5.315 14 C 0.368 3.632 15 N -0.466 5.466 16 C 0.074 3.926 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.060 3.940 20 H 0.035 0.965 21 C -0.514 4.514 22 H 0.055 0.945 23 C 0.065 3.935 24 N -0.888 5.888 25 Si 0.890 3.110 26 H -0.281 1.281 27 H -0.287 1.287 28 H -0.274 1.274 29 C 0.083 3.917 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.377 0.623 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.044 0.956 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.094 0.906 49 H 0.035 0.965 50 H 0.260 0.740 51 H 0.058 0.942 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.262 -13.361 -5.877 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.135 4.135 3 C -0.173 4.173 4 C 0.025 3.975 5 N -0.154 5.154 6 C -0.089 4.089 7 C -0.045 4.045 8 C -0.188 4.188 9 C 0.020 3.980 10 O -0.360 6.360 11 C -0.152 4.152 12 N -0.123 5.123 13 N -0.159 5.159 14 C 0.012 3.988 15 N -0.192 5.192 16 C -0.053 4.053 17 C -0.153 4.153 18 C -0.152 4.152 19 C 0.041 3.959 20 H 0.053 0.947 21 C -0.553 4.553 22 H 0.073 0.927 23 C -0.136 4.136 24 N -0.527 5.527 25 Si 0.718 3.282 26 H -0.207 1.207 27 H -0.213 1.213 28 H -0.199 1.199 29 C -0.043 4.043 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.224 0.776 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.054 0.946 50 H 0.070 0.930 51 H 0.077 0.923 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -16.239 -13.616 -5.186 21.818 hybrid contribution -0.461 1.226 0.007 1.309 sum -16.700 -12.391 -5.179 21.430 Atomic orbital electron populations 1.23775 0.95014 1.02056 1.00801 1.21977 0.95402 0.95896 1.00188 1.20848 1.00368 0.92841 1.03215 1.20839 1.01733 0.94923 0.80018 1.46400 1.16853 1.38618 1.13499 1.24240 0.97556 0.98733 0.88343 1.20624 0.88275 0.95446 1.00196 1.23751 0.98209 0.97452 0.99380 1.23286 0.97069 0.89203 0.88490 1.86570 1.38891 1.63799 1.46770 1.23126 0.97167 0.93555 1.01307 1.73925 1.01650 1.17680 1.19033 1.74712 1.13471 1.11988 1.15693 1.22726 0.89850 0.98234 0.87953 1.58973 1.03500 1.07234 1.49540 1.22103 0.88353 0.94883 0.99961 1.21700 0.95559 0.97864 1.00166 1.21706 1.01984 0.94170 0.97339 1.18678 0.89427 0.91217 0.96589 0.94666 1.21086 1.23026 1.05780 1.05402 0.92722 1.24894 0.95736 0.97882 0.95095 1.69874 1.26453 1.34573 1.21777 0.86622 0.78600 0.82216 0.80743 1.20671 1.21259 1.19942 1.22423 1.00616 0.87934 0.93320 0.88683 0.87721 0.90924 0.90543 0.91953 0.88938 0.87388 0.87721 0.87593 0.90856 0.89912 0.77560 0.90480 0.88009 0.93776 0.92521 0.91961 0.92725 0.88755 0.94619 0.93004 0.92348 0.94140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 13.89 29.01 0.40 -1.25 16 2 C -0.13 -1.51 5.63 -101.07 -0.57 -2.08 16 3 C -0.12 -1.54 10.03 36.01 0.36 -1.18 16 4 C 0.15 1.66 6.09 -5.19 -0.03 1.62 16 5 N -0.46 -6.76 2.79 -115.37 -0.32 -7.09 16 6 C 0.18 2.58 7.11 -154.02 -1.09 1.49 16 7 C -0.02 -0.24 4.01 -90.96 -0.36 -0.61 16 8 C -0.15 -1.38 7.47 -25.83 -0.19 -1.58 16 9 C 0.08 0.61 5.21 -25.83 -0.13 0.48 16 10 O -0.56 -4.95 13.67 -35.23 -0.48 -5.43 16 11 C -0.11 -1.06 7.46 -25.92 -0.19 -1.25 16 12 N -0.28 -5.14 11.83 32.99 0.39 -4.75 16 13 N -0.32 -6.36 12.12 30.31 0.37 -5.99 16 14 C 0.37 6.66 6.46 -318.88 -2.06 4.60 16 15 N -0.47 -8.61 4.67 -174.55 -0.82 -9.42 16 16 C 0.07 1.31 5.40 -3.83 -0.02 1.29 16 17 C -0.11 -2.11 6.09 -26.65 -0.16 -2.27 16 18 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 19 C 0.06 1.43 2.26 -91.69 -0.21 1.22 16 20 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 21 C -0.51 -13.75 8.56 -34.44 -0.29 -14.05 16 22 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 23 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 24 N -0.89 -24.47 11.36 55.43 0.63 -23.84 16 25 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 29 C 0.08 1.78 4.54 -3.83 -0.02 1.76 16 30 H 0.09 0.69 6.97 -52.49 -0.37 0.32 16 31 H 0.10 0.91 8.04 -52.49 -0.42 0.49 16 32 H 0.07 1.15 7.74 -51.93 -0.40 0.75 16 33 H 0.08 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.06 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.09 0.76 7.25 -51.93 -0.38 0.38 16 36 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.10 0.77 6.33 -51.93 -0.33 0.44 16 38 H 0.11 1.28 7.81 -51.93 -0.41 0.88 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.38 1.62 9.12 45.56 0.42 2.03 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.09 2.38 6.16 -51.93 -0.32 2.06 16 49 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 50 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 51 H 0.06 1.29 7.70 -51.93 -0.40 0.89 16 52 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 414.75 15.07 6.25 6.25 Total: -1.00 -31.60 414.75 -11.86 -43.46 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -8.05 Total: 3.65 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -4.81 Total: -12.84 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.25 Total: -51.09 kcal Atomic # 8 Polarization: -4.95 SS G_CDS: -0.48 Total: -5.43 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.60 -11.86 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343692862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.527 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds