Wall clock time and date at job start Wed Apr 1 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50703 * 119.99919 * 2 1 4 4 C 1.50698 * 120.00145 * 180.02562 * 2 1 3 5 5 N 1.46504 * 109.46875 * 265.00054 * 4 2 1 6 6 C 1.36742 * 127.13680 * 91.82770 * 5 4 2 7 7 C 1.50698 * 126.34581 * 359.92993 * 6 5 4 8 8 C 1.53778 * 113.61603 * 219.14048 * 7 6 5 9 9 C 1.53959 * 87.02196 * 220.05323 * 8 7 6 10 10 O 1.42898 * 113.66488 * 139.93205 * 9 8 7 11 11 C 1.53778 * 87.10883 * 25.36196 * 9 8 7 12 12 N 1.30290 * 107.30516 * 179.97438 * 6 5 4 13 13 N 1.28530 * 110.05370 * 0.02562 * 12 6 5 14 14 C 1.31218 * 109.85846 * 359.73960 * 13 12 6 15 15 N 1.38584 * 126.47455 * 180.26685 * 14 13 12 16 16 C 1.46846 * 111.00240 * 68.59962 * 15 14 13 17 17 C 1.53036 * 109.52500 * 174.16578 * 16 15 14 18 18 C 1.53126 * 109.27976 * 59.17688 * 17 16 15 19 19 C 1.53115 * 109.15953 * 302.35068 * 18 17 16 20 20 H 1.09006 * 109.50190 * 297.70851 * 19 18 17 21 21 C 1.50696 * 109.53389 * 177.61468 * 19 18 17 22 22 H 1.08004 * 119.99950 * 240.17427 * 21 19 18 23 23 C 1.37885 * 120.00168 * 60.17720 * 21 19 18 24 24 N 1.31504 * 119.99783 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99982 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46833 * 89.99871 * 25 23 21 27 27 H 1.48497 * 109.46929 * 209.99770 * 25 23 21 28 28 H 1.48505 * 109.47169 * 329.99819 * 25 23 21 29 29 C 1.46851 * 110.99415 * 304.39173 * 15 14 13 30 30 H 1.07999 * 120.00068 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00348 * 359.72685 * 1 2 3 32 32 H 1.08995 * 109.46675 * 89.99631 * 3 2 1 33 33 H 1.08993 * 109.47128 * 209.99918 * 3 2 1 34 34 H 1.08998 * 109.46983 * 330.00515 * 3 2 1 35 35 H 1.09003 * 109.47080 * 24.99697 * 4 2 1 36 36 H 1.08996 * 109.47348 * 144.99648 * 4 2 1 37 37 H 1.09002 * 112.85032 * 350.34595 * 7 6 5 38 38 H 1.08996 * 113.61673 * 334.57319 * 8 7 6 39 39 H 1.09004 * 113.61147 * 105.47696 * 8 7 6 40 40 H 1.09003 * 113.60824 * 270.80352 * 9 8 7 41 41 H 0.96709 * 113.99783 * 82.44467 * 10 9 8 42 42 H 1.09002 * 113.61535 * 220.09163 * 11 9 8 43 43 H 1.08998 * 113.69037 * 89.20022 * 11 9 8 44 44 H 1.09006 * 109.46069 * 294.17720 * 16 15 14 45 45 H 1.08998 * 109.46273 * 54.14359 * 16 15 14 46 46 H 1.08998 * 109.50201 * 299.24112 * 17 16 15 47 47 H 1.08993 * 109.50523 * 179.12007 * 17 16 15 48 48 H 1.08995 * 109.51891 * 182.44483 * 18 17 16 49 49 H 1.09001 * 109.57038 * 62.28370 * 18 17 16 50 50 H 0.97004 * 120.00199 * 179.97438 * 24 23 21 51 51 H 1.08995 * 109.46494 * 305.85194 * 29 15 14 52 52 H 1.09001 * 109.46608 * 65.83843 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 -0.0006 5 7 2.4120 -1.6684 1.3753 6 6 1.6838 -2.4447 2.2337 7 6 0.3560 -3.0949 1.9420 8 6 -0.6212 -3.0595 3.1289 9 6 -1.0204 -4.4945 2.7394 10 8 -1.2180 -5.3591 3.8599 11 6 0.3715 -4.6247 2.0988 12 7 2.3504 -2.5173 3.3508 13 7 3.4415 -1.8444 3.2575 14 6 3.5328 -1.3065 2.0641 15 7 4.5704 -0.5177 1.5932 16 6 5.7986 -1.3059 1.4302 17 6 6.8778 -0.4415 0.7744 18 6 7.1478 0.7831 1.6531 19 6 5.8428 1.5601 1.8471 20 1 5.4848 1.9170 0.8813 21 6 6.0865 2.7350 2.7587 22 1 5.5472 2.8162 3.6909 23 6 6.9981 3.7063 2.4028 24 7 7.6551 3.6072 1.2679 25 14 7.3008 5.1624 3.5332 26 1 8.3955 4.8337 4.4813 27 1 7.6859 6.3460 2.7234 28 1 6.0615 5.4647 4.2936 29 6 4.7935 0.6376 2.4718 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5401 0.9353 0.0045 32 1 2.2451 1.6197 1.0276 33 1 3.0159 1.1748 -0.5138 34 1 1.4744 2.0648 -0.5137 35 1 1.4386 -2.0853 -0.4352 36 1 2.9742 -1.1986 -0.5900 37 1 -0.0840 -2.7567 1.0039 38 1 -0.1282 -2.9915 4.0986 39 1 -1.4261 -2.3340 3.0103 40 1 -1.8381 -4.5402 2.0200 41 1 -2.0918 -5.2817 4.2671 42 1 0.3671 -5.1609 1.1499 43 1 1.1375 -4.9854 2.7853 44 1 6.1466 -1.6423 2.4069 45 1 5.5938 -2.1714 0.8000 46 1 6.5361 -0.1161 -0.2081 47 1 7.7941 -1.0221 0.6678 48 1 7.8846 1.4237 1.1685 49 1 7.5271 0.4603 2.6227 50 1 8.2962 4.2908 1.0173 51 1 3.8588 1.1838 2.5980 52 1 5.1465 0.2922 3.4435 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343692862.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:13 Heat of formation + Delta-G solvation = 51.528771 kcal Electronic energy + Delta-G solvation = -31968.124206 eV Core-core repulsion = 27969.230543 eV Total energy + Delta-G solvation = -3998.893663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.07999 -40.27269 -39.73873 -37.83101 -36.12469 -35.62550 -34.41248 -33.58512 -31.84899 -30.44453 -28.47132 -27.87938 -27.01922 -26.71635 -26.17241 -25.38533 -23.33502 -22.46372 -22.18380 -20.66237 -20.05692 -19.74320 -18.82035 -18.56398 -17.80598 -17.29235 -17.17164 -16.55934 -16.29919 -16.05969 -15.73860 -15.55802 -15.30072 -15.08140 -14.68120 -14.52023 -14.48559 -14.23949 -14.02032 -13.56038 -13.45358 -13.30575 -13.02200 -12.90004 -12.88053 -12.78898 -12.72796 -12.62413 -12.57101 -12.40818 -12.08288 -11.95175 -11.83806 -11.63795 -11.43135 -11.40130 -11.09779 -11.04387 -10.78244 -10.71587 -10.42049 -10.21037 -10.01626 -9.72155 -8.11312 -6.24068 0.60213 0.89161 1.39203 1.40771 1.49976 1.59739 1.72942 2.41001 2.78259 3.13992 3.16419 3.44937 3.51521 3.66074 3.69724 3.75129 3.84808 3.92352 3.97324 4.08692 4.17789 4.20552 4.35428 4.40990 4.42820 4.49555 4.56897 4.62067 4.70088 4.74840 4.77786 4.79756 4.84115 4.85983 4.91676 4.97057 5.00397 5.02716 5.08042 5.11930 5.17274 5.27850 5.42977 5.45115 5.56573 5.59992 5.64228 5.73462 5.81633 5.98487 6.10410 6.32639 6.36924 6.84239 7.00955 7.43186 7.69683 8.93427 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.002855 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.760335 B = 9803.888420 C =10064.067492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.165 4.165 3 C -0.110 4.110 4 C 0.142 3.858 5 N -0.454 5.454 6 C 0.200 3.800 7 C -0.025 4.025 8 C -0.153 4.153 9 C 0.093 3.907 10 O -0.582 6.582 11 C -0.118 4.118 12 N -0.326 5.326 13 N -0.357 5.357 14 C 0.350 3.650 15 N -0.455 5.455 16 C 0.078 3.922 17 C -0.102 4.102 18 C -0.108 4.108 19 C 0.066 3.934 20 H 0.013 0.987 21 C -0.539 4.539 22 H 0.042 0.958 23 C 0.024 3.976 24 N -0.908 5.908 25 Si 0.948 3.052 26 H -0.277 1.277 27 H -0.278 1.278 28 H -0.274 1.274 29 C 0.106 3.894 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.101 0.899 37 H 0.147 0.853 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.126 0.874 41 H 0.396 0.604 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.028 0.972 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.020 0.980 50 H 0.263 0.737 51 H 0.044 0.956 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.355 -14.808 -7.934 26.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.166 4.166 3 C -0.167 4.167 4 C 0.022 3.978 5 N -0.145 5.145 6 C -0.068 4.068 7 C -0.045 4.045 8 C -0.192 4.192 9 C 0.034 3.966 10 O -0.390 6.390 11 C -0.157 4.157 12 N -0.165 5.165 13 N -0.200 5.200 14 C -0.008 4.008 15 N -0.180 5.180 16 C -0.049 4.049 17 C -0.140 4.140 18 C -0.146 4.146 19 C 0.047 3.953 20 H 0.031 0.969 21 C -0.577 4.577 22 H 0.061 0.939 23 C -0.176 4.176 24 N -0.547 5.547 25 Si 0.774 3.226 26 H -0.203 1.203 27 H -0.204 1.204 28 H -0.198 1.198 29 C -0.021 4.021 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.155 0.845 36 H 0.120 0.880 37 H 0.164 0.836 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.144 0.856 41 H 0.247 0.753 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.103 0.897 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.087 0.913 49 H 0.039 0.961 50 H 0.072 0.928 51 H 0.063 0.937 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -19.354 -15.072 -7.251 25.580 hybrid contribution 0.373 1.656 0.656 1.820 sum -18.981 -13.416 -6.595 24.161 Atomic orbital electron populations 1.24121 0.94052 1.03997 0.96200 1.21792 0.96160 0.94626 1.03976 1.20720 1.00288 0.95076 1.00634 1.21184 1.02432 0.96282 0.77912 1.46615 1.15408 1.37824 1.14675 1.25193 0.98094 0.96603 0.86908 1.21082 0.85767 0.95489 1.02181 1.23722 0.98395 0.99728 0.97305 1.23368 0.97258 0.87358 0.88636 1.86525 1.40837 1.64043 1.47594 1.23118 0.97436 0.93104 1.02031 1.73848 1.02027 1.19170 1.21466 1.74588 1.15051 1.13175 1.17227 1.22590 0.90800 0.98983 0.88401 1.58885 1.04204 1.06766 1.48172 1.22104 0.87834 0.95392 0.99585 1.21575 0.97045 0.96240 0.99158 1.21523 1.00345 0.95527 0.97190 1.18520 0.90686 0.91223 0.94911 0.96934 1.21381 1.23392 1.07407 1.05557 0.93933 1.25560 0.95435 1.00144 0.96424 1.69979 1.26617 1.35265 1.22805 0.85711 0.78368 0.79414 0.79091 1.20300 1.20356 1.19837 1.21936 0.98939 0.88766 0.92432 0.85269 0.87162 0.94753 0.92468 0.90633 0.84541 0.88045 0.83578 0.91394 0.88512 0.85641 0.75335 0.87777 0.91763 0.95343 0.89729 0.91496 0.90120 0.91261 0.96097 0.92814 0.93731 0.96594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 13.89 67.78 0.94 -1.10 16 2 C -0.16 -3.34 5.63 -16.49 -0.09 -3.44 16 3 C -0.11 -2.97 10.03 71.24 0.71 -2.26 16 4 C 0.14 2.81 6.09 85.63 0.52 3.33 16 5 N -0.45 -12.77 2.79 -518.91 -1.45 -14.22 16 6 C 0.20 5.54 7.11 137.64 0.98 6.52 16 7 C -0.02 -0.40 4.01 -11.01 -0.04 -0.44 16 8 C -0.15 -2.40 7.47 31.18 0.23 -2.17 16 9 C 0.09 1.08 5.21 31.18 0.16 1.25 16 10 O -0.58 -9.03 13.67 -148.98 -2.04 -11.06 16 11 C -0.12 -1.86 7.46 31.12 0.23 -1.62 16 12 N -0.33 -12.16 11.83 -49.54 -0.59 -12.75 16 13 N -0.36 -15.03 12.12 -58.01 -0.70 -15.74 16 14 C 0.35 12.96 6.46 260.11 1.68 14.64 16 15 N -0.45 -17.42 4.67 -706.15 -3.30 -20.72 16 16 C 0.08 2.79 5.40 86.33 0.47 3.26 16 17 C -0.10 -3.78 6.09 30.65 0.19 -3.59 16 18 C -0.11 -5.09 5.03 30.67 0.15 -4.94 16 19 C 0.07 3.32 2.26 -11.49 -0.03 3.29 16 20 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 21 C -0.54 -30.30 8.56 25.60 0.22 -30.08 16 22 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 23 C 0.02 1.33 5.31 84.66 0.45 1.78 16 24 N -0.91 -51.39 11.36 21.45 0.24 -51.14 16 25 Si 0.95 44.08 29.54 68.60 2.03 46.10 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 28 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 29 C 0.11 4.88 4.54 86.33 0.39 5.27 16 30 H 0.13 0.95 6.97 -2.91 -0.02 0.93 16 31 H 0.11 1.47 8.04 -2.91 -0.02 1.44 16 32 H 0.03 1.15 7.74 -2.39 -0.02 1.14 16 33 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 34 H 0.07 1.73 8.06 -2.39 -0.02 1.71 16 35 H 0.14 1.48 7.25 -2.39 -0.02 1.46 16 36 H 0.10 2.16 8.10 -2.39 -0.02 2.14 16 37 H 0.15 1.15 6.33 -2.39 -0.02 1.14 16 38 H 0.07 1.63 7.81 -2.39 -0.02 1.61 16 39 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.40 2.38 9.12 -74.05 -0.68 1.70 16 42 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.52 8.09 -2.39 -0.02 1.51 16 44 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.08 2.60 8.10 -2.39 -0.02 2.58 16 46 H 0.07 2.42 8.14 -2.39 -0.02 2.41 16 47 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 48 H 0.07 3.63 6.16 -2.39 -0.01 3.62 16 49 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 51 H 0.04 2.13 7.70 -2.39 -0.02 2.11 16 52 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -75.52 414.75 1.60 -73.92 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.23 Total: 15.92 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 7.17 Total: -10.31 kcal Atomic # 7 Polarization: -108.78 SS G_CDS: -5.79 Total: -114.57 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -2.04 Total: -11.06 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.52 1.60 -73.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343692862.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.448 kcal (2) G-P(sol) polarization free energy of solvation -75.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds